Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03682 and MPMX20_03683 overlap by 4 nucleotides MPMX20_03683 and MPMX20_03684 overlap by 4 nucleotides
MPMX20_03682: MPMX20_03682 - RecBCD enzyme subunit RecD, at 3,875,023 to 3,876,843
_03682
MPMX20_03683: MPMX20_03683 - RecBCD enzyme subunit RecB, at 3,876,840 to 3,880,382
_03683
MPMX20_03684: MPMX20_03684 - Protease 3, at 3,880,379 to 3,883,261
_03684
Position (kb)
3876
3877
3878
3879
3880
3881 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3875.894 kb on - strand, within MPMX20_03682 at 3875.894 kb on - strand, within MPMX20_03682 at 3875.895 kb on - strand, within MPMX20_03682 at 3875.949 kb on - strand, within MPMX20_03682 at 3875.995 kb on - strand, within MPMX20_03682 at 3876.157 kb on + strand, within MPMX20_03682 at 3876.189 kb on - strand, within MPMX20_03682 at 3876.269 kb on + strand, within MPMX20_03682 at 3876.364 kb on + strand, within MPMX20_03682 at 3876.364 kb on + strand, within MPMX20_03682 at 3876.372 kb on - strand, within MPMX20_03682 at 3876.402 kb on + strand, within MPMX20_03682 at 3876.587 kb on + strand, within MPMX20_03682 at 3876.597 kb on + strand, within MPMX20_03682 at 3876.597 kb on - strand, within MPMX20_03682 at 3876.640 kb on + strand, within MPMX20_03682 at 3876.700 kb on + strand at 3876.783 kb on + strand at 3876.791 kb on - strand at 3876.793 kb on + strand at 3876.802 kb on + strand at 3876.941 kb on + strand at 3876.964 kb on - strand at 3877.039 kb on + strand at 3877.039 kb on + strand at 3877.047 kb on - strand at 3877.109 kb on - strand at 3877.373 kb on - strand, within MPMX20_03683 at 3877.394 kb on - strand, within MPMX20_03683 at 3877.578 kb on - strand, within MPMX20_03683 at 3877.688 kb on + strand, within MPMX20_03683 at 3877.962 kb on + strand, within MPMX20_03683 at 3877.970 kb on - strand, within MPMX20_03683 at 3877.985 kb on - strand, within MPMX20_03683 at 3877.991 kb on - strand, within MPMX20_03683 at 3878.018 kb on + strand, within MPMX20_03683 at 3878.018 kb on + strand, within MPMX20_03683 at 3878.023 kb on + strand, within MPMX20_03683 at 3878.147 kb on - strand, within MPMX20_03683 at 3878.210 kb on + strand, within MPMX20_03683 at 3878.215 kb on - strand, within MPMX20_03683 at 3878.394 kb on - strand, within MPMX20_03683 at 3878.540 kb on - strand, within MPMX20_03683 at 3878.634 kb on + strand, within MPMX20_03683 at 3878.732 kb on + strand, within MPMX20_03683 at 3878.823 kb on - strand, within MPMX20_03683 at 3878.828 kb on - strand, within MPMX20_03683 at 3878.859 kb on + strand, within MPMX20_03683 at 3878.905 kb on - strand, within MPMX20_03683 at 3879.161 kb on - strand, within MPMX20_03683 at 3879.163 kb on + strand, within MPMX20_03683 at 3879.270 kb on + strand, within MPMX20_03683 at 3879.270 kb on + strand, within MPMX20_03683 at 3879.278 kb on - strand, within MPMX20_03683 at 3879.278 kb on - strand, within MPMX20_03683 at 3879.294 kb on + strand, within MPMX20_03683 at 3879.315 kb on + strand, within MPMX20_03683 at 3879.327 kb on + strand, within MPMX20_03683 at 3879.484 kb on + strand, within MPMX20_03683 at 3879.787 kb on - strand, within MPMX20_03683 at 3880.214 kb on - strand at 3880.283 kb on - strand at 3880.296 kb on - strand at 3880.354 kb on + strand at 3880.362 kb on - strand at 3880.376 kb on + strand at 3880.427 kb on + strand at 3880.427 kb on + strand at 3880.435 kb on - strand at 3880.435 kb on - strand at 3880.435 kb on - strand at 3880.450 kb on + strand at 3880.480 kb on - strand at 3880.636 kb on + strand at 3880.644 kb on - strand at 3880.705 kb on + strand, within MPMX20_03684 at 3880.778 kb on + strand, within MPMX20_03684 at 3880.792 kb on + strand, within MPMX20_03684 at 3880.817 kb on + strand, within MPMX20_03684 at 3880.853 kb on + strand, within MPMX20_03684 at 3880.879 kb on + strand, within MPMX20_03684 at 3880.881 kb on + strand, within MPMX20_03684 at 3880.884 kb on - strand, within MPMX20_03684 at 3880.922 kb on + strand, within MPMX20_03684 at 3880.927 kb on + strand, within MPMX20_03684 at 3880.927 kb on + strand, within MPMX20_03684 at 3880.952 kb on - strand, within MPMX20_03684 at 3880.952 kb on - strand, within MPMX20_03684 at 3880.999 kb on - strand, within MPMX20_03684 at 3881.118 kb on + strand, within MPMX20_03684 at 3881.126 kb on - strand, within MPMX20_03684 at 3881.126 kb on - strand, within MPMX20_03684 at 3881.167 kb on - strand, within MPMX20_03684 at 3881.190 kb on - strand, within MPMX20_03684 at 3881.203 kb on + strand, within MPMX20_03684 at 3881.212 kb on + strand, within MPMX20_03684 at 3881.222 kb on + strand, within MPMX20_03684 at 3881.222 kb on + strand, within MPMX20_03684 at 3881.295 kb on + strand, within MPMX20_03684 at 3881.297 kb on + strand, within MPMX20_03684 at 3881.305 kb on - strand, within MPMX20_03684 at 3881.312 kb on - strand, within MPMX20_03684 at 3881.312 kb on - strand, within MPMX20_03684 at 3881.354 kb on - strand, within MPMX20_03684
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,875,894 - MPMX20_03682 0.48 -0.5 3,875,894 - MPMX20_03682 0.48 -1.4 3,875,895 - MPMX20_03682 0.48 +2.8 3,875,949 - MPMX20_03682 0.51 -0.6 3,875,995 - MPMX20_03682 0.53 -2.9 3,876,157 + MPMX20_03682 0.62 -0.2 3,876,189 - MPMX20_03682 0.64 +0.1 3,876,269 + MPMX20_03682 0.68 -2.8 3,876,364 + MPMX20_03682 0.74 +0.3 3,876,364 + MPMX20_03682 0.74 -1.5 3,876,372 - MPMX20_03682 0.74 -3.3 3,876,402 + MPMX20_03682 0.76 -1.7 3,876,587 + MPMX20_03682 0.86 -1.1 3,876,597 + MPMX20_03682 