Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04531 and MPMX20_04532 are separated by 276 nucleotides MPMX20_04532 and MPMX20_04533 are separated by 48 nucleotides MPMX20_04533 and MPMX20_04534 are separated by 200 nucleotides
MPMX20_04531: MPMX20_04531 - Cystathionine gamma-synthase, at 4,744,288 to 4,745,448
_04531
MPMX20_04532: MPMX20_04532 - Met repressor, at 4,745,725 to 4,746,042
_04532
MPMX20_04533: MPMX20_04533 - 50S ribosomal protein L31, at 4,746,091 to 4,746,303
_04533
MPMX20_04534: MPMX20_04534 - Primosomal protein N', at 4,746,504 to 4,748,699
_04534
Position (kb)
4745
4746
4747 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4744.735 kb on + strand, within MPMX20_04531 at 4744.765 kb on - strand, within MPMX20_04531 at 4744.775 kb on + strand, within MPMX20_04531 at 4744.824 kb on - strand, within MPMX20_04531 at 4744.890 kb on + strand, within MPMX20_04531 at 4744.898 kb on - strand, within MPMX20_04531 at 4744.903 kb on + strand, within MPMX20_04531 at 4744.925 kb on + strand, within MPMX20_04531 at 4744.925 kb on + strand, within MPMX20_04531 at 4744.932 kb on + strand, within MPMX20_04531 at 4744.932 kb on + strand, within MPMX20_04531 at 4744.932 kb on - strand, within MPMX20_04531 at 4744.940 kb on - strand, within MPMX20_04531 at 4745.015 kb on + strand, within MPMX20_04531 at 4745.144 kb on + strand, within MPMX20_04531 at 4745.158 kb on - strand, within MPMX20_04531 at 4745.219 kb on + strand, within MPMX20_04531 at 4745.238 kb on - strand, within MPMX20_04531 at 4745.317 kb on - strand, within MPMX20_04531 at 4745.319 kb on - strand, within MPMX20_04531 at 4745.392 kb on - strand at 4745.394 kb on - strand at 4745.421 kb on + strand at 4745.436 kb on + strand at 4745.449 kb on + strand at 4745.457 kb on - strand at 4745.471 kb on - strand at 4745.633 kb on - strand at 4745.637 kb on + strand at 4745.667 kb on - strand at 4745.710 kb on + strand at 4745.710 kb on + strand at 4745.820 kb on - strand, within MPMX20_04532 at 4745.893 kb on + strand, within MPMX20_04532 at 4745.953 kb on - strand, within MPMX20_04532 at 4745.953 kb on - strand, within MPMX20_04532 at 4746.002 kb on - strand, within MPMX20_04532 at 4746.117 kb on - strand, within MPMX20_04533 at 4746.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 4,744,735 + MPMX20_04531 0.39 +0.0 4,744,765 - MPMX20_04531 0.41 -2.8 4,744,775 + MPMX20_04531 0.42 +2.7 4,744,824 - MPMX20_04531 0.46 -2.3 4,744,890 + MPMX20_04531 0.52 -1.3 4,744,898 - MPMX20_04531 0.53 -1.8 4,744,903 + MPMX20_04531 0.53 +0.7 4,744,925 + MPMX20_04531 0.55 -0.6 4,744,925 + MPMX20_04531 0.55 -0.4 4,744,932 + MPMX20_04531 0.55 +0.3 4,744,932 + MPMX20_04531 0.55 +0.2 4,744,932 - MPMX20_04531 0.55 -1.3 4,744,940 - MPMX20_04531 0.56 -0.8 4,745,015 + MPMX20_04531 0.63 -2.0 4,745,144 + MPMX20_04531 0.74 +1.2 4,745,158 - MPMX20_04531 0.75 -0.8 4,745,219 + MPMX20_04531 0.80 -0.5 4,745,238 - MPMX20_04531 0.82 -0.1 4,745,317 - MPMX20_04531 0.89 -0.9 4,745,319 - MPMX20_04531 0.89 +0.2 4,745,392 - -0.3 4,745,394 - -0.4 4,745,421 + +1.4 4,745,436 + -1.4 4,745,449 + +1.2 4,745,457 - -1.3 4,745,471 - -0.5 4,745,633 - +0.2 4,745,637 + -0.6 4,745,667 - -1.2 4,745,710 + -1.2 4,745,710 + -1.3 4,745,820 - MPMX20_04532 0.30 +1.7 4,745,893 + MPMX20_04532 0.53 -1.1 4,745,953 - MPMX20_04532 0.72 -1.2 4,745,953 - MPMX20_04532 0.72 -0.7 4,746,002 - MPMX20_04532 0.87 -0.8 4,746,117 - MPMX20_04533 0.12 -0.1 4,746,464 + +0.6
Or see this region's nucleotide sequence