Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08490

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08480 and AZOBR_RS08485 are separated by 94 nucleotidesAZOBR_RS08485 and AZOBR_RS08490 are separated by 160 nucleotidesAZOBR_RS08490 and AZOBR_RS08500 are separated by 987 nucleotides AZOBR_RS08480: AZOBR_RS08480 - ABC transporter permease, at 1,779,951 to 1,781,165 _RS08480 AZOBR_RS08485: AZOBR_RS08485 - hypothetical protein, at 1,781,260 to 1,781,493 _RS08485 AZOBR_RS08490: AZOBR_RS08490 - hypothetical protein, at 1,781,654 to 1,781,872 _RS08490 AZOBR_RS08500: AZOBR_RS08500 - ABC transporter permease, at 1,782,860 to 1,783,843 _RS08500 Position (kb) 1781 1782Strain fitness (log2 ratio) -2 -1 0 1 2at 1780.794 kb on + strand, within AZOBR_RS08480at 1780.794 kb on + strand, within AZOBR_RS08480at 1780.795 kb on - strand, within AZOBR_RS08480at 1780.837 kb on - strand, within AZOBR_RS08480at 1780.837 kb on - strand, within AZOBR_RS08480at 1780.854 kb on - strand, within AZOBR_RS08480at 1780.884 kb on + strand, within AZOBR_RS08480at 1780.885 kb on - strand, within AZOBR_RS08480at 1780.885 kb on - strand, within AZOBR_RS08480at 1780.902 kb on + strand, within AZOBR_RS08480at 1780.902 kb on + strand, within AZOBR_RS08480at 1780.903 kb on - strand, within AZOBR_RS08480at 1781.038 kb on - strand, within AZOBR_RS08480at 1781.038 kb on - strand, within AZOBR_RS08480at 1781.038 kb on - strand, within AZOBR_RS08480at 1781.038 kb on - strand, within AZOBR_RS08480at 1781.038 kb on - strand, within AZOBR_RS08480at 1781.410 kb on + strand, within AZOBR_RS08485at 1782.042 kb on + strandat 1782.117 kb on + strandat 1782.117 kb on + strandat 1782.117 kb on + strandat 1782.253 kb on - strandat 1782.330 kb on + strandat 1782.330 kb on + strandat 1782.331 kb on - strandat 1782.627 kb on - strandat 1782.627 kb on - strandat 1782.627 kb on - strandat 1782.729 kb on - strandat 1782.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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1,780,794 + AZOBR_RS08480 0.69 -0.5
1,780,794 + AZOBR_RS08480 0.69 +0.1
1,780,795 - AZOBR_RS08480 0.69 -0.2
1,780,837 - AZOBR_RS08480 0.73 -2.3
1,780,837 - AZOBR_RS08480 0.73 +0.1
1,780,854 - AZOBR_RS08480 0.74 +0.2
1,780,884 + AZOBR_RS08480 0.77 -0.5
1,780,885 - AZOBR_RS08480 0.77 -0.0
1,780,885 - AZOBR_RS08480 0.77 +0.2
1,780,902 + AZOBR_RS08480 0.78 -0.3
1,780,902 + AZOBR_RS08480 0.78 +0.4
1,780,903 - AZOBR_RS08480 0.78 -1.4
1,781,038 - AZOBR_RS08480 0.89 +0.0
1,781,038 - AZOBR_RS08480 0.89 -0.6
1,781,038 - AZOBR_RS08480 0.89 -0.3
1,781,038 - AZOBR_RS08480 0.89 +1.3
1,781,038 - AZOBR_RS08480 0.89 -0.1
1,781,410 + AZOBR_RS08485 0.64 +2.0
1,782,042 + +0.5
1,782,117 + -1.1
1,782,117 + +1.7
1,782,117 + +0.4
1,782,253 - -0.0
1,782,330 + -0.5
1,782,330 + +0.5
1,782,331 - +0.7
1,782,627 - +0.1
1,782,627 - -0.4
1,782,627 - -0.3
1,782,729 - +1.0
1,782,768 - -0.5

Or see this region's nucleotide sequence