0.86 -1.5 3,876,597 - MPMX20_03682 0.86 -2.7 3,876,640 + MPMX20_03682 0.89 +0.7 3,876,700 + -0.2 3,876,783 + -1.4 3,876,791 - -1.0 3,876,793 + +2.2 3,876,802 + -0.6 3,876,941 + -0.2 3,876,964 - +2.8 3,877,039 + +0.8 3,877,039 + +0.5 3,877,047 - +0.0 3,877,109 - -0.5 3,877,373 - MPMX20_03683 0.15 -0.2 3,877,394 - MPMX20_03683 0.16 +0.8 3,877,578 - MPMX20_03683 0.21 +0.5 3,877,688 + MPMX20_03683 0.24 +1.2 3,877,962 + MPMX20_03683 0.32 -0.6 3,877,970 - MPMX20_03683 0.32 +2.8 3,877,985 - MPMX20_03683 0.32 +0.0 3,877,991 - MPMX20_03683 0.32 +0.5 3,878,018 + MPMX20_03683 0.33 +0.2 3,878,018 + MPMX20_03683 0.33 +0.5 3,878,023 + MPMX20_03683 0.33 +1.8 3,878,147 - MPMX20_03683 0.37 +2.8 3,878,210 + MPMX20_03683 0.39 -0.5 3,878,215 - MPMX20_03683 0.39 +1.2 3,878,394 - MPMX20_03683 0.44 +2.8 3,878,540 - MPMX20_03683 0.48 +2.8 3,878,634 + MPMX20_03683 0.51 -0.2 3,878,732 + MPMX20_03683 0.53 +1.2 3,878,823 - MPMX20_03683 0.56 -0.5 3,878,828 - MPMX20_03683 0.56 +0.2 3,878,859 + MPMX20_03683 0.57 +0.8 3,878,905 - MPMX20_03683 0.58 -0.2 3,879,161 - MPMX20_03683 0.66 +0.8 3,879,163 + MPMX20_03683 0.66 +1.8 3,879,270 + MPMX20_03683 0.69 +0.0 3,879,270 + MPMX20_03683 0.69 +1.2 3,879,278 - MPMX20_03683 0.69 +0.8 3,879,278 - MPMX20_03683 0.69 -0.2 3,879,294 + MPMX20_03683 0.69 +1.8 3,879,315 + MPMX20_03683 0.70 +2.8 3,879,327 + MPMX20_03683 0.70 +0.0 3,879,484 + MPMX20_03683 0.75 -0.2 3,879,787 - MPMX20_03683 0.83 +1.8 3,880,214 - +1.2 3,880,283 - +2.8 3,880,296 - +0.8 3,880,354 + +0.4 3,880,362 - +0.8 3,880,376 + -0.1 3,880,427 + +0.5 3,880,427 + -1.5 3,880,435 - +0.2 3,880,435 - -0.4 3,880,435 - -0.4 3,880,450 + -1.0 3,880,480 - -3.3 3,880,636 + -3.5 3,880,644 - +1.8 3,880,705 + MPMX20_03684 0.11 -1.3 3,880,778 + MPMX20_03684 0.14 +2.8 3,880,792 + MPMX20_03684 0.14 -1.0 3,880,817 + MPMX20_03684 0.15 +0.0 3,880,853 + MPMX20_03684 0.16 -1.0 3,880,879 + MPMX20_03684 0.17 -0.6 3,880,881 + MPMX20_03684 0.17 -1.6 3,880,884 - MPMX20_03684 0.18 -0.2 3,880,922 + MPMX20_03684 0.19 +0.3 3,880,927 + MPMX20_03684 0.19 +2.8 3,880,927 + MPMX20_03684 0.19 -1.3 3,880,952 - MPMX20_03684 0.20 -1.5 3,880,952 - MPMX20_03684 0.20 -0.8 3,880,999 - MPMX20_03684 0.22 +1.2 3,881,118 + MPMX20_03684 0.26 -0.2 3,881,126 - MPMX20_03684 0.26 +0.5 3,881,126 - MPMX20_03684 0.26 -2.1 3,881,167 - MPMX20_03684 0.27 +0.8 3,881,190 - MPMX20_03684 0.28 +2.2 3,881,203 + MPMX20_03684 0.29 -2.3 3,881,212 + MPMX20_03684 0.29 -0.0 3,881,222 + MPMX20_03684 0.29 +2.2 3,881,222 + MPMX20_03684 0.29 +0.2 3,881,295 + MPMX20_03684 0.32 -1.7 3,881,297 + MPMX20_03684 0.32 +0.4 3,881,305 - MPMX20_03684 0.32 +2.4 3,881,312 - MPMX20_03684 0.32 +0.5 3,881,312 - MPMX20_03684 0.32 +2.8 3,881,354 - MPMX20_03684 0.34 -1.2
Or see this region's nucleotide sequence