Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00166 and MPMX20_00167 are separated by 103 nucleotides MPMX20_00167 and MPMX20_00168 overlap by 1 nucleotides MPMX20_00168 and MPMX20_00169 overlap by 8 nucleotides
MPMX20_00166: MPMX20_00166 - Xylulose kinase, at 172,472 to 173,926
_00166
MPMX20_00167: MPMX20_00167 - hypothetical protein, at 174,030 to 174,569
_00167
MPMX20_00168: MPMX20_00168 - HTH-type transcriptional regulator CdhR, at 174,569 to 175,489
_00168
MPMX20_00169: MPMX20_00169 - O-acetyltransferase WecH, at 175,482 to 176,477
_00169
Position (kb)
174
175
176 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 173.587 kb on - strand, within MPMX20_00166 at 173.587 kb on - strand, within MPMX20_00166 at 173.598 kb on + strand, within MPMX20_00166 at 173.598 kb on + strand, within MPMX20_00166 at 173.609 kb on + strand, within MPMX20_00166 at 173.609 kb on + strand, within MPMX20_00166 at 173.617 kb on - strand, within MPMX20_00166 at 173.622 kb on + strand, within MPMX20_00166 at 173.640 kb on - strand, within MPMX20_00166 at 173.668 kb on - strand, within MPMX20_00166 at 173.732 kb on + strand, within MPMX20_00166 at 173.746 kb on + strand, within MPMX20_00166 at 173.746 kb on + strand, within MPMX20_00166 at 173.772 kb on - strand, within MPMX20_00166 at 173.820 kb on + strand at 173.834 kb on + strand at 173.874 kb on + strand at 173.945 kb on + strand at 173.946 kb on + strand at 173.979 kb on - strand at 174.000 kb on + strand at 174.000 kb on + strand at 174.002 kb on + strand at 174.112 kb on + strand, within MPMX20_00167 at 174.137 kb on + strand, within MPMX20_00167 at 174.137 kb on + strand, within MPMX20_00167 at 174.145 kb on - strand, within MPMX20_00167 at 174.197 kb on - strand, within MPMX20_00167 at 174.197 kb on - strand, within MPMX20_00167 at 174.197 kb on - strand, within MPMX20_00167 at 174.339 kb on - strand, within MPMX20_00167 at 174.339 kb on - strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.392 kb on + strand, within MPMX20_00167 at 174.397 kb on + strand, within MPMX20_00167 at 174.405 kb on - strand, within MPMX20_00167 at 174.405 kb on - strand, within MPMX20_00167 at 174.407 kb on + strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.422 kb on - strand, within MPMX20_00167 at 174.466 kb on + strand, within MPMX20_00167 at 174.564 kb on + strand at 174.624 kb on - strand at 174.635 kb on - strand at 174.670 kb on + strand, within MPMX20_00168 at 174.670 kb on + strand, within MPMX20_00168 at 174.715 kb on + strand, within MPMX20_00168 at 174.726 kb on + strand, within MPMX20_00168 at 174.734 kb on - strand, within MPMX20_00168 at 174.894 kb on + strand, within MPMX20_00168 at 174.902 kb on - strand, within MPMX20_00168 at 174.902 kb on - strand, within MPMX20_00168 at 174.902 kb on - strand, within MPMX20_00168 at 174.933 kb on + strand, within MPMX20_00168 at 174.943 kb on + strand, within MPMX20_00168 at 174.945 kb on + strand, within MPMX20_00168 at 174.951 kb on - strand, within MPMX20_00168 at 175.037 kb on + strand, within MPMX20_00168 at 175.045 kb on - strand, within MPMX20_00168 at 175.079 kb on - strand, within MPMX20_00168 at 175.079 kb on - strand, within MPMX20_00168 at 175.089 kb on - strand, within MPMX20_00168 at 175.155 kb on + strand, within MPMX20_00168 at 175.242 kb on + strand, within MPMX20_00168 at 175.259 kb on + strand, within MPMX20_00168 at 175.267 kb on - strand, within MPMX20_00168 at 175.267 kb on - strand, within MPMX20_00168 at 175.356 kb on + strand, within MPMX20_00168 at 175.356 kb on + strand, within MPMX20_00168 at 175.410 