Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03349 and MPMX20_03350 are separated by 56 nucleotides MPMX20_03350 and MPMX20_03351 are separated by 203 nucleotides
MPMX20_03349: MPMX20_03349 - cytosol aminopeptidase, at 3,522,300 to 3,523,721
_03349
MPMX20_03350: MPMX20_03350 - DnaA regulatory inactivator Hda, at 3,523,778 to 3,524,371
_03350
MPMX20_03351: MPMX20_03351 - Uracil permease, at 3,524,575 to 3,525,864
_03351
Position (kb)
3523
3524
3525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3522.849 kb on - strand, within MPMX20_03349 at 3522.880 kb on - strand, within MPMX20_03349 at 3522.911 kb on + strand, within MPMX20_03349 at 3522.911 kb on + strand, within MPMX20_03349 at 3522.921 kb on - strand, within MPMX20_03349 at 3522.950 kb on - strand, within MPMX20_03349 at 3522.977 kb on + strand, within MPMX20_03349 at 3522.983 kb on + strand, within MPMX20_03349 at 3523.023 kb on + strand, within MPMX20_03349 at 3523.023 kb on + strand, within MPMX20_03349 at 3523.055 kb on + strand, within MPMX20_03349 at 3523.068 kb on + strand, within MPMX20_03349 at 3523.076 kb on - strand, within MPMX20_03349 at 3523.084 kb on + strand, within MPMX20_03349 at 3523.117 kb on + strand, within MPMX20_03349 at 3523.127 kb on + strand, within MPMX20_03349 at 3523.219 kb on - strand, within MPMX20_03349 at 3523.219 kb on - strand, within MPMX20_03349 at 3523.311 kb on + strand, within MPMX20_03349 at 3523.377 kb on + strand, within MPMX20_03349 at 3523.466 kb on + strand, within MPMX20_03349 at 3523.466 kb on + strand, within MPMX20_03349 at 3523.467 kb on - strand, within MPMX20_03349 at 3523.467 kb on - strand, within MPMX20_03349 at 3523.467 kb on - strand, within MPMX20_03349 at 3523.474 kb on - strand, within MPMX20_03349 at 3523.519 kb on + strand, within MPMX20_03349 at 3523.527 kb on - strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.537 kb on - strand, within MPMX20_03349 at 3523.616 kb on - strand at 3523.646 kb on - strand at 3523.722 kb on + strand at 3523.730 kb on - strand at 3523.740 kb on + strand at 3524.538 kb on + strand at 3524.543 kb on + strand at 3524.546 kb on - strand at 3524.663 kb on - strand at 3524.664 kb on - strand at 3524.713 kb on + strand, within MPMX20_03351 at 3524.721 kb on + strand, within MPMX20_03351 at 3524.729 kb on - strand, within MPMX20_03351 at 3524.866 kb on - strand, within MPMX20_03351 at 3524.866 kb on - strand, within MPMX20_03351 at 3524.917 kb on + strand, within MPMX20_03351 at 3524.922 kb on - strand, within MPMX20_03351 at 3525.023 kb on - strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.081 kb on - strand, within MPMX20_03351 at 3525.081 kb on - strand, within MPMX20_03351 at 3525.130 kb on - strand, within MPMX20_03351 at 3525.142 kb on - strand, within MPMX20_03351 at 3525.146 kb on + strand, within MPMX20_03351 at 3525.212 kb on - strand, within MPMX20_03351 at 3525.240 kb on - strand, within MPMX20_03351 at 3525.285 kb on - strand, within MPMX20_03351 at 3525.355 kb on - strand, within MPMX20_03351
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,522,849 - MPMX20_03349 0.39 -0.8 3,522,880 - MPMX20_03349 0.41 +2.5 3,522,911 + MPMX20_03349 0.43 -0.1 3,522,911 + MPMX20_03349 0.43 +1.9 3,522,921 - MPMX20_03349 0.44 +2.1 3,522,950 - MPMX20_03349 0.46 -0.1 3,522,977 + MPMX20_03349 0.48 -3.5 3,522,983 + MPMX20_03349 0.48 -1.6 3,523,023 + MPMX20_03349 0.51 -0.7 3,523,023 + MPMX20_03349 0.51 +1.8 3,523,055 + MPMX20_03349 0.53 -1.5 3,523,068 + MPMX20_03349 0.54 -0.1 3,523,076 - MPMX20_03349 0.55 +0.1 3,523,084 + MPMX20_03349 0.55 -2.6 3,523,117 + MPMX20_03349 0.57 +0.3 3,523,127 + MPMX20_03349 0.58 -0.5 3,523,219 - MPMX20_03349 0.65 +1.3 3,523,219 - MPMX20_03349 0.65 +0.1 3,523,311 + MPMX20_03349 0.71 +0.9 3,523,377 + MPMX20_03349 0.76 +0.5 3,523,466 + MPMX20_03349 0.82 -1.2 3,523,466 + MPMX20_03349 0.82 +3.5 3,523,467 - MPMX20_03349 0.82 -1.0 3,523,467 - MPMX20_03349 0.82 +0.9 3,523,467 - MPMX20_03349 0.82 +0.1 3,523,474 - MPMX20_03349 0.83 -0.5 3,523,519 + MPMX20_03349 0.86 -1.1 3,523,527 - MPMX20_03349 0.86 +0.1 3,523,529 + MPMX20_03349 0.86 -2.4 3,523,529 + MPMX20_03349 0.86 +0.0 3,523,529 + MPMX20_03349 0.86 +1.6 3,523,529 + MPMX20_03349 0.86 -0.5 3,523,537 - MPMX20_03349 0.87 -0.5 3,523,616 - -0.1 3,523,646 - -1.0 3,523,722 + -1.8 3,523,730 - +1.9 3,523,740 + -2.7 3,524,538 + -1.2 3,524,543 + -2.8 3,524,546 - +0.9 3,524,663 - -0.2 3,524,664 - +1.6 3,524,713 + MPMX20_03351 0.11 -0.3 3,524,721 + MPMX20_03351 0.11 +0.9 3,524,729 - MPMX20_03351 0.12 +0.9 3,524,866 - MPMX20_03351 0.23 +0.5 3,524,866 - MPMX20_03351 0.23 -0.4 3,524,917 + MPMX20_03351 0.27 +0.2 3,524,922 - MPMX20_03351 0.27 +0.5 3,525,023 - MPMX20_03351 0.35 +2.2 3,525,073 + MPMX20_03351 0.39 +0.2 3,525,073 + MPMX20_03351 0.39 +2.2 3,525,073 + MPMX20_03351 0.39 -1.4 3,525,073 + MPMX20_03351 0.39 -2.1 3,525,073 + MPMX20_03351 0.39 +0.2 3,525,073 + MPMX20_03351 0.39 +2.0 3,525,081 - MPMX20_03351 0.39 +0.7 3,525,081 - MPMX20_03351 0.39 -0.6 3,525,130 - MPMX20_03351 0.43 +0.8 3,525,142 - MPMX20_03351 0.44 -0.7 3,525,146 + MPMX20_03351 0.44 +0.9 3,525,212 - MPMX20_03351 0.49 -0.7 3,525,240 - MPMX20_03351 0.52 -2.0 3,525,285 - MPMX20_03351 0.55 -1.3 3,525,355 - MPMX20_03351 0.60 -0.8
Or see this region's nucleotide sequence