Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03750 and MPMX20_03751 are separated by 307 nucleotides MPMX20_03751 and MPMX20_03752 are separated by 5 nucleotides MPMX20_03752 and MPMX20_03753 are separated by 23 nucleotides
MPMX20_03750: MPMX20_03750 - Peptide chain release factor RF2, at 3,951,965 to 3,952,846
_03750
MPMX20_03751: MPMX20_03751 - Single-stranded-DNA-specific exonuclease RecJ, at 3,953,154 to 3,954,887
_03751
MPMX20_03752: MPMX20_03752 - Thiol:disulfide interchange protein DsbC, at 3,954,893 to 3,955,606
_03752
MPMX20_03753: MPMX20_03753 - Tyrosine recombinase XerD, at 3,955,630 to 3,956,526
_03753
Position (kb)
3953
3954
3955 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3953.118 kb on - strand at 3953.183 kb on + strand at 3953.183 kb on + strand at 3953.183 kb on + strand at 3953.189 kb on - strand at 3953.191 kb on - strand at 3953.197 kb on - strand at 3953.234 kb on + strand at 3953.242 kb on - strand at 3953.293 kb on - strand at 3953.321 kb on - strand at 3953.321 kb on - strand at 3953.396 kb on - strand, within MPMX20_03751 at 3953.414 kb on - strand, within MPMX20_03751 at 3953.414 kb on - strand, within MPMX20_03751 at 3953.548 kb on + strand, within MPMX20_03751 at 3953.638 kb on - strand, within MPMX20_03751 at 3953.649 kb on + strand, within MPMX20_03751 at 3953.657 kb on - strand, within MPMX20_03751 at 3953.673 kb on + strand, within MPMX20_03751 at 3953.688 kb on + strand, within MPMX20_03751 at 3953.696 kb on - strand, within MPMX20_03751 at 3953.800 kb on + strand, within MPMX20_03751 at 3953.808 kb on - strand, within MPMX20_03751 at 3953.808 kb on - strand, within MPMX20_03751 at 3953.808 kb on - strand, within MPMX20_03751 at 3953.861 kb on + strand, within MPMX20_03751 at 3953.861 kb on + strand, within MPMX20_03751 at 3953.909 kb on + strand, within MPMX20_03751 at 3953.909 kb on + strand, within MPMX20_03751 at 3953.917 kb on - strand, within MPMX20_03751 at 3953.917 kb on - strand, within MPMX20_03751 at 3953.917 kb on - strand, within MPMX20_03751 at 3953.917 kb on - strand, within MPMX20_03751 at 3953.917 kb on - strand, within MPMX20_03751 at 3953.947 kb on + strand, within MPMX20_03751 at 3953.951 kb on - strand, within MPMX20_03751 at 3953.966 kb on + strand, within MPMX20_03751 at 3954.001 kb on - strand, within MPMX20_03751 at 3954.044 kb on - strand, within MPMX20_03751 at 3954.116 kb on - strand, within MPMX20_03751 at 3954.128 kb on + strand, within MPMX20_03751 at 3954.129 kb on + strand, within MPMX20_03751 at 3954.137 kb on - strand, within MPMX20_03751 at 3954.168 kb on + strand, within MPMX20_03751 at 3954.192 kb on + strand, within MPMX20_03751 at 3954.206 kb on + strand, within MPMX20_03751 at 3954.214 kb on - strand, within MPMX20_03751 at 3954.317 kb on - strand, within MPMX20_03751 at 3954.324 kb on - strand, within MPMX20_03751 at 3954.361 kb on - strand, within MPMX20_03751 at 3954.361 kb on - strand, within MPMX20_03751 at 3954.494 kb on + strand, within MPMX20_03751 at 3954.516 kb on - strand, within