kb on + strand at 175.415 kb on + strand at 175.418 kb on - strand at 175.418 kb on - strand at 175.418 kb on - strand at 175.464 kb on - strand at 175.479 kb on + strand at 175.479 kb on + strand at 175.507 kb on + strand at 175.520 kb on + strand at 175.520 kb on + strand at 175.666 kb on - strand, within MPMX20_00169 at 175.690 kb on - strand, within MPMX20_00169 at 175.728 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.740 kb on + strand, within MPMX20_00169 at 175.748 kb on - strand, within MPMX20_00169 at 175.748 kb on - strand, within MPMX20_00169 at 175.748 kb on - strand, within MPMX20_00169 at 175.850 kb on + strand, within MPMX20_00169 at 175.850 kb on + strand, within MPMX20_00169 at 175.858 kb on - strand, within MPMX20_00169 at 175.858 kb on - strand, within MPMX20_00169 at 175.920 kb on + strand, within MPMX20_00169 at 175.921 kb on - strand, within MPMX20_00169 at 175.930 kb on + strand, within MPMX20_00169 at 176.073 kb on - strand, within MPMX20_00169 at 176.073 kb on - strand, within MPMX20_00169 at 176.154 kb on + strand, within MPMX20_00169 at 176.162 kb on - strand, within MPMX20_00169 at 176.173 kb on + strand, within MPMX20_00169 at 176.183 kb on + strand, within MPMX20_00169 at 176.187 kb on + strand, within MPMX20_00169 at 176.192 kb on + strand, within MPMX20_00169 at 176.200 kb on - strand, within MPMX20_00169 at 176.200 kb on - strand, within MPMX20_00169 at 176.202 kb on + strand, within MPMX20_00169 at 176.208 kb on + strand, within MPMX20_00169 at 176.208 kb on + strand, within MPMX20_00169 at 176.210 kb on - strand, within MPMX20_00169 at 176.210 kb on - strand, within MPMX20_00169 at 176.220 kb on + strand, within MPMX20_00169 at 176.220 kb on + strand, within MPMX20_00169 at 176.228 kb on - strand, within MPMX20_00169 at 176.228 kb on - strand, within MPMX20_00169 at 176.315 kb on - strand, within MPMX20_00169 at 176.320 kb on - strand, within MPMX20_00169 at 176.322 kb on + strand, within MPMX20_00169 at 176.335 kb on + strand, within MPMX20_00169 at 176.337 kb on + strand, within MPMX20_00169 at 176.337 kb on + strand, within MPMX20_00169 at 176.363 kb on + strand, within MPMX20_00169 at 176.369 kb on + strand, within MPMX20_00169 at 176.369 kb on + strand, within MPMX20_00169 at 176.369 kb on + strand, within MPMX20_00169 at 176.371 kb on - strand, within MPMX20_00169 at 176.377 kb on - strand, within MPMX20_00169 at 176.377 kb on - strand, within MPMX20_00169 at 176.377 kb on - strand, within MPMX20_00169 at 176.379 kb on + strand at 176.423 kb on + strand at 176.431 kb on - strand at 176.442 kb on - strand at 176.445 kb on - strand at 176.475 kb on + strand at 176.483 kb on - strand at 176.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 173,587 - MPMX20_00166 0.77 +0.4 173,587 - MPMX20_00166 0.77 -0.0 173,598 + MPMX20_00166 0.77 +0.9 173,598 + MPMX20_00166 0.77 -1.1 173,609 + MPMX20_00166 0.78 -2.0 173,609 + MPMX20_00166 0.78 -1.2 173,617 - MPMX20_00166 0.79 +1.7 173,622 + MPMX20_00166 0.79 -1.0 173,640 - MPMX20_00166 0.80 -1.5 173,668 - MPMX20_00166 0.82 -0.2 173,732 + MPMX20_00166 0.87 +0.7 173,746 + MPMX20_00166 0.88 -1.4 173,746 + MPMX20_00166 0.88 +0.0 173,772 - MPMX20_00166 0.89 +0.6 173,820 + +0.6 173,834 + -2.1 173,874 + +0.1 173,945 + +2.6 173,946 + +0.5 173,979 - -0.1 174,000 + +2.2 174,000 + -1.7 174,002 + +0.8 174,112 + MPMX20_00167 0.15 +1.2 174,137 + MPMX20_00167 0.20 +2.9 174,137 + MPMX20_00167 0.20 +0.2 174,145 - MPMX20_00167 0.21 -0.6 174,197 - MPMX20_00167 0.31 +2.5 174,197 - MPMX20_00167 0.31 +1.9 174,197 - MPMX20_00167 0.31 +1.7 174,339 - MPMX20_00167 