Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03208 and MPMX20_03209 overlap by 4 nucleotides MPMX20_03209 and MPMX20_03210 overlap by 4 nucleotides MPMX20_03210 and MPMX20_03211 are separated by 10 nucleotides MPMX20_03211 and MPMX20_03212 are separated by 13 nucleotides
MPMX20_03208: MPMX20_03208 - NADH-quinone oxidoreductase subunit L, at 3,378,162 to 3,380,003
_03208
MPMX20_03209: MPMX20_03209 - NADH-quinone oxidoreductase subunit K, at 3,380,000 to 3,380,302
_03209
MPMX20_03210: MPMX20_03210 - NADH-quinone oxidoreductase subunit J, at 3,380,299 to 3,380,853
_03210
MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406
_03211
MPMX20_03212: MPMX20_03212 - NADH-quinone oxidoreductase subunit H, at 3,381,420 to 3,382,397
_03212
Position (kb)
3380
3381 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3379.323 kb on - strand, within MPMX20_03208 at 3379.346 kb on + strand, within MPMX20_03208 at 3379.346 kb on + strand, within MPMX20_03208 at 3379.354 kb on - strand, within MPMX20_03208 at 3379.390 kb on + strand, within MPMX20_03208 at 3379.451 kb on + strand, within MPMX20_03208 at 3379.462 kb on + strand, within MPMX20_03208 at 3379.482 kb on + strand, within MPMX20_03208 at 3379.568 kb on + strand, within MPMX20_03208 at 3379.640 kb on + strand, within MPMX20_03208 at 3379.756 kb on - strand, within MPMX20_03208 at 3379.799 kb on + strand, within MPMX20_03208 at 3379.886 kb on + strand at 3379.894 kb on - strand at 3379.955 kb on + strand at 3379.991 kb on - strand at 3380.054 kb on + strand, within MPMX20_03209 at 3380.074 kb on + strand, within MPMX20_03209 at 3380.138 kb on - strand, within MPMX20_03209 at 3380.168 kb on + strand, within MPMX20_03209 at 3380.244 kb on + strand, within MPMX20_03209 at 3380.257 kb on - strand, within MPMX20_03209 at 3380.397 kb on - strand, within MPMX20_03210 at 3380.423 kb on - strand, within MPMX20_03210 at 3380.447 kb on + strand, within MPMX20_03210 at 3380.472 kb on + strand, within MPMX20_03210 at 3380.480 kb on - strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.784 kb on - strand, within MPMX20_03210 at 3380.788 kb on - strand, within MPMX20_03210 at 3380.814 kb on + strand at 3380.863 kb on - strand at 3380.915 kb on + strand at 3380.915 kb on + strand at 3380.916 kb on - strand at 3380.960 kb on + strand, within MPMX20_03211 at 3381.027 kb on + strand, within MPMX20_03211 at 3381.087 kb on + strand, within MPMX20_03211 at 3381.214 kb on + strand, within MPMX20_03211 at 3381.222 kb on - strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.240 kb on - strand, within MPMX20_03211 at 3381.240 kb on - strand, within MPMX20_03211 at 3381.268 kb on + strand, within MPMX20_03211 at 3381.350 kb on + strand, within MPMX20_03211 at 3381.352 kb on + strand at 3381.410 kb on + strand at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.606 kb on + strand, within MPMX20_03212 at 3381.633 kb on - strand, within MPMX20_03212 at 3381.690 kb on - strand, within MPMX20_03212 at 3381.772 kb on + strand, within MPMX20_03212 at 3381.775 kb on - strand, within MPMX20_03212 at 3381.782 kb on + strand, within MPMX20_03212
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,379,323 - MPMX20_03208 0.63 +0.3 3,379,346 + MPMX20_03208 0.64 +0.9 3,379,346 + MPMX20_03208 0.64 -1.3 3,379,354 - MPMX20_03208 0.65 +0.7 3,379,390 + MPMX20_03208 0.67 -0.9 3,379,451 + MPMX20_03208 0.70 -0.4 3,379,462 + MPMX20_03208 0.71 +1.3 3,379,482 + MPMX20_03208 0.72 -1.6 3,379,568 + MPMX20_03208 0.76 -0.4 3,379,640 + MPMX20_03208 0.80 -1.5 3,379,756 - MPMX20_03208 0.87 -1.4 3,379,799 + MPMX20_03208 0.89 -1.7 3,379,886 + +0.6 3,379,894 - -1.1 3,379,955 + +0.3 3,379,991 - -0.1 3,380,054 + MPMX20_03209 0.18 -0.7 3,380,074 + MPMX20_03209 0.24 -0.7 3,380,138 - MPMX20_03209 0.46 -1.7 3,380,168 + MPMX20_03209 0.55 -0.3 3,380,244 + MPMX20_03209 0.81 -0.8 3,380,257 - MPMX20_03209 0.85 +0.3 3,380,397 - MPMX20_03210 0.18 +2.9 3,380,423 - MPMX20_03210 0.22 -1.4 3,380,447 + MPMX20_03210 0.27 +1.9 3,380,472 + MPMX20_03210 0.31 +0.6 3,380,480 - MPMX20_03210 0.33 -1.8 3,380,573 + MPMX20_03210 0.49 -2.3 3,380,573 + MPMX20_03210 0.49 -1.0 3,380,573 + MPMX20_03210 0.49 +2.9 3,380,581 - MPMX20_03210 0.51 -1.7 3,380,581 - MPMX20_03210 0.51 -0.9 3,380,594 - MPMX20_03210 0.53 -0.7 3,380,594 - MPMX20_03210 0.53 -1.4 3,380,726 - MPMX20_03210 0.77 -1.6 3,380,726 - MPMX20_03210 0.77 -0.1 3,380,784 - MPMX20_03210 0.87 -1.8 3,380,788 - MPMX20_03210 0.88 +0.7 3,380,814 + +0.3 3,380,863 - -1.7 3,380,915 + +1.1 3,380,915 + -0.7 3,380,916 - +0.9 3,380,960 + MPMX20_03211 0.18 -1.3 3,381,027 + MPMX20_03211 0.30 +0.6 3,381,087 + MPMX20_03211 0.41 -1.7 3,381,214 + MPMX20_03211 0.64 +0.6 3,381,222 - MPMX20_03211 0.66 +0.3 3,381,232 + MPMX20_03211 0.68 +0.6 3,381,232 + MPMX20_03211 0.68 -0.4 3,381,232 + MPMX20_03211 0.68 -1.7 3,381,240 - MPMX20_03211 0.69 +0.2 3,381,240 - MPMX20_03211 0.69 -1.4 3,381,268 + MPMX20_03211 0.74 -0.9 3,381,350 + MPMX20_03211 0.90 -0.1 3,381,352 + +0.9 3,381,410 + -1.0 3,381,528 + MPMX20_03212 0.11 +2.9 3,381,528 + MPMX20_03212 0.11 +0.1 3,381,528 + MPMX20_03212 0.11 -1.6 3,381,536 - MPMX20_03212 0.12 -1.1 3,381,536 - MPMX20_03212 0.12 +0.1 3,381,536 - MPMX20_03212 0.12 +0.9 3,381,536 - MPMX20_03212 0.12 +1.3 3,381,606 + MPMX20_03212 0.19 +1.5 3,381,633 - MPMX20_03212 0.22 -1.0 3,381,690 - MPMX20_03212 0.28 -1.1 3,381,772 + MPMX20_03212 0.36 -1.3 3,381,775 - MPMX20_03212 0.36 -2.0 3,381,782 + MPMX20_03212 0.37 -0.6
Or see this region's nucleotide sequence