Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03451

Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03450 and MPMX20_03451 are separated by 204 nucleotidesMPMX20_03451 and MPMX20_03452 are separated by 69 nucleotidesMPMX20_03452 and MPMX20_03453 are separated by 35 nucleotides MPMX20_03450: MPMX20_03450 - putative tRNA/rRNA methyltransferase YfiF, at 3,637,423 to 3,638,508 _03450 MPMX20_03451: MPMX20_03451 - Thioredoxin 2, at 3,638,713 to 3,639,132 _03451 MPMX20_03452: MPMX20_03452 - hypothetical protein, at 3,639,202 to 3,639,900 _03452 MPMX20_03453: MPMX20_03453 - Peptidyl-lysine N-acetyltransferase Pat, at 3,639,936 to 3,642,599 _03453 Position (kb) 3638 3639 3640Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3637.724 kb on - strand, within MPMX20_03450at 3637.772 kb on + strand, within MPMX20_03450at 3637.780 kb on - strand, within MPMX20_03450at 3637.843 kb on + strand, within MPMX20_03450at 3637.887 kb on + strand, within MPMX20_03450at 3637.895 kb on - strand, within MPMX20_03450at 3637.895 kb on - strand, within MPMX20_03450at 3637.895 kb on - strand, within MPMX20_03450at 3637.897 kb on + strand, within MPMX20_03450at 3637.936 kb on + strand, within MPMX20_03450at 3637.961 kb on - strand, within MPMX20_03450at 3637.982 kb on + strand, within MPMX20_03450at 3637.995 kb on + strand, within MPMX20_03450at 3638.003 kb on + strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.011 kb on - strand, within MPMX20_03450at 3638.021 kb on + strand, within MPMX20_03450at 3638.029 kb on - strand, within MPMX20_03450at 3638.057 kb on - strand, within MPMX20_03450at 3638.057 kb on - strand, within MPMX20_03450at 3638.069 kb on - strand, within MPMX20_03450at 3638.090 kb on + strand, within MPMX20_03450at 3638.093 kb on - strand, within MPMX20_03450at 3638.093 kb on - strand, within MPMX20_03450at 3638.098 kb on - strand, within MPMX20_03450at 3638.104 kb on - strand, within MPMX20_03450at 3638.104 kb on - strand, within MPMX20_03450at 3638.311 kb on + strand, within MPMX20_03450at 3638.406 kb on - strandat 3638.445 kb on + strandat 3638.468 kb on + strandat 3638.468 kb on + strandat 3638.468 kb on + strandat 3638.476 kb on - strandat 3638.476 kb on - strandat 3638.476 kb on - strandat 3638.531 kb on - strandat 3638.553 kb on + strandat 3638.593 kb on + strandat 3638.593 kb on + strandat 3638.601 kb on - strandat 3638.648 kb on + strandat 3638.656 kb on - strandat 3638.698 kb on + strandat 3638.698 kb on + strandat 3638.707 kb on - strandat 3638.710 kb on + strandat 3638.718 kb on - strandat 3638.718 kb on - strandat 3638.751 kb on + strandat 3638.798 kb on + strand, within MPMX20_03451at 3638.798 kb on + strand, within MPMX20_03451at 3638.798 kb on + strand, within MPMX20_03451at 3638.798 kb on + strand, within MPMX20_03451at 3638.845 kb on - strand, within MPMX20_03451at 3638.845 kb on - strand, within MPMX20_03451at 3638.900 kb on + strand, within MPMX20_03451at 3638.908 kb on - strand, within MPMX20_03451at 3638.913 kb on - strand, within MPMX20_03451at 3638.979 kb on + strand, within MPMX20_03451at 3639.072 kb on - strand, within MPMX20_03451at 3639.075 kb on + strand, within MPMX20_03451at 3639.133 kb on + strandat 3639.154 kb on + strandat 3639.159 kb on + strandat 3639.167 kb on - strandat 3639.206 kb on - strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.238 kb on + strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.246 kb on - strandat 3639.335 kb on + strand, within MPMX20_03452at 3639.343 kb on - strand, within MPMX20_03452at 3639.348 kb on - strand, within MPMX20_03452at 3639.373 kb on + strand, within MPMX20_03452at 3639.381 kb on - strand, within