Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03447 and MPMX20_03448 are separated by 53 nucleotides MPMX20_03448 and MPMX20_03449 are separated by 314 nucleotides MPMX20_03449 and MPMX20_03450 are separated by 45 nucleotides
MPMX20_03447: MPMX20_03447 - ATP-dependent RNA helicase SrmB, at 3,634,608 to 3,635,936
_03447
MPMX20_03448: MPMX20_03448 - Autonomous glycyl radical cofactor, at 3,635,990 to 3,636,373
_03448
MPMX20_03449: MPMX20_03449 - Uracil-DNA glycosylase, at 3,636,688 to 3,637,377
_03449
MPMX20_03450: MPMX20_03450 - putative tRNA/rRNA methyltransferase YfiF, at 3,637,423 to 3,638,508
_03450
Position (kb)
3636
3637
3638 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.988 kb on + strand at 3635.988 kb on + strand at 3635.996 kb on - strand at 3635.997 kb on - strand at 3636.009 kb on - strand at 3636.036 kb on + strand, within MPMX20_03448 at 3636.042 kb on - strand, within MPMX20_03448 at 3636.042 kb on - strand, within MPMX20_03448 at 3636.058 kb on - strand, within MPMX20_03448 at 3636.066 kb on - strand, within MPMX20_03448 at 3636.083 kb on + strand, within MPMX20_03448 at 3636.083 kb on + strand, within MPMX20_03448 at 3636.176 kb on - strand, within MPMX20_03448 at 3636.274 kb on + strand, within MPMX20_03448 at 3636.282 kb on - strand, within MPMX20_03448 at 3636.282 kb on - strand, within MPMX20_03448 at 3636.321 kb on + strand, within MPMX20_03448 at 3636.372 kb on - strand at 3636.383 kb on + strand at 3636.383 kb on + strand at 3636.383 kb on + strand at 3636.391 kb on - strand at 3636.393 kb on + strand at 3636.401 kb on - strand at 3636.401 kb on - strand at 3636.648 kb on + strand at 3636.655 kb on - strand at 3636.659 kb on + strand at 3636.755 kb on - strand at 3636.790 kb on - strand, within MPMX20_03449 at 3636.934 kb on - strand, within MPMX20_03449 at 3636.935 kb on + strand, within MPMX20_03449 at 3636.992 kb on + strand, within MPMX20_03449 at 3637.000 kb on - strand, within MPMX20_03449 at 3637.015 kb on - strand, within MPMX20_03449 at 3637.067 kb on - strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.233 kb on + strand, within MPMX20_03449 at 3637.241 kb on - strand, within MPMX20_03449 at 3637.370 kb on - strand at 3637.372 kb on + strand at 3637.411 kb on - strand at 3637.420 kb on + strand at 3637.428 kb on - strand at 3637.428 kb on - strand at 3637.456 kb on + strand at 3637.519 kb on + strand at 3637.544 kb on + strand, within MPMX20_03450 at 3637.596 kb on + strand, within MPMX20_03450 at 3637.671 kb on + strand, within MPMX20_03450 at 3637.679 kb on - strand, within MPMX20_03450 at 3637.724 kb on - strand, within MPMX20_03450 at 3637.772 kb on + strand, within MPMX20_03450 at 3637.780 kb on - strand, within MPMX20_03450 at 3637.843 kb on + strand, within MPMX20_03450 at 3637.887 kb on + strand, within MPMX20_03450 at 3637.895 kb on - strand, within MPMX20_03450 at 3637.895 kb on - strand, within MPMX20_03450 at 3637.895 kb on - strand, within MPMX20_03450 at 3637.897 kb on + strand, within MPMX20_03450 at 3637.936 kb on + strand, within MPMX20_03450 at 3637.961 kb on - strand, within MPMX20_03450 at 3637.982 kb on + strand, within MPMX20_03450 at 3637.995 kb on + strand, within MPMX20_03450 at 3638.003 kb on + strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.021 kb on + strand, within MPMX20_03450 at 3638.029 kb on - strand, within MPMX20_03450 at 3638.057 kb on - strand, within MPMX20_03450 at 3638.057 kb on - strand, within MPMX20_03450 at 3638.069 kb on - strand, within MPMX20_03450 at 3638.090 kb on + strand, within MPMX20_03450 at 3638.093 kb on - strand, within MPMX20_03450 at 3638.093 kb on - strand, within MPMX20_03450 at 3638.098 kb on - strand, within MPMX20_03450 at 3638.104 kb on - strand, within MPMX20_03450 at 3638.104 kb on - strand, within MPMX20_03450 at 3638.311 kb on + strand, within MPMX20_03450
