Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04571 and MPMX20_04572 overlap by 1 nucleotides MPMX20_04572 and MPMX20_04573 are separated by 41 nucleotides MPMX20_04573 and MPMX20_04574 are separated by 114 nucleotides
MPMX20_04571: MPMX20_04571 - hypothetical protein, at 4,783,951 to 4,784,610
_04571
MPMX20_04572: MPMX20_04572 - hypothetical protein, at 4,784,610 to 4,784,933
_04572
MPMX20_04573: MPMX20_04573 - hypothetical protein, at 4,784,975 to 4,785,187
_04573
MPMX20_04574: MPMX20_04574 - Sulfur carrier protein FdhD, at 4,785,302 to 4,786,138
_04574
Position (kb)
4784
4785
4786 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4783.985 kb on + strand at 4783.985 kb on + strand at 4783.999 kb on + strand at 4783.999 kb on + strand at 4784.007 kb on - strand at 4784.017 kb on - strand, within MPMX20_04571 at 4784.034 kb on + strand, within MPMX20_04571 at 4784.034 kb on + strand, within MPMX20_04571 at 4784.055 kb on + strand, within MPMX20_04571 at 4784.089 kb on - strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.099 kb on - strand, within MPMX20_04571 at 4784.101 kb on - strand, within MPMX20_04571 at 4784.165 kb on - strand, within MPMX20_04571 at 4784.232 kb on + strand, within MPMX20_04571 at 4784.277 kb on + strand, within MPMX20_04571 at 4784.290 kb on + strand, within MPMX20_04571 at 4784.298 kb on - strand, within MPMX20_04571 at 4784.322 kb on + strand, within MPMX20_04571 at 4784.330 kb on - strand, within MPMX20_04571 at 4784.330 kb on - strand, within MPMX20_04571 at 4784.386 kb on - strand, within MPMX20_04571 at 4784.497 kb on + strand, within MPMX20_04571 at 4784.497 kb on + strand, within MPMX20_04571 at 4784.497 kb on + strand, within MPMX20_04571 at 4784.505 kb on - strand, within MPMX20_04571 at 4784.505 kb on - strand, within MPMX20_04571 at 4784.506 kb on - strand, within MPMX20_04571 at 4784.519 kb on + strand, within MPMX20_04571 at 4784.519 kb on + strand, within MPMX20_04571 at 4784.569 kb on + strand at 4784.588 kb on + strand at 4784.588 kb on + strand at 4784.588 kb on + strand at 4784.591 kb on - strand at 4784.728 kb on - strand, within MPMX20_04572 at 4784.732 kb on + strand, within MPMX20_04572 at 4784.740 kb on - strand, within MPMX20_04572 at 4784.782 kb on - strand, within MPMX20_04572 at 4784.786 kb on + strand, within MPMX20_04572 at 4784.786 kb on + strand, within MPMX20_04572 at 4784.794 kb on - strand, within MPMX20_04572 at 4784.843 kb on + strand, within MPMX20_04572 at 4784.843 kb on + strand, within MPMX20_04572 at 4784.851 kb on - strand, within MPMX20_04572 at 4784.912 kb on - strand at 4784.965 kb on + strand at 4784.986 kb on + strand at 4784.994 kb on - strand at 4784.994 kb on - strand at 4784.998 kb on + strand, within MPMX20_04573 at 4785.006 kb on - strand, within MPMX20_04573 at 4785.020 kb on + strand, within MPMX20_04573 at 4785.033 kb on - strand, within MPMX20_04573 at 4785.054 kb on + strand, within MPMX20_04573 at 4785.054 kb on + strand, within MPMX20_04573 at 4785.054 kb on + strand, within MPMX20_04573 at 4785.054 kb on + strand, within MPMX20_04573 at 4785.062 kb on - strand, within MPMX20_04573 at 4785.062 kb on - strand, within MPMX20_04573 at 4785.062 kb on - strand, within MPMX20_04573 at 4785.062 kb on - strand, within MPMX20_04573 at 4785.096 kb on + strand, within MPMX20_04573 at 4785.387 kb on - strand, within MPMX20_04574 at 4785.389 kb on + strand, within MPMX20_04574 at 4785.391 kb on + strand, within MPMX20_04574 at 4785.391 kb on + strand, within MPMX20_04574 at 4785.452 kb on - strand, within MPMX20_04574 at 4785.479 kb on - strand, within MPMX20_04574 at 4785.507 kb on - strand, within MPMX20_04574 at 4785.507 kb on - strand, within MPMX20_04574 at 4785.557 kb on - strand, within MPMX20_04574 at 4785.557 kb on - strand, within MPMX20_04574 at 4785.665 kb on - strand, within MPMX20_04574 at 4785.666 kb on + strand, within MPMX20_04574 at 4785.684 kb on - strand, within MPMX20_04574 at 4785.711 kb on - strand, within MPMX20_04574 at 4785.730 kb on - strand, within MPMX20_04574 at 4785.760 kb on + strand, within MPMX20_04574 at 4785.768 kb on - strand, within MPMX20_04574 at 4785.856 kb on + strand, within MPMX20_04574 at 4785.864 kb on - strand, within MPMX20_04574 at 4785.864 kb on - strand, within MPMX20_04574 at 4785.952 kb on + strand, within MPMX20_04574 at 4786.004 kb on + strand, within MPMX20_04574 at 4786.007 kb on - strand, within MPMX20_04574 at 4786.063 kb on - strand at 4786.136 kb on - strand at 4786.157 kb on + strand at 4786.157 kb on + strand at 4786.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 4,783,985 + +4.1 4,783,985 + -0.9 4,783,999 + +0.4 4,783,999 + -2.6 4,784,007 - -2.5 4,784,017 - MPMX20_04571 0.10 -0.0 4,784,034 + MPMX20_04571 0.13 +1.4 4,784,034 + MPMX20_04571 0.13 +0.3 4,784,055 + MPMX20_04571 0.16 -1.2 4,784,089 - MPMX20_04571 0.21 -2.1 4,784,091 + MPMX20_04571 0.21 -2.1 4,784,091 + MPMX20_04571 0.21 -0.6 4,784,091 + MPMX20_04571 0.21 -1.3 4,784,091 + MPMX20_04571 0.21 -0.3 4,784,099 - MPMX20_04571 0.22 +0.0 4,784,101 - MPMX20_04571 0.23 +1.2 4,784,165 - MPMX20_04571 0.32 -0.4 4,784,232 + MPMX20_04571 0.43 +0.2 4,784,277 + MPMX20_04571 0.49 +1.2 4,784,290 + MPMX20_04571 0.51 -2.0 4,784,298 - MPMX20_04571 0.53 -0.2 4,784,322 + MPMX20_04571 0.56 +0.8 4,784,330 - MPMX20_04571 0.57 -2.9 4,784,330 - MPMX20_04571 0.57 -1.0 4,784,386 - MPMX20_04571 0.66 -2.0 4,784,497 + MPMX20_04571 0.83 +1.7 4,784,497 + MPMX20_04571 0.83 +1.2 4,784,497 + MPMX20_04571 0.83 -1.0 4,784,505 - MPMX20_04571 0.84 -1.4 4,784,505 - MPMX20_04571 0.84 -2.1 4,784,506 - MPMX20_04571 0.84 -0.7 4,784,519 + MPMX20_04571 0.86 +0.6 4,784,519 + MPMX20_04571 0.86 -0.6 4,784,569 + +0.7 4,784,588 + -0.9 4,784,588 + -2.0 4,784,588 + -0.6 4,784,591 - -2.7 4,784,728 - MPMX20_04572 0.36 -0.5 4,784,732 + MPMX20_04572 0.38 -1.7 4,784,740 - MPMX20_04572 0.40 +0.6 4,784,782 - MPMX20_04572 0.53 +0.6 4,784,786 + MPMX20_04572 0.54 +1.2 4,784,786 + MPMX20_04572 0.54 -1.7 4,784,794 - MPMX20_04572 0.57 +1.7 4,784,843 + MPMX20_04572 0.72 +0.6 4,784,843 + MPMX20_04572 0.72 -0.7 4,784,851 - MPMX20_04572 0.74 -0.2 4,784,912 - +0.3 4,784,965 + +1.0 4,784,986 + -0.1 4,784,994 - +0.5 4,784,994 - -0.3 4,784,998 + MPMX20_04573 0.11 -0.1 4,785,006 - MPMX20_04573 0.15 +1.2 4,785,020 + MPMX20_04573 0.21 -0.1 4,785,033 - MPMX20_04573 0.27 +2.2 4,785,054 + MPMX20_04573 0.37 +2.7 4,785,054 + MPMX20_04573 0.37 -2.9 4,785,054 + MPMX20_04573 0.37 -2.3 4,785,054 + MPMX20_04573 0.37 -1.8 4,785,062 - MPMX20_04573 0.41 -1.5 4,785,062 - MPMX20_04573 0.41 -0.8 4,785,062 - MPMX20_04573 0.41 -1.7 4,785,062 - MPMX20_04573 0.41 -1.3 4,785,096 + MPMX20_04573 0.57 +0.2 4,785,387 - MPMX20_04574 0.10 +1.7 4,785,389 + MPMX20_04574 0.10 -0.3 4,785,391 + MPMX20_04574 0.11 -1.8 4,785,391 + MPMX20_04574 0.11 +0.2 4,785,452 - MPMX20_04574 0.18 -2.1 4,785,479 - MPMX20_04574 0.21 -3.3 4,785,507 - MPMX20_04574 0.24 -2.5 4,785,507 - MPMX20_04574 0.24 +0.2 4,785,557 - MPMX20_04574 0.30 -0.9 4,785,557 - MPMX20_04574 0.30 +0.7 4,785,665 - MPMX20_04574 0.43 -1.3 4,785,666 + MPMX20_04574 0.43 -2.3 4,785,684 - MPMX20_04574 0.46 -1.2 4,785,711 - MPMX20_04574 0.49 +0.2 4,785,730 - MPMX20_04574 0.51 -2.3 4,785,760 + MPMX20_04574 0.55 -1.7 4,785,768 - MPMX20_04574 0.56 -0.1 4,785,856 + MPMX20_04574 0.66 -0.5 4,785,864 - MPMX20_04574 0.67 +0.3 4,785,864 - MPMX20_04574 0.67 -1.3 4,785,952 + MPMX20_04574 0.78 +0.2 4,786,004 + MPMX20_04574 0.84 -1.0 4,786,007 - MPMX20_04574 0.84 +1.7 4,786,063 - -0.1 4,786,136 - -2.6 4,786,157 + -2.9 4,786,157 + +1.2 4,786,157 + -2.1
Or see this region's nucleotide sequence