MPMX20_03452at 3639.464 kb on + strand, within MPMX20_03452at 3639.486 kb on + strand, within MPMX20_03452at 3639.545 kb on - strand, within MPMX20_03452at 3639.605 kb on - strand, within MPMX20_03452at 3639.615 kb on + strand, within MPMX20_03452at 3639.733 kb on + strand, within MPMX20_03452at 3639.733 kb on + strand, within MPMX20_03452at 3639.741 kb on - strand, within MPMX20_03452at 3639.766 kb on + strand, within MPMX20_03452at 3639.864 kb on + strandat 3639.957 kb on - strandat 3640.030 kb on + strandat 3640.085 kb on + strandat 3640.095 kb on + strandat 3640.095 kb on + strandat 3640.103 kb on - strandat 3640.103 kb on - strandat 3640.103 kb on - strandat 3640.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
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3,637,724 - MPMX20_03450 0.28 -1.3
3,637,772 + MPMX20_03450 0.32 -0.7
3,637,780 - MPMX20_03450 0.33 +1.3
3,637,843 + MPMX20_03450 0.39 +0.0
3,637,887 + MPMX20_03450 0.43 +0.1
3,637,895 - MPMX20_03450 0.43 +1.8
3,637,895 - MPMX20_03450 0.43 -0.9
3,637,895 - MPMX20_03450 0.43 -0.5
3,637,897 + MPMX20_03450 0.44 +0.1
3,637,936 + MPMX20_03450 0.47 -0.8
3,637,961 - MPMX20_03450 0.50 -1.4
3,637,982 + MPMX20_03450 0.51 -0.3
3,637,995 + MPMX20_03450 0.53 +0.2
3,638,003 + MPMX20_03450 0.53 -2.1
3,638,011 - MPMX20_03450 0.54 +0.9
3,638,011 - MPMX20_03450 0.54 +0.5
3,638,011 - MPMX20_03450 0.54 +2.1
3,638,011 - MPMX20_03450 0.54 +2.0
3,638,021 + MPMX20_03450 0.55 +3.3
3,638,029 - MPMX20_03450 0.56 +0.3
3,638,057 - MPMX20_03450 0.58 +0.5
3,638,057 - MPMX20_03450 0.58 +0.8
3,638,069 - MPMX20_03450 0.59 -0.3
3,638,090 + MPMX20_03450 0.61 +1.2
3,638,093 - MPMX20_03450 0.62 +0.1
3,638,093 - MPMX20_03450 0.62 -1.3
3,638,098 - MPMX20_03450 0.62 +0.1
3,638,104 - MPMX20_03450 0.63 +1.8
3,638,104 - MPMX20_03450 0.63 +1.7
3,638,311 + MPMX20_03450 0.82 -0.3
3,638,406 - +0.4
3,638,445 + +1.2
3,638,468 + -0.8
3,638,468 + +0.0
3,638,468 + -0.6
3,638,476 - -0.1
3,638,476 - -1.7
3,638,476 - -1.4
3,638,531 - +0.2
3,638,553 + -1.2
3,638,593 + -0.6
3,638,593 + +0.2
3,638,601 - -1.3
3,638,648 + -1.1
3,638,656 - -0.6
3,638,698 + -1.3
3,638,698 + -2.0
3,638,707 - -2.4
3,638,710 + +2.8
3,638,718 - +0.5
3,638,718 - +0.0
3,638,751 + -0.3
3,638,798 + MPMX20_03451 0.20 -0.9
3,638,798 + MPMX20_03451 0.20 -0.5
3,638,798 + MPMX20_03451 0.20 +0.7
3,638,798 + MPMX20_03451 0.20 -0.8
3,638,845 - MPMX20_03451 0.31 -1.1
3,638,845 - MPMX20_03451 0.31 -3.8
3,638,900 + MPMX20_03451 0.45 -3.8
3,638,908 - MPMX20_03451 0.46 -1.3
3,638,913 - MPMX20_03451 0.48 -1.3
3,638,979 + MPMX20_03451 0.63 -1.7
3,639,072 - MPMX20_03451 0.85 +1.0
3,639,075 + MPMX20_03451 0.86 -0.5
3,639,133 + +0.2
3,639,154 + +0.8
3,639,159 + -0.4
3,639,167 - -1.3
3,639,206 - +0.5
3,639,238 + -0.9
3,639,238 + +0.3
3,639,238 + -0.9
3,639,238 + -2.0
3,639,238 + +0.0
3,639,238 + +0.6
3,639,238 + -2.1
3,639,246 - -0.3
3,639,246 - +1.2
3,639,246 - -1.0
3,639,246 - -0.2
3,639,246 - -0.9
3,639,246 - -1.0
3,639,246 - -1.3
3,639,335 + MPMX20_03452 0.19 +0.5
3,639,343 - MPMX20_03452 0.20 -1.6
3,639,348 - MPMX20_03452 0.21 -0.3
3,639,373 + MPMX20_03452 0.24 -0.1
3,639,381 - MPMX20_03452 0.26 -1.8
3,639,464 + MPMX20_03452 0.37 +1.9
3,639,486 + MPMX20_03452 0.41 -0.0
3,639,545 - MPMX20_03452 0.49 -1.3
3,639,605 - MPMX20_03452 0.58 -1.2
3,639,615 + MPMX20_03452 0.59 -0.4
3,639,733 + MPMX20_03452 0.76 -0.8
3,639,733 + MPMX20_03452 0.76 +1.8
3,639,741 - MPMX20_03452 0.77 -0.3
3,639,766 + MPMX20_03452 0.81 -0.0
3,639,864 + +1.2
3,639,957 - +3.4
3,640,030 + -1.1
3,640,085 + +0.0
3,640,095 + +0.5
3,640,095 + +0.4
3,640,103 - +0.2
3,640,103 - -1.3
3,640,103 - -0.4
3,640,127 + -0.8

Or see this region's nucleotide sequence