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,635,755 + MPMX20_03447 0.86 +0.2 3,635,755 + MPMX20_03447 0.86 -0.1 3,635,755 + MPMX20_03447 0.86 +1.5 3,635,755 + MPMX20_03447 0.86 +2.3 3,635,755 + MPMX20_03447 0.86 +1.9 3,635,755 + MPMX20_03447 0.86 +0.5 3,635,755 + MPMX20_03447 0.86 +2.1 3,635,755 + MPMX20_03447 0.86 +1.3 3,635,763 - MPMX20_03447 0.87 +1.5 3,635,763 - MPMX20_03447 0.87 +1.2 3,635,763 - MPMX20_03447 0.87 +1.3 3,635,988 + -1.5 3,635,988 + +0.5 3,635,996 - -0.5 3,635,997 - -0.2 3,636,009 - +1.0 3,636,036 + MPMX20_03448 0.12 -1.5 3,636,042 - MPMX20_03448 0.14 +0.4 3,636,042 - MPMX20_03448 0.14 +1.5 3,636,058 - MPMX20_03448 0.18 -0.5 3,636,066 - MPMX20_03448 0.20 -0.8 3,636,083 + MPMX20_03448 0.24 +0.6 3,636,083 + MPMX20_03448 0.24 -1.1 3,636,176 - MPMX20_03448 0.48 -1.3 3,636,274 + MPMX20_03448 0.74 +0.7 3,636,282 - MPMX20_03448 0.76 -0.8 3,636,282 - MPMX20_03448 0.76 -0.6 3,636,321 + MPMX20_03448 0.86 +4.4 3,636,372 - -0.5 3,636,383 + -0.0 3,636,383 + +0.8 3,636,383 + +0.5 3,636,391 - +0.2 3,636,393 + -0.4 3,636,401 - -1.7 3,636,401 - -0.7 3,636,648 + -2.1 3,636,655 - +0.2 3,636,659 + -1.0 3,636,755 - +0.8 3,636,790 - MPMX20_03449 0.15 +0.8 3,636,934 - MPMX20_03449 0.36 +0.8 3,636,935 + MPMX20_03449 0.36 -2.3 3,636,992 + MPMX20_03449 0.44 -2.9 3,637,000 - MPMX20_03449 0.45 -1.6 3,637,015 - MPMX20_03449 0.47 +0.4 3,637,067 - MPMX20_03449 0.55 -1.7 3,637,099 + MPMX20_03449 0.60 -1.6 3,637,099 + MPMX20_03449 0.60 +0.5 3,637,099 + MPMX20_03449 0.60 -0.9 3,637,233 + MPMX20_03449 0.79 -1.5 3,637,241 - MPMX20_03449 0.80 -1.5 3,637,370 - +0.2 3,637,372 + -2.4 3,637,411 - +1.1 3,637,420 + -1.1 3,637,428 - +0.8 3,637,428 - +0.5 3,637,456 + -1.0 3,637,519 + +2.8 3,637,544 + MPMX20_03450 0.11 +0.6 3,637,596 + MPMX20_03450 0.16 +1.2 3,637,671 + MPMX20_03450 0.23 -0.0 3,637,679 - MPMX20_03450 0.24 -0.1 3,637,724 - MPMX20_03450 0.28 -1.3 3,637,772 + MPMX20_03450 0.32 -0.7 3,637,780 - MPMX20_03450 0.33 +1.3 3,637,843 + MPMX20_03450 0.39 +0.0 3,637,887 + MPMX20_03450 0.43 +0.1 3,637,895 - MPMX20_03450 0.43 +1.8 3,637,895 - MPMX20_03450 0.43 -0.9 3,637,895 - MPMX20_03450 0.43 -0.5 3,637,897 + MPMX20_03450 0.44 +0.1 3,637,936 + MPMX20_03450 0.47 -0.8 3,637,961 - MPMX20_03450 0.50 -1.4 3,637,982 + MPMX20_03450 0.51 -0.3 3,637,995 + MPMX20_03450 0.53 +0.2 3,638,003 + MPMX20_03450 0.53 -2.1 3,638,011 - MPMX20_03450 0.54 +0.9 3,638,011 - MPMX20_03450 0.54 +0.5 3,638,011 - MPMX20_03450 0.54 +2.1 3,638,011 - MPMX20_03450 0.54 +2.0 3,638,021 + MPMX20_03450 0.55 +3.3 3,638,029 - MPMX20_03450 0.56 +0.3 3,638,057 - MPMX20_03450 0.58 +0.5 3,638,057 - MPMX20_03450 0.58 +0.8 3,638,069 - MPMX20_03450 0.59 -0.3 3,638,090 + MPMX20_03450 0.61 +1.2 3,638,093 - MPMX20_03450 0.62 +0.1 3,638,093 - MPMX20_03450 0.62 -1.3 3,638,098 - MPMX20_03450 0.62 +0.1 3,638,104 - MPMX20_03450 0.63 +1.8 3,638,104 - MPMX20_03450 0.63 +1.7 3,638,311 + MPMX20_03450 0.82 -0.3
Or see this region's nucleotide sequence