Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03213 and MPMX20_03214 are separated by 53 nucleotides MPMX20_03214 and MPMX20_03215 overlap by 4 nucleotides MPMX20_03215 and MPMX20_03216 are separated by 2 nucleotides
MPMX20_03213: MPMX20_03213 - NADH-quinone oxidoreductase subunit G, at 3,382,394 to 3,385,120
_03213
MPMX20_03214: MPMX20_03214 - NADH-quinone oxidoreductase subunit F, at 3,385,174 to 3,386,511
_03214
MPMX20_03215: MPMX20_03215 - NADH-quinone oxidoreductase subunit E, at 3,386,508 to 3,387,008
_03215
MPMX20_03216: MPMX20_03216 - NADH-quinone oxidoreductase subunit C/D, at 3,387,011 to 3,388,813
_03216
Position (kb)
3385
3386
3387 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3384.245 kb on - strand, within MPMX20_03213 at 3384.347 kb on - strand, within MPMX20_03213 at 3384.403 kb on - strand, within MPMX20_03213 at 3384.408 kb on - strand, within MPMX20_03213 at 3384.587 kb on - strand, within MPMX20_03213 at 3384.768 kb on + strand, within MPMX20_03213 at 3384.847 kb on - strand, within MPMX20_03213 at 3384.913 kb on + strand at 3384.931 kb on - strand at 3384.996 kb on + strand at 3384.996 kb on + strand at 3384.999 kb on - strand at 3385.001 kb on + strand at 3385.077 kb on + strand at 3385.091 kb on - strand at 3385.138 kb on + strand at 3385.143 kb on + strand at 3385.301 kb on - strand at 3385.349 kb on - strand, within MPMX20_03214 at 3385.421 kb on + strand, within MPMX20_03214 at 3385.429 kb on - strand, within MPMX20_03214 at 3385.446 kb on + strand, within MPMX20_03214 at 3385.446 kb on + strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.593 kb on + strand, within MPMX20_03214 at 3385.848 kb on + strand, within MPMX20_03214 at 3385.857 kb on - strand, within MPMX20_03214 at 3385.895 kb on - strand, within MPMX20_03214 at 3385.923 kb on + strand, within MPMX20_03214 at 3385.946 kb on + strand, within MPMX20_03214 at 3385.954 kb on - strand, within MPMX20_03214 at 3385.973 kb on - strand, within MPMX20_03214 at 3385.973 kb on - strand, within MPMX20_03214 at 3385.988 kb on + strand, within MPMX20_03214 at 3385.988 kb on + strand, within MPMX20_03214 at 3385.996 kb on - strand, within MPMX20_03214 at 3386.005 kb on - strand, within MPMX20_03214 at 3386.104 kb on - strand, within MPMX20_03214 at 3386.131 kb on - strand, within MPMX20_03214 at 3386.211 kb on + strand, within MPMX20_03214 at 3386.219 kb on - strand, within MPMX20_03214 at 3386.240 kb on + strand, within MPMX20_03214 at 3386.240 kb on + strand, within MPMX20_03214 at 3386.240 kb on + strand, within MPMX20_03214 at 3386.248 kb on - strand, within MPMX20_03214 at 3386.248 kb on - strand, within MPMX20_03214 at 3386.352 kb on - strand, within MPMX20_03214 at 3386.390 kb on + strand at 3386.463 kb on + strand at 3386.463 kb on + strand at 3386.465 kb on + strand at 3386.473 kb on - strand at 3386.483 kb on - strand at 3386.533 kb on + strand at 3386.536 kb on - strand at 3386.536 kb on - strand at 3386.625 kb on - strand, within MPMX20_03215 at 3386.647 kb on - strand, within MPMX20_03215 at 3386.654 kb on + strand, within MPMX20_03215 at 3386.654 kb on + strand, within MPMX20_03215 at 3386.662 kb on - strand, within MPMX20_03215 at 3386.723 kb on - strand, within MPMX20_03215 at 3386.755 kb on - strand, within MPMX20_03215 at 3386.789 kb on + strand, within MPMX20_03215 at 3387.050 kb on - strand at 3387.119 kb on + strand at 3387.144 kb on - strand at 3387.172 kb on + strand at 3387.180 kb on - strand at 3387.283 kb on + strand, within MPMX20_03216 at 3387.291 kb on - strand, within MPMX20_03216 at 3387.330 kb on + strand, within MPMX20_03216 at 3387.365 kb on + strand, within MPMX20_03216 at 3387.365 kb on + strand, within MPMX20_03216 at 3387.367 kb on + strand, within MPMX20_03216 at 3387.367 kb on + strand, within MPMX20_03216 at 3387.367 kb on + strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.480 kb on + strand, within MPMX20_03216
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,384,245 - MPMX20_03213 0.68 -1.1 3,384,347 - MPMX20_03213 0.72 -0.1 3,384,403 - MPMX20_03213 0.74 -0.8 3,384,408 - MPMX20_03213 0.74 -1.3 3,384,587 - MPMX20_03213 0.80 -0.6 3,384,768 + MPMX20_03213 0.87 +0.4 3,384,847 - MPMX20_03213 0.90 -0.4 3,384,913 + -0.4 3,384,931 - +0.6 3,384,996 + +0.3 3,384,996 + -1.8 3,384,999 - +0.9 3,385,001 + -1.7 3,385,077 + -1.7 3,385,091 - +0.1 3,385,138 + -1.7 3,385,143 + -1.8 3,385,301 - -3.0 3,385,349 - MPMX20_03214 0.13 -2.4 3,385,421 + MPMX20_03214 0.18 -0.3 3,385,429 - MPMX20_03214 0.19 -2.0 3,385,446 + MPMX20_03214 0.20 -0.1 3,385,446 + MPMX20_03214 0.20 +0.9 3,385,454 - MPMX20_03214 0.21 +1.9 3,385,454 - MPMX20_03214 0.21 -1.7 3,385,454 - MPMX20_03214 0.21 -2.6 3,385,454 - MPMX20_03214 0.21 -0.4 3,385,454 - MPMX20_03214 0.21 -0.8 3,385,454 - MPMX20_03214 0.21 -0.7 3,385,593 + MPMX20_03214 0.31 +1.3 3,385,848 + MPMX20_03214 0.50 +0.6 3,385,857 - MPMX20_03214 0.51 -0.9 3,385,895 - MPMX20_03214 0.54 -0.3 3,385,923 + MPMX20_03214 0.56 -0.3 3,385,946 + MPMX20_03214 0.58 -1.0 3,385,954 - MPMX20_03214 0.58 -0.9 3,385,973 - MPMX20_03214 0.60 -1.3 3,385,973 - MPMX20_03214 0.60 +1.3 3,385,988 + MPMX20_03214 0.61 -0.8 3,385,988 + MPMX20_03214 0.61 +0.6 3,385,996 - MPMX20_03214 0.61 -1.3 3,386,005 - MPMX20_03214 0.62 -0.9 3,386,104 - MPMX20_03214 0.70 -0.8 3,386,131 - MPMX20_03214 0.72 +0.2 3,386,211 + MPMX20_03214 0.78 -2.5 3,386,219 - MPMX20_03214 0.78 -0.4 3,386,240 + MPMX20_03214 0.80 +1.3 3,386,240 + MPMX20_03214 0.80 -1.3 3,386,240 + MPMX20_03214 0.80 +0.9 3,386,248 - MPMX20_03214 0.80 -0.1 3,386,248 - MPMX20_03214 0.80 +0.3 3,386,352 - MPMX20_03214 0.88 -0.5 3,386,390 + -1.1 3,386,463 + +0.1 3,386,463 + -1.5 3,386,465 + -0.1 3,386,473 - -1.4 3,386,483 - +0.6 3,386,533 + -0.3 3,386,536 - -0.7 3,386,536 - -0.3 3,386,625 - MPMX20_03215 0.23 -0.4 3,386,647 - MPMX20_03215 0.28 -0.3 3,386,654 + MPMX20_03215 0.29 -1.4 3,386,654 + MPMX20_03215 0.29 -0.4 3,386,662 - MPMX20_03215 0.31 -0.7 3,386,723 - MPMX20_03215 0.43 +0.1 3,386,755 - MPMX20_03215 0.49 +1.3 3,386,789 + MPMX20_03215 0.56 +2.9 3,387,050 - -0.8 3,387,119 + -1.9 3,387,144 - -1.3 3,387,172 + -0.4 3,387,180 - -1.2 3,387,283 + MPMX20_03216 0.15 -0.7 3,387,291 - MPMX20_03216 0.16 -1.3 3,387,330 + MPMX20_03216 0.18 +0.6 3,387,365 + MPMX20_03216 0.20 -1.0 3,387,365 + MPMX20_03216 0.20 -0.9 3,387,367 + MPMX20_03216 0.20 -2.4 3,387,367 + MPMX20_03216 0.20 -0.1 3,387,367 + MPMX20_03216 0.20 -1.5 3,387,375 - MPMX20_03216 0.20 +1.1 3,387,375 - MPMX20_03216 0.20 +0.1 3,387,375 - MPMX20_03216 0.20 -1.3 3,387,375 - MPMX20_03216 0.20 -0.1 3,387,480 + MPMX20_03216 0.26 -1.6
Or see this region's nucleotide sequence