Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03211 and MPMX20_03212 are separated by 13 nucleotides MPMX20_03212 and MPMX20_03213 overlap by 4 nucleotides MPMX20_03213 and MPMX20_03214 are separated by 53 nucleotides
MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406
_03211
MPMX20_03212: MPMX20_03212 - NADH-quinone oxidoreductase subunit H, at 3,381,420 to 3,382,397
_03212
MPMX20_03213: MPMX20_03213 - NADH-quinone oxidoreductase subunit G, at 3,382,394 to 3,385,120
_03213
MPMX20_03214: MPMX20_03214 - NADH-quinone oxidoreductase subunit F, at 3,385,174 to 3,386,511
_03214
Position (kb)
3382
3383
3384
3385
3386 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3381.410 kb on + strand at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.606 kb on + strand, within MPMX20_03212 at 3381.633 kb on - strand, within MPMX20_03212 at 3381.690 kb on - strand, within MPMX20_03212 at 3381.772 kb on + strand, within MPMX20_03212 at 3381.775 kb on - strand, within MPMX20_03212 at 3381.782 kb on + strand, within MPMX20_03212 at 3381.972 kb on - strand, within MPMX20_03212 at 3382.059 kb on + strand, within MPMX20_03212 at 3382.067 kb on - strand, within MPMX20_03212 at 3382.177 kb on + strand, within MPMX20_03212 at 3382.228 kb on - strand, within MPMX20_03212 at 3382.242 kb on - strand, within MPMX20_03212 at 3382.317 kb on + strand at 3382.455 kb on + strand at 3382.483 kb on - strand at 3382.560 kb on + strand at 3382.602 kb on + strand at 3382.641 kb on + strand at 3382.679 kb on - strand, within MPMX20_03213 at 3382.736 kb on - strand, within MPMX20_03213 at 3382.763 kb on + strand, within MPMX20_03213 at 3382.810 kb on - strand, within MPMX20_03213 at 3382.841 kb on + strand, within MPMX20_03213 at 3382.849 kb on - strand, within MPMX20_03213 at 3382.890 kb on - strand, within MPMX20_03213 at 3382.901 kb on - strand, within MPMX20_03213 at 3382.937 kb on - strand, within MPMX20_03213 at 3382.967 kb on - strand, within MPMX20_03213 at 3383.000 kb on - strand, within MPMX20_03213 at 3383.131 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.139 kb on - strand, within MPMX20_03213 at 3383.146 kb on - strand, within MPMX20_03213 at 3383.146 kb on - strand, within MPMX20_03213 at 3383.156 kb on - strand, within MPMX20_03213 at 3383.158 kb on - strand, within MPMX20_03213 at 3383.162 kb on + strand, within MPMX20_03213 at 3383.195 kb on + strand, within MPMX20_03213 at 3383.255 kb on + strand, within MPMX20_03213 at 3383.359 kb on + strand, within MPMX20_03213 at 3383.361 kb on + strand, within MPMX20_03213 at 3383.369 kb on - strand, within MPMX20_03213 at 3383.374 kb on - strand, within MPMX20_03213 at 3383.484 kb on + strand, within MPMX20_03213 at 3383.500 kb on + strand, within MPMX20_03213 at 3383.583 kb on - strand, within MPMX20_03213 at 3383.649 kb on + strand, within MPMX20_03213 at 3383.693 kb