MPMX20_03751 at 3954.527 kb on + strand, within MPMX20_03751 at 3954.527 kb on + strand, within MPMX20_03751 at 3954.527 kb on + strand, within MPMX20_03751 at 3954.527 kb on + strand, within MPMX20_03751 at 3954.535 kb on - strand, within MPMX20_03751 at 3954.535 kb on - strand, within MPMX20_03751 at 3954.535 kb on - strand, within MPMX20_03751 at 3954.572 kb on + strand, within MPMX20_03751 at 3954.605 kb on + strand, within MPMX20_03751 at 3954.613 kb on - strand, within MPMX20_03751 at 3954.613 kb on - strand, within MPMX20_03751 at 3954.613 kb on - strand, within MPMX20_03751 at 3954.613 kb on - strand, within MPMX20_03751 at 3954.613 kb on - strand, within MPMX20_03751 at 3954.667 kb on - strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.749 kb on + strand at 3954.749 kb on + strand at 3954.757 kb on - strand at 3954.757 kb on - strand at 3954.757 kb on - strand at 3954.929 kb on - strand at 3954.951 kb on - strand at 3954.975 kb on - strand, within MPMX20_03752 at 3954.980 kb on + strand, within MPMX20_03752 at 3954.988 kb on - strand, within MPMX20_03752 at 3955.037 kb on - strand, within MPMX20_03752 at 3955.037 kb on - strand, within MPMX20_03752 at 3955.144 kb on + strand, within MPMX20_03752 at 3955.144 kb on + strand, within MPMX20_03752 at 3955.202 kb on - strand, within MPMX20_03752 at 3955.202 kb on - strand, within MPMX20_03752 at 3955.234 kb on + strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.326 kb on + strand, within MPMX20_03752 at 3955.369 kb on + strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.433 kb on - strand, within MPMX20_03752 at 3955.435 kb on + strand, within MPMX20_03752 at 3955.490 kb on - strand, within MPMX20_03752 at 3955.492 kb on - strand, within MPMX20_03752 at 3955.494 kb on - strand, within MPMX20_03752 at 3955.503 kb on + strand, within MPMX20_03752 at 3955.523 kb on + strand, within MPMX20_03752 at 3955.533 kb on - strand, within MPMX20_03752 at 3955.580 kb on + strand at 3955.645 kb on - strand at 3955.645 kb on - strand at 3955.737 kb on - strand, within MPMX20_03753 at 3955.830 kb on + strand, within MPMX20_03753
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,953,118 - +0.8 3,953,183 + +1.4 3,953,183 + +2.8 3,953,183 + +0.2 3,953,189 - -1.5 3,953,191 - -1.0 3,953,197 - -0.8 3,953,234 + +1.8 3,953,242 - -0.5 3,953,293 - -1.0 3,953,321 - -1.4 3,953,321 - -0.2 3,953,396 - MPMX20_03751 0.14 -0.8 3,953,414 - MPMX20_03751 0.15 -1.0 3,953,414 - MPMX20_03751 0.15 -0.5 3,953,548 + MPMX20_03751 0.23 -0.2 3,953,638 - MPMX20_03751 0.28 -0.8 3,953,649 + MPMX20_03751 0.29 +0.7 3,953,657 - MPMX20_03751 0.29 -2.0 3,953,673 + MPMX20_03751 0.30 -0.5 3,953,688 + MPMX20_03751 0.31 -0.9 3,953,696 - MPMX20_03751 0.31 -0.2 3,953,800 + MPMX20_03751 0.37 -1.3 3,953,808 - MPMX20_03751 0.38 +2.8 3,953,808 - MPMX20_03751 0.38 +0.8 3,953,808 - MPMX20_03751 0.38 +0.2 3,953,861 + MPMX20_03751 0.41 +1.2 3,953,861 + MPMX20_03751 0.41 +0.0 3,953,909 + MPMX20_03751 0.44 -1.8 3,953,909 + MPMX20_03751 0.44 -0.4 3,953,917 - MPMX20_03751 0.44 +1.8 3,953,917 - MPMX20_03751 0.44 +0.2 3,953,917 - MPMX20_03751 0.44 +0.6 3,953,917 - MPMX20_03751 0.44 -1.7 3,953,917 - MPMX20_03751 0.44 -0.8 3,953,947 + MPMX20_03751 0.46 -1.8 3,953,951 - MPMX20_03751 0.46 +0.8 3,953,966 + MPMX20_03751 0.47 +3.8 3,954,001 - MPMX20_03751 0.49 -1.8 3,954,044 - MPMX20_03751 0.51 -2.0 3,954,116 - MPMX20_03751 0.55 +0.9 3,954,128 + MPMX20_03751 0.56 +0.0 3,954,129 + MPMX20_03751 0.56 +1.8 3,954,137 - MPMX20_03751 0.57 +0.2 3,954,168 + MPMX20_03751 0.58 -2.2 3,954,192 + MPMX20_03751 0.60 -0.6 3,954,206 + MPMX20_03751 0.61 +1.1 3,954,214 - MPMX20_03751 0.61 +0.8 3,954,317 - MPMX20_03751 0.67 +2.5 3,954,324 - MPMX20_03751 0.67 +0.0 3,954,361 - MPMX20_03751 0.70 -0.5 3,954,361 - MPMX20_03751 0.70 +0.3 3,954,494 + MPMX20_03751 0.77 -0.5 3,954,516 - MPMX20_03751 0.79 +0.4 3,954,527 + MPMX20_03751 0.79 +2.8 3,954,527 + MPMX20_03751 0.79 +0.2 3,954,527 + MPMX20_03751 0.79 -1.7 3,954,527 + MPMX20_03751 0.79 -1.8 3,954,535 - MPMX20_03751 0.80 -1.4 3,954,535 - MPMX20_03751 0.80 +1.6 3,954,535 - MPMX20_03751 0.80 -1.1 3,954,572 + MPMX20_03751 0.82 -0.7 3,954,605 + MPMX20_03751 0.84 -1.2 3,954,613 - MPMX20_03751 0.84 +0.2 3,954,613 - MPMX20_03751 0.84 -1.4 3,954,613 - MPMX20_03751 0.84 -0.5 3,954,613 - MPMX20_03751 0.84 +0.8 3,954,613 - MPMX20_03751 0.84 +0.7 3,954,667 - MPMX20_03751 0.87 +1.0 3,954,676 + MPMX20_03751 0.88 -0.0 3,954,676 + MPMX20_03751 0.88 +1.2 3,954,676 + MPMX20_03751 0.88 +1.5 3,954,676 + MPMX20_03751 0.88 +0.5 3,954,676 + MPMX20_03751 0.88 -0.2 3,954,684 - MPMX20_03751 0.88 -0.2 3,954,684 - MPMX20_03751 0.88 +0.0 3,954,684 - MPMX20_03751 0.88 -0.8 3,954,684 - MPMX20_03751 0.88 -0.2 3,954,684 - MPMX20_03751 0.88 -2.9 3,954,684 - MPMX20_03751 0.88 -0.9 3,954,684 - MPMX20_03751 0.88 -0.3 3,954,749 + +0.3 3,954,749 + -0.3 3,954,757 - -2.1 3,954,757 - -1.7 3,954,757 - -0.3 3,954,929 - +1.2 3,954,951 - +0.4 3,954,975 - MPMX20_03752 0.11 +1.2 3,954,980 + MPMX20_03752 0.12 -0.8 3,954,988 - MPMX20_03752 0.13 -0.3 3,955,037 - MPMX20_03752 0.20 -1.0 3,955,037 - MPMX20_03752 0.20 +1.0 3,955,144 + MPMX20_03752 0.35 +0.2 3,955,144 + MPMX20_03752 0.35 +1.1 3,955,202 - MPMX20_03752 0.43 +1.2 3,955,202 - MPMX20_03752 0.43 +0.5 3,955,234 + MPMX20_03752 0.48 -0.9 3,955,242 - MPMX20_03752 0.49 +1.7 3,955,242 - MPMX20_03752 0.49 -2.8 3,955,242 - MPMX20_03752 0.49 -0.6 3,955,326 + MPMX20_03752 0.61 +0.3 3,955,369 + MPMX20_03752 0.67 +1.0 3,955,377 - MPMX20_03752 0.68 +1.1 3,955,377 - MPMX20_03752 0.68 +0.0 3,955,377 - MPMX20_03752 0.68 -0.3 3,955,377 - MPMX20_03752 0.68 +2.8 3,955,377 - MPMX20_03752 0.68 +1.5 3,955,433 - MPMX20_03752 0.76 -2.0 3,955,435 + MPMX20_03752 0.76 +0.1 3,955,490 - MPMX20_03752 0.84 +1.2 3,955,492 - MPMX20_03752 0.84 -0.9 3,955,494 - MPMX20_03752 0.84 +0.0 3,955,503 + MPMX20_03752 0.85 +0.3 3,955,523 + MPMX20_03752 0.88 +0.1 3,955,533 - MPMX20_03752 0.90 +4.6 3,955,580 + +0.0 3,955,645 - -2.2 3,955,645 - -1.1 3,955,737 - MPMX20_03753 0.12 +1.2 3,955,830 + MPMX20_03753 0.22 +1.4
Or see this region's nucleotide sequence