Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03210 and MPMX20_03211 are separated by 10 nucleotides MPMX20_03211 and MPMX20_03212 are separated by 13 nucleotides MPMX20_03212 and MPMX20_03213 overlap by 4 nucleotides
MPMX20_03210: MPMX20_03210 - NADH-quinone oxidoreductase subunit J, at 3,380,299 to 3,380,853
_03210
MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406
_03211
MPMX20_03212: MPMX20_03212 - NADH-quinone oxidoreductase subunit H, at 3,381,420 to 3,382,397
_03212
MPMX20_03213: MPMX20_03213 - NADH-quinone oxidoreductase subunit G, at 3,382,394 to 3,385,120
_03213
Position (kb)
3381
3382
3383 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3380.423 kb on - strand, within MPMX20_03210 at 3380.447 kb on + strand, within MPMX20_03210 at 3380.472 kb on + strand, within MPMX20_03210 at 3380.480 kb on - strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.784 kb on - strand, within MPMX20_03210 at 3380.788 kb on - strand, within MPMX20_03210 at 3380.814 kb on + strand at 3380.863 kb on - strand at 3380.915 kb on + strand at 3380.915 kb on + strand at 3380.916 kb on - strand at 3380.960 kb on + strand, within MPMX20_03211 at 3381.027 kb on + strand, within MPMX20_03211 at 3381.087 kb on + strand, within MPMX20_03211 at 3381.214 kb on + strand, within MPMX20_03211 at 3381.222 kb on - strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.240 kb on - strand, within MPMX20_03211 at 3381.240 kb on - strand, within MPMX20_03211 at 3381.268 kb on + strand, within MPMX20_03211 at 3381.350 kb on + strand, within MPMX20_03211 at 3381.352 kb on + strand at 3381.410 kb on + strand at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.606 kb on + strand, within MPMX20_03212 at 3381.633 kb on - strand, within MPMX20_03212 at 3381.690 kb on - strand, within MPMX20_03212 at 3381.772 kb on + strand, within MPMX20_03212 at 3381.775 kb on - strand, within MPMX20_03212 at 3381.782 kb on + strand, within MPMX20_03212 at 3381.972 kb on - strand, within MPMX20_03212 at 3382.059 kb on + strand, within MPMX20_03212 at 3382.067 kb on - strand, within MPMX20_03212 at 3382.177 kb on + strand, within MPMX20_03212 at 3382.228 kb on - strand, within MPMX20_03212 at 3382.242 kb on - strand, within MPMX20_03212 at 3382.317 kb on + strand at 3382.455 kb on + strand at 3382.483 kb on - strand at 3382.560 kb on + strand at 3382.602 kb on + strand at 3382.641 kb on + strand at 3382.679 kb on - strand, within MPMX20_03213 at 3382.736 kb on - strand, within MPMX20_03213 at 3382.763 kb on + strand, within MPMX20_03213 at 3382.810 kb on - strand, within MPMX20_03213 at 3382.841 kb on + strand, within MPMX20_03213 at 3382.849 kb on - strand, within MPMX20_03213 at 3382.890 kb on - strand, within MPMX20_03213 at 3382.901 kb on - strand, within MPMX20_03213 at 3382.937 kb on - strand, within MPMX20_03213 at 3382.967 kb on - strand, within MPMX20_03213 at 3383.000 kb on - strand, within MPMX20_03213 at 3383.131 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.139 kb on - strand, within MPMX20_03213 at 3383.146 kb on - strand, within MPMX20_03213 at 3383.146 kb on - strand, within MPMX20_03213 at 3383.156 kb on - strand, within MPMX20_03213 at 3383.158 kb on - strand, within MPMX20_03213 at 3383.162 kb on + strand, within MPMX20_03213 at 3383.195 kb on + strand, within MPMX20_03213 at 3383.255 kb on + strand, within MPMX20_03213 at 3383.359 kb on + strand, within MPMX20_03213 at 3383.361 kb on + strand, within MPMX20_03213 at 3383.369 kb on - strand, within MPMX20_03213 at 3383.374 kb on - strand, within MPMX20_03213