on + strand, within MPMX20_03213 at 3383.718 kb on + strand, within MPMX20_03213 at 3383.756 kb on + strand, within MPMX20_03213 at 3383.756 kb on + strand, within MPMX20_03213 at 3383.945 kb on + strand, within MPMX20_03213 at 3384.025 kb on + strand, within MPMX20_03213 at 3384.033 kb on - strand, within MPMX20_03213 at 3384.033 kb on - strand, within MPMX20_03213 at 3384.033 kb on - strand, within MPMX20_03213 at 3384.033 kb on - strand, within MPMX20_03213 at 3384.102 kb on - strand, within MPMX20_03213 at 3384.245 kb on - strand, within MPMX20_03213 at 3384.347 kb on - strand, within MPMX20_03213 at 3384.403 kb on - strand, within MPMX20_03213 at 3384.408 kb on - strand, within MPMX20_03213 at 3384.587 kb on - strand, within MPMX20_03213 at 3384.768 kb on + strand, within MPMX20_03213 at 3384.847 kb on - strand, within MPMX20_03213 at 3384.913 kb on + strand at 3384.931 kb on - strand at 3384.996 kb on + strand at 3384.996 kb on + strand at 3384.999 kb on - strand at 3385.001 kb on + strand at 3385.077 kb on + strand at 3385.091 kb on - strand at 3385.138 kb on + strand at 3385.143 kb on + strand at 3385.301 kb on - strand at 3385.349 kb on - strand, within MPMX20_03214 at 3385.421 kb on + strand, within MPMX20_03214 at 3385.429 kb on - strand, within MPMX20_03214 at 3385.446 kb on + strand, within MPMX20_03214 at 3385.446 kb on + strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.593 kb on + strand, within MPMX20_03214 at 3385.848 kb on + strand, within MPMX20_03214 at 3385.857 kb on - strand, within MPMX20_03214 at 3385.895 kb on - strand, within MPMX20_03214 at 3385.923 kb on + strand, within MPMX20_03214 at 3385.946 kb on + strand, within MPMX20_03214 at 3385.954 kb on - strand, within MPMX20_03214 at 3385.973 kb on - strand, within MPMX20_03214 at 3385.973 kb on - strand, within MPMX20_03214 at 3385.988 kb on + strand, within MPMX20_03214 at 3385.988 kb on + strand, within MPMX20_03214 at 3385.996 kb on - strand, within MPMX20_03214 at 3386.005 kb on - strand, within MPMX20_03214 at 3386.104 kb on - strand, within MPMX20_03214
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,381,410 + -1.0 3,381,528 + MPMX20_03212 0.11 +2.9 3,381,528 + MPMX20_03212 0.11 +0.1 3,381,528 + MPMX20_03212 0.11 -1.6 3,381,536 - MPMX20_03212 0.12 -1.1 3,381,536 - MPMX20_03212 0.12 +0.1 3,381,536 - MPMX20_03212 0.12 +0.9 3,381,536 - MPMX20_03212 0.12 +1.3 3,381,606 + MPMX20_03212 0.19 +1.5 3,381,633 - MPMX20_03212 0.22 -1.0 3,381,690 - MPMX20_03212 0.28 -1.1 3,381,772 + MPMX20_03212 0.36 -1.3 3,381,775 - MPMX20_03212 0.36 -2.0 3,381,782 + MPMX20_03212 0.37 -0.6 3,381,972 - MPMX20_03212 0.56 -0.4 3,382,059 + MPMX20_03212 0.65 +0.6 3,382,067 - MPMX20_03212 0.66 -0.8 3,382,177 + MPMX20_03212 0.77 -2.3 3,382,228 - MPMX20_03212 0.83 -1.7 3,382,242 - MPMX20_03212 0.84 -1.5 3,382,317 + +0.9 3,382,455 + -1.6 3,382,483 - +0.1 