0.57 +1.1 174,339 - MPMX20_00167 0.57 +1.2 174,366 + MPMX20_00167 0.62 +0.6 174,366 + MPMX20_00167 0.62 +0.7 174,366 + MPMX20_00167 0.62 +2.9 174,366 + MPMX20_00167 0.62 +2.7 174,366 + MPMX20_00167 0.62 +2.5 174,392 + MPMX20_00167 0.67 +1.7 174,397 + MPMX20_00167 0.68 +5.9 174,405 - MPMX20_00167 0.69 +1.8 174,405 - MPMX20_00167 0.69 +3.5 174,407 + MPMX20_00167 0.70 -2.0 174,415 - MPMX20_00167 0.71 +2.0 174,415 - MPMX20_00167 0.71 +0.2 174,415 - MPMX20_00167 0.71 +0.8 174,415 - MPMX20_00167 0.71 +0.4 174,415 - MPMX20_00167 0.71 +0.6 174,422 - MPMX20_00167 0.73 +1.2 174,466 + MPMX20_00167 0.81 +2.9 174,564 + -1.3 174,624 - +2.1 174,635 - -0.6 174,670 + MPMX20_00168 0.11 +0.6 174,670 + MPMX20_00168 0.11 +1.6 174,715 + MPMX20_00168 0.16 +1.5 174,726 + MPMX20_00168 0.17 +0.2 174,734 - MPMX20_00168 0.18 -0.0 174,894 + MPMX20_00168 0.35 +0.2 174,902 - MPMX20_00168 0.36 +1.4 174,902 - MPMX20_00168 0.36 +1.6 174,902 - MPMX20_00168 0.36 +1.8 174,933 + MPMX20_00168 0.40 +0.9 174,943 + MPMX20_00168 0.41 +1.7 174,945 + MPMX20_00168 0.41 +2.2 174,951 - MPMX20_00168 0.41 +0.2 175,037 + MPMX20_00168 0.51 -0.4 175,045 - MPMX20_00168 0.52 +1.8 175,079 - MPMX20_00168 0.55 +1.5 175,079 - MPMX20_00168 0.55 -0.7 175,089 - MPMX20_00168 0.56 -0.3 175,155 + MPMX20_00168 0.64 +0.2 175,242 + MPMX20_00168 0.73 +0.7 175,259 + MPMX20_00168 0.75 +0.5 175,267 - MPMX20_00168 0.76 +1.7 175,267 - MPMX20_00168 0.76 +2.4 175,356 + MPMX20_00168 0.85 +3.2 175,356 + MPMX20_00168 0.85 +2.9 175,410 + +1.3 175,415 + +2.1 175,418 - +3.2 175,418 - +1.7 175,418 - +1.5 175,464 - +0.5 175,479 + -1.1 175,479 + -0.8 175,507 + +1.3 175,520 + -0.9 175,520 + +0.2 175,666 - MPMX20_00169 0.18 -0.6 175,690 - MPMX20_00169 0.21 -2.1 175,728 + MPMX20_00169 0.25 -1.6 175,740 + MPMX20_00169 0.26 -0.1 175,740 + MPMX20_00169 0.26 -1.3 175,740 + MPMX20_00169 0.26 -2.1 175,740 + MPMX20_00169 0.26 +0.2 175,740 + MPMX20_00169 0.26 -0.6 175,740 + MPMX20_00169 0.26 +2.8 175,740 + MPMX20_00169 0.26 +0.2 175,740 + MPMX20_00169 0.26 +0.6 175,748 - MPMX20_00169 0.27 -0.5 175,748 - MPMX20_00169 0.27 +1.2 175,748 - MPMX20_00169 0.27 -0.9 175,850 + MPMX20_00169 0.37 +1.2 175,850 + MPMX20_00169 0.37 +3.8 175,858 - MPMX20_00169 0.38 -0.8 175,858 - MPMX20_00169 0.38 +0.6 175,920 + MPMX20_00169 0.44 +0.8 175,921 - MPMX20_00169 0.44 +0.3 175,930 + MPMX20_00169 0.45 -0.1 176,073 - MPMX20_00169 0.59 +0.1 176,073 - MPMX20_00169 0.59 -1.9 176,154 + MPMX20_00169 0.67 +0.4 176,162 - MPMX20_00169 0.68 +0.2 176,173 + MPMX20_00169 0.69 -0.5 176,183 + MPMX20_00169 0.70 -1.1 176,187 + MPMX20_00169 0.71 +1.3 176,192 + MPMX20_00169 0.71 +1.3 176,200 - MPMX20_00169 0.72 +0.2 176,200 - MPMX20_00169 0.72 -0.0 176,202 + MPMX20_00169 0.72 -1.7 176,208 + MPMX20_00169 0.73 -1.4 176,208 + MPMX20_00169 0.73 -1.7 176,210 - MPMX20_00169 0.73 +2.8 176,210 - MPMX20_00169 0.73 +0.3 176,220 + MPMX20_00169 0.74 +0.2 176,220 + MPMX20_00169 0.74 -0.9 176,228 - MPMX20_00169 0.75 +2.2 176,228 - MPMX20_00169 0.75 +0.8 176,315 - MPMX20_00169 0.84 -0.4 176,320 - MPMX20_00169 0.84 +0.9 176,322 + MPMX20_00169 0.84 -0.1 176,335 + MPMX20_00169 0.86 -0.4 176,337 + MPMX20_00169 0.86 -1.7 176,337 + MPMX20_00169 0.86 +0.0 176,363 + MPMX20_00169 0.88 +1.5 176,369 + MPMX20_00169 0.89 +0.9 176,369 + MPMX20_00169 0.89 -0.7 176,369 + MPMX20_00169 0.89 +0.4 176,371 - MPMX20_00169 0.89 -0.5 176,377 - MPMX20_00169 0.90 -0.3 176,377 - MPMX20_00169 0.90 +2.2 176,377 - MPMX20_00169 0.90 +0.8 176,379 + -1.8 176,423 + -0.7 176,431 - +0.6 176,442 - +1.2 176,445 - -0.2 176,475 + +0.7 176,483 - +2.6 176,483 - -0.8
Or see this region's nucleotide sequence