Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03216 and MPMX20_03217 are separated by 89 nucleotides MPMX20_03217 and MPMX20_03218 are separated by 15 nucleotides MPMX20_03218 and MPMX20_03219 are separated by 630 nucleotides
MPMX20_03216: MPMX20_03216 - NADH-quinone oxidoreductase subunit C/D, at 3,387,011 to 3,388,813
_03216
MPMX20_03217: MPMX20_03217 - NADH-quinone oxidoreductase subunit B, at 3,388,903 to 3,389,577
_03217
MPMX20_03218: MPMX20_03218 - NAD(P)H-quinone oxidoreductase subunit 3, at 3,389,593 to 3,390,033
_03218
MPMX20_03219: MPMX20_03219 - HTH-type transcriptional regulator HdfR, at 3,390,664 to 3,391,578
_03219
Position (kb)
3389
3390
3391 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3388.661 kb on - strand at 3388.664 kb on + strand at 3388.719 kb on + strand at 3388.751 kb on - strand at 3388.797 kb on + strand at 3388.876 kb on + strand at 3388.876 kb on + strand at 3388.876 kb on + strand at 3388.881 kb on + strand at 3388.884 kb on - strand at 3388.916 kb on + strand at 3389.007 kb on + strand, within MPMX20_03217 at 3389.007 kb on + strand, within MPMX20_03217 at 3389.009 kb on + strand, within MPMX20_03217 at 3389.017 kb on - strand, within MPMX20_03217 at 3389.017 kb on - strand, within MPMX20_03217 at 3389.109 kb on - strand, within MPMX20_03217 at 3389.137 kb on + strand, within MPMX20_03217 at 3389.147 kb on + strand, within MPMX20_03217 at 3389.165 kb on + strand, within MPMX20_03217 at 3389.286 kb on - strand, within MPMX20_03217 at 3389.308 kb on + strand, within MPMX20_03217 at 3389.316 kb on - strand, within MPMX20_03217 at 3389.481 kb on - strand, within MPMX20_03217 at 3389.509 kb on - strand, within MPMX20_03217 at 3389.525 kb on + strand at 3389.553 kb on - strand at 3389.553 kb on - strand at 3389.678 kb on - strand, within MPMX20_03218 at 3389.692 kb on - strand, within MPMX20_03218 at 3389.692 kb on - strand, within MPMX20_03218 at 3389.861 kb on - strand, within MPMX20_03218 at 3389.897 kb on - strand, within MPMX20_03218 at 3389.897 kb on - strand, within MPMX20_03218 at 3389.953 kb on + strand, within MPMX20_03218 at 3389.953 kb on + strand, within MPMX20_03218 at 3389.956 kb on - strand, within MPMX20_03218 at 3389.995 kb on + strand at 3390.009 kb on + strand at 3390.009 kb on + strand at 3390.029 kb on + strand at 3390.057 kb on - strand at 3390.067 kb on + strand at 3390.125 kb on - strand at 3390.258 kb on + strand at 3390.258 kb on + strand at 3390.264 kb on + strand at 3390.265 kb on - strand at 3390.273 kb on + strand at 3390.273 kb on + strand at 3390.459 kb on + strand at 3390.459 kb on + strand at 3390.466 kb on - strand at 3390.467 kb on - strand at 3390.470 kb on + strand at 3390.470 kb on + strand at 3390.478 kb on - strand at 3390.657 kb on - strand at 3390.667 kb on - strand at 3390.742 kb on - strand at 3390.808 kb on + strand, within MPMX20_03219 at 3390.816 kb on - strand, within MPMX20_03219 at 3390.831 kb on - strand, within MPMX20_03219 at 3390.837 kb on + strand, within MPMX20_03219 at 3390.845 kb on + strand, within MPMX20_03219 at 3390.845 kb on + strand, within MPMX20_03219 at 3390.845 kb on + strand, within MPMX20_03219 at 3390.853 kb on - strand, within MPMX20_03219 at 3390.853 kb on - strand, within MPMX20_03219 at 3390.853 kb on - strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.872 kb on - strand, within MPMX20_03219 at 3390.872 kb on - strand, within MPMX20_03219 at 3390.872 kb on - strand, within MPMX20_03219 at 3390.888 kb on + strand, within MPMX20_03219 at 3390.888 kb on + strand, within MPMX20_03219 at 3390.896 kb on - strand, within MPMX20_03219 at 3390.900 kb on + strand, within MPMX20_03219 at 3390.900 kb on + strand, within MPMX20_03219 at 3390.902 kb on - strand, within MPMX20_03219 at 3390.906 kb on + strand, within MPMX20_03219 at 3390.908 kb on - strand, within MPMX20_03219 at 3390.908 kb on - strand, within MPMX20_03219 at 3390.911 kb on + strand, within MPMX20_03219 at 3390.918 kb on + strand, within MPMX20_03219 at 3390.941 kb on + strand, within MPMX20_03219 at 3390.956 kb on + strand, within MPMX20_03219 at 3390.958 kb on - strand, within MPMX20_03219 at 3390.971 kb on + strand, within MPMX20_03219 at 3390.971 kb on + strand, within MPMX20_03219 at 3390.996 kb on + strand, within MPMX20_03219 at 3390.996 kb on + strand, within MPMX20_03219 at 3390.997 kb on + strand, within MPMX20_03219 at 3390.999 kb on + strand, within MPMX20_03219 at 3391.022 kb on + strand, within MPMX20_03219
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,388,661 - -1.9 3,388,664 + -0.1 3,388,719 + -0.4 3,388,751 - +0.9 3,388,797 + -0.9 3,388,876 + -0.4 3,388,876 + -2.2 3,388,876 + -1.4 3,388,881 + -0.8 3,388,884 - -0.0 3,388,916 + +0.6 3,389,007 + MPMX20_03217 0.15 -0.8 3,389,007 + MPMX20_03217 0.15 -1.3 3,389,009 + MPMX20_03217 0.16 -0.9 3,389,017 - MPMX20_03217 0.17 -1.8 3,389,017 - MPMX20_03217 0.17 -0.4 3,389,109 - MPMX20_03217 0.31 +0.9 3,389,137 + MPMX20_03217 0.35 -2.0 3,389,147 + MPMX20_03217 0.36 +1.3 3,389,165 + MPMX20_03217 0.39 -0.3 3,389,286 - MPMX20_03217 0.57 -0.1 3,389,308 + MPMX20_03217 0.60 +0.3 3,389,316 - MPMX20_03217 0.61 -1.0 3,389,481 - MPMX20_03217 0.86 -0.9 3,389,509 - MPMX20_03217 0.90 +0.1 3,389,525 + -2.3 3,389,553 - -0.1 3,389,553 - +0.3 3,389,678 - MPMX20_03218 0.19 +0.9 3,389,692 - MPMX20_03218 0.22 +2.9 3,389,692 - MPMX20_03218 0.22 -0.4 3,389,861 - MPMX20_03218 0.61 +0.6 3,389,897 - MPMX20_03218 0.69 -1.0 3,389,897 - MPMX20_03218 0.69 -0.1 3,389,953 + MPMX20_03218 0.82 +0.3 3,389,953 + MPMX20_03218 0.82 -0.9 3,389,956 - MPMX20_03218 0.82 -1.9 3,389,995 + +0.9 3,390,009 + +0.3 3,390,009 + +1.3 3,390,029 + +0.1 3,390,057 - +2.9 3,390,067 + +0.9 3,390,125 - +0.7 3,390,258 + -2.3 3,390,258 + -1.8 3,390,264 + -1.9 3,390,265 - -1.5 3,390,273 + -1.4 3,390,273 + +1.1 3,390,459 + -0.7 3,390,459 + -0.2 3,390,466 - -1.2 3,390,467 - -2.4 3,390,470 + +0.2 3,390,470 + +0.5 3,390,478 - +0.6 3,390,657 - +1.3 3,390,667 - -2.9 3,390,742 - -3.3 3,390,808 + MPMX20_03219 0.16 -1.1 3,390,816 - MPMX20_03219 0.17 -0.7 3,390,831 - MPMX20_03219 0.18 -2.0 3,390,837 + MPMX20_03219 0.19 -3.1 3,390,845 + MPMX20_03219 0.20 -1.1 3,390,845 + MPMX20_03219 0.20 -1.7 3,390,845 + MPMX20_03219 0.20 +0.6 3,390,853 - MPMX20_03219 0.21 -2.9 3,390,853 - MPMX20_03219 0.21 -0.7 3,390,853 - MPMX20_03219 0.21 +1.5 3,390,864 + MPMX20_03219 0.22 -1.1 3,390,864 + MPMX20_03219 0.22 -0.5 3,390,864 + MPMX20_03219 0.22 -0.3 3,390,864 + MPMX20_03219 0.22 -0.0 3,390,864 + MPMX20_03219 0.22 -0.1 3,390,864 + MPMX20_03219 0.22 -2.8 3,390,864 + MPMX20_03219 0.22 -0.0 3,390,864 + MPMX20_03219 0.22 -1.9 3,390,872 - MPMX20_03219 0.23 -0.5 3,390,872 - MPMX20_03219 0.23 +0.3 3,390,872 - MPMX20_03219 0.23 +1.3 3,390,888 + MPMX20_03219 0.24 -1.7 3,390,888 + MPMX20_03219 0.24 -1.2 3,390,896 - MPMX20_03219 0.25 -1.9 3,390,900 + MPMX20_03219 0.26 +1.3 3,390,900 + MPMX20_03219 0.26 +3.9 3,390,902 - MPMX20_03219 0.26 -0.7 3,390,906 + MPMX20_03219 0.26 +0.6 3,390,908 - MPMX20_03219 0.27 +0.3 3,390,908 - MPMX20_03219 0.27 +1.9 3,390,911 + MPMX20_03219 0.27 +0.9 3,390,918 + MPMX20_03219 0.28 +0.5 3,390,941 + MPMX20_03219 0.30 -1.3 3,390,956 + MPMX20_03219 0.32 -3.0 3,390,958 - MPMX20_03219 0.32 -3.0 3,390,971 + MPMX20_03219 0.34 +2.3 3,390,971 + MPMX20_03219 0.34 -0.1 3,390,996 + MPMX20_03219 0.36 -0.3 3,390,996 + MPMX20_03219 0.36 -0.6 3,390,997 + MPMX20_03219 0.36 +0.3 3,390,999 + MPMX20_03219 0.37 -1.0 3,391,022 + MPMX20_03219 0.39 +1.5
Or see this region's nucleotide sequence