Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03349 and MPMX20_03350 are separated by 56 nucleotides MPMX20_03350 and MPMX20_03351 are separated by 203 nucleotides MPMX20_03351 and MPMX20_03352 are separated by 86 nucleotides MPMX20_03352 and MPMX20_03353 are separated by 165 nucleotides
MPMX20_03349: MPMX20_03349 - cytosol aminopeptidase, at 3,522,300 to 3,523,721
_03349
MPMX20_03350: MPMX20_03350 - DnaA regulatory inactivator Hda, at 3,523,778 to 3,524,371
_03350
MPMX20_03351: MPMX20_03351 - Uracil permease, at 3,524,575 to 3,525,864
_03351
MPMX20_03352: MPMX20_03352 - Uracil phosphoribosyltransferase, at 3,525,951 to 3,526,577
_03352
MPMX20_03353: MPMX20_03353 - 6-phospho-beta-glucosidase BglA, at 3,526,743 to 3,528,173
_03353
Position (kb)
3524
3525
3526 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3523.616 kb on - strand at 3523.646 kb on - strand at 3523.722 kb on + strand at 3523.730 kb on - strand at 3523.740 kb on + strand at 3524.538 kb on + strand at 3524.543 kb on + strand at 3524.546 kb on - strand at 3524.663 kb on - strand at 3524.664 kb on - strand at 3524.713 kb on + strand, within MPMX20_03351 at 3524.721 kb on + strand, within MPMX20_03351 at 3524.729 kb on - strand, within MPMX20_03351 at 3524.866 kb on - strand, within MPMX20_03351 at 3524.866 kb on - strand, within MPMX20_03351 at 3524.917 kb on + strand, within MPMX20_03351 at 3524.922 kb on - strand, within MPMX20_03351 at 3525.023 kb on - strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.081 kb on - strand, within MPMX20_03351 at 3525.081 kb on - strand, within MPMX20_03351 at 3525.130 kb on - strand, within MPMX20_03351 at 3525.142 kb on - strand, within MPMX20_03351 at 3525.146 kb on + strand, within MPMX20_03351 at 3525.212 kb on - strand, within MPMX20_03351 at 3525.240 kb on - strand, within MPMX20_03351 at 3525.285 kb on - strand, within MPMX20_03351 at 3525.355 kb on - strand, within MPMX20_03351 at 3525.437 kb on - strand, within MPMX20_03351 at 3525.459 kb on + strand, within MPMX20_03351 at 3525.460 kb on + strand, within MPMX20_03351 at 3525.513 kb on + strand, within MPMX20_03351 at 3525.527 kb on + strand, within MPMX20_03351 at 3525.602 kb on - strand, within MPMX20_03351 at 3525.630 kb on - strand, within MPMX20_03351 at 3525.657 kb on - strand, within MPMX20_03351 at 3525.666 kb on - strand, within MPMX20_03351 at 3525.691 kb on + strand, within MPMX20_03351 at 3525.693 kb on + strand, within MPMX20_03351 at 3525.713 kb on + strand, within MPMX20_03351 at 3525.713 kb on + strand, within MPMX20_03351 at 3525.743 kb on + strand at 3525.831 kb on + strand at 3525.876 kb on - strand at 3525.878 kb on + strand at 3525.883 kb on + strand at 3525.997 kb on - strand at 3526.039 kb on + strand, within MPMX20_03352 at 3526.053 kb on + strand, within MPMX20_03352 at 3526.088 kb on - strand, within MPMX20_03352 at 3526.145 kb on + strand, within MPMX20_03352 at 3526.284 kb on - strand, within MPMX20_03352 at 3526.285 kb on + strand, within MPMX20_03352 at 3526.293 kb on - strand, within MPMX20_03352 at 3526.321 kb on + strand, within MPMX20_03352 at 3526.331 kb on + strand, within MPMX20_03352 at 3526.402 kb on - strand, within MPMX20_03352 at 3526.459 kb on - strand, within MPMX20_03352 at 3526.467 kb on + strand, within MPMX20_03352 at 3526.595 kb on - strand at 3526.712 kb on - strand at 3526.740 kb on + strand at 3526.740 kb on + strand at 3526.748 kb on - strand at 3526.758 kb on - strand at 3526.827 kb on - strand at 3526.848 kb on + strand at 3526.855 kb on - strand at 3526.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,523,616 - -0.1 3,523,646 - -1.0 3,523,722 + -1.8 3,523,730 - +1.9 3,523,740 + -2.7 3,524,538 + -1.2 3,524,543 + -2.8 3,524,546 - +0.9 3,524,663 - -0.2 3,524,664 - +1.6 3,524,713 + MPMX20_03351 0.11 -0.3 3,524,721 + MPMX20_03351 0.11 +0.9 3,524,729 - MPMX20_03351 0.12 +0.9 3,524,866 - MPMX20_03351 0.23 +0.5 3,524,866 - MPMX20_03351 0.23 -0.4 3,524,917 + MPMX20_03351 0.27 +0.2 3,524,922 - MPMX20_03351 0.27 +0.5 3,525,023 - MPMX20_03351 0.35 +2.2 3,525,073 + MPMX20_03351 0.39 +0.2 3,525,073 + MPMX20_03351 0.39 +2.2 3,525,073 + MPMX20_03351 0.39 -1.4 3,525,073 + MPMX20_03351 0.39 -2.1 3,525,073 + MPMX20_03351 0.39 +0.2 3,525,073 + MPMX20_03351 0.39 +2.0 3,525,081 - MPMX20_03351 0.39 +0.7 3,525,081 - MPMX20_03351 0.39 -0.6 3,525,130 - MPMX20_03351 0.43 +0.8 3,525,142 - MPMX20_03351 0.44 -0.7 3,525,146 + MPMX20_03351 0.44 +0.9 3,525,212 - MPMX20_03351 0.49 -0.7 3,525,240 - MPMX20_03351 0.52 -2.0 3,525,285 - MPMX20_03351 0.55 -1.3 3,525,355 - MPMX20_03351 0.60 -0.8 3,525,437 - MPMX20_03351 0.67 +1.3 3,525,459 + MPMX20_03351 0.69 +0.5 3,525,460 + MPMX20_03351 0.69 -1.0 3,525,513 + MPMX20_03351 0.73 +0.2 3,525,527 + MPMX20_03351 0.74 +0.1 3,525,602 - MPMX20_03351 0.80 +0.3 3,525,630 - MPMX20_03351 0.82 +0.1 3,525,657 - MPMX20_03351 0.84 +1.1 3,525,666 - MPMX20_03351 0.85 +0.1 3,525,691 + MPMX20_03351 0.87 -0.6 3,525,693 + MPMX20_03351 0.87 -0.8 3,525,713 + MPMX20_03351 0.88 -1.6 3,525,713 + MPMX20_03351 0.88 -0.7 3,525,743 + -1.0 3,525,831 + -0.3 3,525,876 - +1.3 3,525,878 + +0.1 3,525,883 + +1.8 3,525,997 - -0.5 3,526,039 + MPMX20_03352 0.14 +0.5 3,526,053 + MPMX20_03352 0.16 +0.5 3,526,088 - MPMX20_03352 0.22 +1.3 3,526,145 + MPMX20_03352 0.31 -1.1 3,526,284 - MPMX20_03352 0.53 -1.2 3,526,285 + MPMX20_03352 0.53 +0.3 3,526,293 - MPMX20_03352 0.55 -0.3 3,526,321 + MPMX20_03352 0.59 -2.0 3,526,331 + MPMX20_03352 0.61 +0.3 3,526,402 - MPMX20_03352 0.72 -1.6 3,526,459 - MPMX20_03352 0.81 +0.2 3,526,467 + MPMX20_03352 0.82 -2.6 3,526,595 - +0.4 3,526,712 - +2.5 3,526,740 + -1.7 3,526,740 + +1.3 3,526,748 - -2.2 3,526,758 - +0.2 3,526,827 - -4.0 3,526,848 + +1.3 3,526,855 - -1.4 3,526,862 - -1.0
Or see this region's nucleotide sequence