Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03768 and MPMX20_03769 are separated by 161 nucleotides MPMX20_03769 and MPMX20_03770 are separated by 250 nucleotides MPMX20_03770 and MPMX20_03771 are separated by 45 nucleotides
MPMX20_03768: MPMX20_03768 - hypothetical protein, at 3,971,932 to 3,972,516
_03768
MPMX20_03769: MPMX20_03769 - Cell division protein ZapA, at 3,972,678 to 3,973,007
_03769
MPMX20_03770: MPMX20_03770 - 5-formyltetrahydrofolate cyclo-ligase, at 3,973,258 to 3,973,854
_03770
MPMX20_03771: MPMX20_03771 - D-3-phosphoglycerate dehydrogenase, at 3,973,900 to 3,975,132
_03771
Position (kb)
3973
3974 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3972.311 kb on + strand, within MPMX20_03768 at 3972.311 kb on + strand, within MPMX20_03768 at 3972.311 kb on + strand, within MPMX20_03768 at 3972.319 kb on - strand, within MPMX20_03768 at 3972.319 kb on - strand, within MPMX20_03768 at 3972.344 kb on + strand, within MPMX20_03768 at 3972.407 kb on + strand, within MPMX20_03768 at 3972.407 kb on + strand, within MPMX20_03768 at 3972.408 kb on - strand, within MPMX20_03768 at 3972.436 kb on + strand, within MPMX20_03768 at 3972.436 kb on + strand, within MPMX20_03768 at 3972.444 kb on - strand, within MPMX20_03768 at 3972.444 kb on - strand, within MPMX20_03768 at 3972.444 kb on - strand, within MPMX20_03768 at 3972.444 kb on - strand, within MPMX20_03768 at 3972.444 kb on - strand, within MPMX20_03768 at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.501 kb on + strand at 3972.509 kb on - strand at 3972.509 kb on - strand at 3972.509 kb on - strand at 3972.509 kb on - strand at 3972.509 kb on - strand at 3972.509 kb on - strand at 3972.509 kb on - strand at 3972.566 kb on + strand at 3972.583 kb on + strand at 3972.604 kb on - strand at 3972.638 kb on - strand at 3972.650 kb on - strand at 3972.655 kb on + strand at 3972.672 kb on + strand at 3972.673 kb on - strand at 3972.692 kb on - strand at 3972.749 kb on - strand, within MPMX20_03769 at 3972.862 kb on + strand, within MPMX20_03769 at 3972.910 kb on + strand, within MPMX20_03769 at 3972.910 kb on + strand, within MPMX20_03769 at 3972.918 kb on - strand, within MPMX20_03769 at 3972.918 kb on - strand, within MPMX20_03769 at 3972.953 kb on + strand, within MPMX20_03769 at 3972.961 kb on - strand, within MPMX20_03769 at 3973.088 kb on - strand at 3973.207 kb on - strand at 3973.342 kb on - strand, within MPMX20_03770 at 3973.388 kb on + strand, within MPMX20_03770 at 3973.417 kb on + strand, within MPMX20_03770 at 3973.470 kb on + strand, within MPMX20_03770 at 3973.547 kb on + strand, within MPMX20_03770 at 3973.547 kb on + strand, within MPMX20_03770 at 3973.555 kb on - strand, within MPMX20_03770 at 3973.557 kb on - strand, within MPMX20_03770 at 3973.639 kb on + strand, within MPMX20_03770 at 3973.762 kb on + strand, within MPMX20_03770 at 3973.767 kb on + strand, within MPMX20_03770 at 3973.841 kb on - strand at 3973.885 kb on - strand at 3973.885 kb on - strand at 3973.916 kb on - strand at 3973.935 kb on - strand at 3973.938 kb on + strand at 3973.946 kb on - strand at 3973.977 kb on - strand at 3974.003 kb on - strand at 3974.006 kb on + strand at 3974.014 kb on - strand at 3974.103 kb on - strand, within MPMX20_03771 at 3974.134 kb on - strand, within MPMX20_03771 at 3974.177 kb on - strand, within MPMX20_03771 at 3974.177 kb on - strand, within MPMX20_03771 at 3974.222 kb on + strand, within MPMX20_03771 at 3974.292 kb on + strand, within MPMX20_03771 at 3974.292 kb on + strand, within MPMX20_03771 at 3974.300 kb on - strand, within MPMX20_03771 at 3974.300 kb on - strand, within MPMX20_03771 at 3974.307 kb on - strand, within MPMX20_03771 at 3974.331 kb on - strand, within MPMX20_03771 at 3974.396 kb on - strand, within MPMX20_03771 at 3974.449 kb on - strand, within MPMX20_03771 at 3974.454 kb on - strand, within MPMX20_03771 at 3974.460 kb on + strand, within MPMX20_03771 at 3974.510 kb on - strand, within MPMX20_03771 at 3974.510 kb on - strand, within MPMX20_03771 at 3974.535 kb on + strand, within MPMX20_03771 at 3974.543 kb on - strand, within MPMX20_03771 at 3974.545 kb on + strand, within MPMX20_03771 at 3974.561 kb on + strand, within MPMX20_03771 at 3974.561 kb on + strand, within MPMX20_03771 at 3974.561 kb on + strand, within MPMX20_03771 at 3974.642 kb on + strand, within MPMX20_03771 at 3974.652 kb on + strand, within MPMX20_03771 at 3974.785 kb on + strand, within MPMX20_03771 at 3974.793 kb on - strand, within MPMX20_03771 at 3974.832 kb on - strand, within MPMX20_03771
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,972,311 + MPMX20_03768 0.65 -1.3 3,972,311 + MPMX20_03768 0.65 +1.0 3,972,311 + MPMX20_03768 0.65 +0.2 3,972,319 - MPMX20_03768 0.66 -1.6 3,972,319 - MPMX20_03768 0.66 +1.7 3,972,344 + MPMX20_03768 0.70 -0.2 3,972,407 + MPMX20_03768 0.81 +0.3 3,972,407 + MPMX20_03768 0.81 +0.4 3,972,408 - MPMX20_03768 0.81 -0.0 3,972,436 + MPMX20_03768 0.86 +1.8 3,972,436 + MPMX20_03768 0.86 -0.3 3,972,444 - MPMX20_03768 0.88 -1.1 3,972,444 - MPMX20_03768 0.88 -0.6 3,972,444 - MPMX20_03768 0.88 +1.4 3,972,444 - MPMX20_03768 0.88 +3.8 3,972,444 - MPMX20_03768 0.88 +2.8 3,972,501 + +1.4 3,972,501 + +0.8 3,972,501 + -1.2 3,972,501 + -1.4 3,972,501 + -0.3 3,972,501 + +1.3 3,972,501 + -0.5 3,972,501 + -1.0 3,972,501 + +1.5 3,972,501 + +1.8 3,972,501 + +0.5 3,972,501 + +0.2 3,972,501 + +1.5 3,972,501 + +1.5 3,972,501 + -1.2 3,972,501 + -2.5 3,972,501 + +0.6 3,972,509 - -0.6 3,972,509 - +0.2 3,972,509 - -2.3 3,972,509 - -0.2 3,972,509 - -0.4 3,972,509 - +0.0 3,972,509 - -0.6 3,972,566 + +0.8 3,972,583 + +2.4 3,972,604 - +2.8 3,972,638 - -2.2 3,972,650 - +0.2 3,972,655 + +2.8 3,972,672 + -1.1 3,972,673 - -1.6 3,972,692 - -3.3 3,972,749 - MPMX20_03769 0.22 -1.7 3,972,862 + MPMX20_03769 0.56 +1.8 3,972,910 + MPMX20_03769 0.70 -1.3 3,972,910 + MPMX20_03769 0.70 +0.2 3,972,918 - MPMX20_03769 0.73 -2.5 3,972,918 - MPMX20_03769 0.73 -1.6 3,972,953 + MPMX20_03769 0.83 +1.2 3,972,961 - MPMX20_03769 0.86 -2.1 3,973,088 - -0.4 3,973,207 - -1.3 3,973,342 - MPMX20_03770 0.14 +0.9 3,973,388 + MPMX20_03770 0.22 -0.3 3,973,417 + MPMX20_03770 0.27 -2.1 3,973,470 + MPMX20_03770 0.36 -0.9 3,973,547 + MPMX20_03770 0.48 -2.6 3,973,547 + MPMX20_03770 0.48 -0.9 3,973,555 - MPMX20_03770 0.50 -0.9 3,973,557 - MPMX20_03770 0.50 -2.3 3,973,639 + MPMX20_03770 0.64 +0.0 3,973,762 + MPMX20_03770 0.84 -1.6 3,973,767 + MPMX20_03770 0.85 -1.1 3,973,841 - -1.3 3,973,885 - +1.0 3,973,885 - -0.2 3,973,916 - +0.8 3,973,935 - +0.8 3,973,938 + -1.6 3,973,946 - -1.2 3,973,977 - +0.9 3,974,003 - +0.0 3,974,006 + +0.0 3,974,014 - -0.5 3,974,103 - MPMX20_03771 0.16 +0.7 3,974,134 - MPMX20_03771 0.19 +0.8 3,974,177 - MPMX20_03771 0.22 +0.4 3,974,177 - MPMX20_03771 0.22 -2.7 3,974,222 + MPMX20_03771 0.26 -1.8 3,974,292 + MPMX20_03771 0.32 +0.5 3,974,292 + MPMX20_03771 0.32 -0.3 3,974,300 - MPMX20_03771 0.32 +1.0 3,974,300 - MPMX20_03771 0.32 -0.5 3,974,307 - MPMX20_03771 0.33 -0.6 3,974,331 - MPMX20_03771 0.35 -1.2 3,974,396 - MPMX20_03771 0.40 +0.0 3,974,449 - MPMX20_03771 0.45 -0.8 3,974,454 - MPMX20_03771 0.45 -1.3 3,974,460 + MPMX20_03771 0.45 -1.2 3,974,510 - MPMX20_03771 0.49 +1.2 3,974,510 - MPMX20_03771 0.49 +0.0 3,974,535 + MPMX20_03771 0.52 +1.4 3,974,543 - MPMX20_03771 0.52 -2.4 3,974,545 + MPMX20_03771 0.52 -3.0 3,974,561 + MPMX20_03771 0.54 -1.5 3,974,561 + MPMX20_03771 0.54 +2.4 3,974,561 + MPMX20_03771 0.54 +0.5 3,974,642 + MPMX20_03771 0.60 -1.3 3,974,652 + MPMX20_03771 0.61 -1.7 3,974,785 + MPMX20_03771 0.72 -1.5 3,974,793 - MPMX20_03771 0.72 +0.1 3,974,832 - MPMX20_03771 0.76 +0.7
Or see this region's nucleotide sequence