3,382,560 + -1.8 3,382,602 + +0.1 3,382,641 + -2.3 3,382,679 - MPMX20_03213 0.10 +0.6 3,382,736 - MPMX20_03213 0.13 -1.9 3,382,763 + MPMX20_03213 0.14 -0.1 3,382,810 - MPMX20_03213 0.15 +0.8 3,382,841 + MPMX20_03213 0.16 -1.5 3,382,849 - MPMX20_03213 0.17 +1.1 3,382,890 - MPMX20_03213 0.18 +0.1 3,382,901 - MPMX20_03213 0.19 -1.1 3,382,937 - MPMX20_03213 0.20 -1.0 3,382,967 - MPMX20_03213 0.21 +0.1 3,383,000 - MPMX20_03213 0.22 +1.3 3,383,131 + MPMX20_03213 0.27 -1.6 3,383,138 + MPMX20_03213 0.27 -0.1 3,383,138 + MPMX20_03213 0.27 +0.8 3,383,138 + MPMX20_03213 0.27 +0.3 3,383,139 - MPMX20_03213 0.27 -0.4 3,383,146 - MPMX20_03213 0.28 -1.1 3,383,146 - MPMX20_03213 0.28 -2.2 3,383,156 - MPMX20_03213 0.28 +1.3 3,383,158 - MPMX20_03213 0.28 -0.9 3,383,162 + MPMX20_03213 0.28 -0.4 3,383,195 + MPMX20_03213 0.29 -0.3 3,383,255 + MPMX20_03213 0.32 -1.3 3,383,359 + MPMX20_03213 0.35 -0.3 3,383,361 + MPMX20_03213 0.35 -0.6 3,383,369 - MPMX20_03213 0.36 +0.9 3,383,374 - MPMX20_03213 0.36 -2.0 3,383,484 + MPMX20_03213 0.40 -0.1 3,383,500 + MPMX20_03213 0.41 -1.8 3,383,583 - MPMX20_03213 0.44 +0.1 3,383,649 + MPMX20_03213 0.46 +0.6 3,383,693 + MPMX20_03213 0.48 +0.3 3,383,718 + MPMX20_03213 0.49 +0.6 3,383,756 + MPMX20_03213 0.50 -2.4 3,383,756 + MPMX20_03213 0.50 -0.6 3,383,945 + MPMX20_03213 0.57 +1.9 3,384,025 + MPMX20_03213 0.60 +0.3 3,384,033 - MPMX20_03213 0.60 -2.3 3,384,033 - MPMX20_03213 0.60 -1.6 3,384,033 - MPMX20_03213 0.60 -1.8 3,384,033 - MPMX20_03213 0.60 -0.6 3,384,102 - MPMX20_03213 0.63 +0.1 3,384,245 - MPMX20_03213 0.68 -1.1 3,384,347 - MPMX20_03213 0.72 -0.1 3,384,403 - MPMX20_03213 0.74 -0.8 3,384,408 - MPMX20_03213 0.74 -1.3 3,384,587 - MPMX20_03213 0.80 -0.6 3,384,768 + MPMX20_03213 0.87 +0.4 3,384,847 - MPMX20_03213 0.90 -0.4 3,384,913 + -0.4 3,384,931 - +0.6 3,384,996 + +0.3 3,384,996 + -1.8 3,384,999 - +0.9 3,385,001 + -1.7 3,385,077 + -1.7 3,385,091 - +0.1 3,385,138 + -1.7 3,385,143 + -1.8 3,385,301 - -3.0 3,385,349 - MPMX20_03214 0.13 -2.4 3,385,421 + MPMX20_03214 0.18 -0.3 3,385,429 - MPMX20_03214 0.19 -2.0 3,385,446 + MPMX20_03214 0.20 -0.1 3,385,446 + MPMX20_03214 0.20 +0.9 3,385,454 - MPMX20_03214 0.21 +1.9 3,385,454 - MPMX20_03214 0.21 -1.7 3,385,454 - MPMX20_03214 0.21 -2.6 3,385,454 - MPMX20_03214 0.21 -0.4 3,385,454 - MPMX20_03214 0.21 -0.8 3,385,454 - MPMX20_03214 0.21 -0.7 3,385,593 + MPMX20_03214 0.31 +1.3 3,385,848 + MPMX20_03214 0.50 +0.6 3,385,857 - MPMX20_03214 0.51 -0.9 3,385,895 - MPMX20_03214 0.54 -0.3 3,385,923 + MPMX20_03214 0.56 -0.3 3,385,946 + MPMX20_03214 0.58 -1.0 3,385,954 - MPMX20_03214 0.58 -0.9 3,385,973 - MPMX20_03214 0.60 -1.3 3,385,973 - MPMX20_03214 0.60 +1.3 3,385,988 + MPMX20_03214 0.61 -0.8 3,385,988 + MPMX20_03214 0.61 +0.6 3,385,996 - MPMX20_03214 0.61 -1.3 3,386,005 - MPMX20_03214 0.62 -0.9 3,386,104 - MPMX20_03214 0.70 -0.8
Or see this region's nucleotide sequence