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,380,423 - MPMX20_03210 0.22 -1.4 3,380,447 + MPMX20_03210 0.27 +1.9 3,380,472 + MPMX20_03210 0.31 +0.6 3,380,480 - MPMX20_03210 0.33 -1.8 3,380,573 + MPMX20_03210 0.49 -2.3 3,380,573 + MPMX20_03210 0.49 -1.0 3,380,573 + MPMX20_03210 0.49 +2.9 3,380,581 - MPMX20_03210 0.51 -1.7 3,380,581 - MPMX20_03210 0.51 -0.9 3,380,594 - MPMX20_03210 0.53 -0.7 3,380,594 - MPMX20_03210 0.53 -1.4 3,380,726 - MPMX20_03210 0.77 -1.6 3,380,726 - MPMX20_03210 0.77 -0.1 3,380,784 - MPMX20_03210 0.87 -1.8 3,380,788 - MPMX20_03210 0.88 +0.7 3,380,814 + +0.3 3,380,863 - -1.7 3,380,915 + +1.1 3,380,915 + -0.7 3,380,916 - +0.9 3,380,960 + MPMX20_03211 0.18 -1.3 3,381,027 + MPMX20_03211 0.30 +0.6 3,381,087 + MPMX20_03211 0.41 -1.7 3,381,214 + MPMX20_03211 0.64 +0.6 3,381,222 - MPMX20_03211 0.66 +0.3 3,381,232 + MPMX20_03211 0.68 +0.6 3,381,232 + MPMX20_03211 0.68 -0.4 3,381,232 + MPMX20_03211 0.68 -1.7 3,381,240 - MPMX20_03211 0.69 +0.2 3,381,240 - MPMX20_03211 0.69 -1.4 3,381,268 + MPMX20_03211 0.74 -0.9 3,381,350 + MPMX20_03211 0.90 -0.1 3,381,352 + +0.9 3,381,410 + -1.0 3,381,528 + MPMX20_03212 0.11 +2.9 3,381,528 + MPMX20_03212 0.11 +0.1 3,381,528 + MPMX20_03212 0.11 -1.6 3,381,536 - MPMX20_03212 0.12 -1.1 3,381,536 - MPMX20_03212 0.12 +0.1 3,381,536 - MPMX20_03212 0.12 +0.9 3,381,536 - MPMX20_03212 0.12 +1.3 3,381,606 + MPMX20_03212 0.19 +1.5 3,381,633 - MPMX20_03212 0.22 -1.0 3,381,690 - MPMX20_03212 0.28 -1.1 3,381,772 + MPMX20_03212 0.36 -1.3 3,381,775 - MPMX20_03212 0.36 -2.0 3,381,782 + MPMX20_03212 0.37 -0.6 3,381,972 - MPMX20_03212 0.56 -0.4 3,382,059 + MPMX20_03212 0.65 +0.6 3,382,067 - MPMX20_03212 0.66 -0.8 3,382,177 + MPMX20_03212 0.77 -2.3 3,382,228 - MPMX20_03212 0.83 -1.7 3,382,242 - MPMX20_03212 0.84 -1.5 3,382,317 + +0.9 3,382,455 + -1.6 3,382,483 - +0.1 3,382,560 + -1.8 3,382,602 + +0.1 3,382,641 + -2.3 3,382,679 - MPMX20_03213 0.10 +0.6 3,382,736 - MPMX20_03213 0.13 -1.9 3,382,763 + MPMX20_03213 0.14 -0.1 3,382,810 - MPMX20_03213 0.15 +0.8 3,382,841 + MPMX20_03213 0.16 -1.5 3,382,849 - MPMX20_03213 0.17 +1.1 3,382,890 - MPMX20_03213 0.18 +0.1 3,382,901 - MPMX20_03213 0.19 -1.1 3,382,937 - MPMX20_03213 0.20 -1.0 3,382,967 - MPMX20_03213 0.21 +0.1 3,383,000 - MPMX20_03213 0.22 +1.3 3,383,131 + MPMX20_03213 0.27 -1.6 3,383,138 + MPMX20_03213 0.27 -0.1 3,383,138 + MPMX20_03213 0.27 +0.8 3,383,138 + MPMX20_03213 0.27 +0.3 3,383,139 - MPMX20_03213 0.27 -0.4 3,383,146 - MPMX20_03213 0.28 -1.1 3,383,146 - MPMX20_03213 0.28 -2.2 3,383,156 - MPMX20_03213 0.28 +1.3 3,383,158 - MPMX20_03213 0.28 -0.9 3,383,162 + MPMX20_03213 0.28 -0.4 3,383,195 + MPMX20_03213 0.29 -0.3 3,383,255 + MPMX20_03213 0.32 -1.3 3,383,359 + MPMX20_03213 0.35 -0.3 3,383,361 + MPMX20_03213 0.35 -0.6 3,383,369 - MPMX20_03213 0.36 +0.9 3,383,374 - MPMX20_03213 0.36 -2.0
Or see this region's nucleotide sequence