Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03206 and MPMX20_03207 are separated by 6 nucleotides MPMX20_03207 and MPMX20_03208 are separated by 76 nucleotides
MPMX20_03206: MPMX20_03206 - NADH-quinone oxidoreductase subunit N, at 3,375,092 to 3,376,549
_03206
MPMX20_03207: MPMX20_03207 - NADH-quinone oxidoreductase subunit M, at 3,376,556 to 3,378,085
_03207
MPMX20_03208: MPMX20_03208 - NADH-quinone oxidoreductase subunit L, at 3,378,162 to 3,380,003
_03208
Position (kb)
3376
3377
3378
3379 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3375.570 kb on - strand, within MPMX20_03206 at 3375.619 kb on + strand, within MPMX20_03206 at 3375.637 kb on - strand, within MPMX20_03206 at 3375.707 kb on + strand, within MPMX20_03206 at 3375.728 kb on + strand, within MPMX20_03206 at 3375.795 kb on - strand, within MPMX20_03206 at 3375.830 kb on + strand, within MPMX20_03206 at 3375.831 kb on + strand, within MPMX20_03206 at 3375.838 kb on - strand, within MPMX20_03206 at 3375.838 kb on - strand, within MPMX20_03206 at 3375.894 kb on - strand, within MPMX20_03206 at 3375.898 kb on + strand, within MPMX20_03206 at 3375.975 kb on + strand, within MPMX20_03206 at 3376.012 kb on - strand, within MPMX20_03206 at 3376.022 kb on - strand, within MPMX20_03206 at 3376.022 kb on - strand, within MPMX20_03206 at 3376.133 kb on - strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.158 kb on - strand, within MPMX20_03206 at 3376.163 kb on + strand, within MPMX20_03206 at 3376.166 kb on - strand, within MPMX20_03206 at 3376.181 kb on - strand, within MPMX20_03206 at 3376.299 kb on + strand, within MPMX20_03206 at 3376.310 kb on + strand, within MPMX20_03206 at 3376.317 kb on + strand, within MPMX20_03206 at 3376.317 kb on + strand, within MPMX20_03206 at 3376.320 kb on + strand, within MPMX20_03206 at 3376.322 kb on + strand, within MPMX20_03206 at 3376.323 kb on - strand, within MPMX20_03206 at 3376.349 kb on + strand, within MPMX20_03206 at 3376.379 kb on - strand, within MPMX20_03206 at 3376.384 kb on - strand, within MPMX20_03206 at 3376.402 kb on + strand, within MPMX20_03206 at 3376.408 kb on - strand at 3376.432 kb on + strand at 3376.592 kb on + strand at 3376.748 kb on + strand, within MPMX20_03207 at 3376.796 kb on + strand, within MPMX20_03207 at 3376.837 kb on + strand, within MPMX20_03207 at 3376.855 kb on - strand, within MPMX20_03207 at 3376.890 kb on + strand, within MPMX20_03207 at 3376.983 kb on - strand, within MPMX20_03207 at 3377.028 kb on + strand, within MPMX20_03207 at 3377.107 kb on + strand, within MPMX20_03207 at 3377.154 kb on + strand, within MPMX20_03207 at 3377.162 kb on - strand, within MPMX20_03207 at 3377.174 kb on + strand, within MPMX20_03207 at 3377.175 kb on + strand, within MPMX20_03207 at 3377.192 kb on - strand, within MPMX20_03207 at 3377.260 kb on + strand, within MPMX20_03207 at 3377.265 kb on + strand, within MPMX20_03207 at 3377.311 kb on + strand, within MPMX20_03207 at 3377.396 kb on + strand, within MPMX20_03207 at 3377.408 kb on + strand, within MPMX20_03207 at 3377.498 kb on - strand, within MPMX20_03207 at 3377.575 kb on - strand, within MPMX20_03207 at 3377.711 kb on + strand, within MPMX20_03207 at 3377.734 kb on + strand, within MPMX20_03207 at 3377.798 kb on - strand, within MPMX20_03207 at 3377.839 kb on - strand, within MPMX20_03207 at 3377.853 kb on - strand, within MPMX20_03207 at 3377.905 kb on - strand, within MPMX20_03207 at 3377.956 kb on + strand at 3377.964 kb on - strand at 3377.964 kb on - strand at 3378.117 kb on - strand at 3378.129 kb on - strand at 3378.172 kb on + strand at 3378.173 kb on - strand at 3378.258 kb on + strand at 3378.319 kb on + strand at 3378.339 kb on + strand at 3378.386 kb on - strand, within MPMX20_03208 at 3378.471 kb on + strand, within MPMX20_03208 at 3378.500 kb on - strand, within MPMX20_03208 at 3378.609 kb on + strand, within MPMX20_03208 at 3378.662 kb on - strand, within MPMX20_03208 at 3378.874 kb on + strand, within MPMX20_03208 at 3378.966 kb on + strand, within MPMX20_03208 at 3378.984 kb on - strand, within MPMX20_03208
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,375,570 - MPMX20_03206 0.33 +1.3 3,375,619 + MPMX20_03206 0.36 -2.0 3,375,637 - MPMX20_03206 0.37 +1.9 3,375,707 + MPMX20_03206 0.42 -1.0 3,375,728 + MPMX20_03206 0.44 +0.1 3,375,795 - MPMX20_03206 0.48 -0.4 3,375,830 + MPMX20_03206 0.51 -0.1 3,375,831 + MPMX20_03206 0.51 -0.4 3,375,838 - MPMX20_03206 0.51 +0.3 3,375,838 - MPMX20_03206 0.51 -0.8 3,375,894 - MPMX20_03206 0.55 +1.3 3,375,898 + MPMX20_03206 0.55 -1.1 3,375,975 + MPMX20_03206 0.61 +1.1 3,376,012 - MPMX20_03206 0.63 -0.4 3,376,022 - MPMX20_03206 0.64 -0.1 3,376,022 - MPMX20_03206 0.64 -0.3 3,376,133 - MPMX20_03206 0.71 -0.6 3,376,150 + MPMX20_03206 0.73 +0.1 3,376,150 + MPMX20_03206 0.73 -0.9 3,376,150 + MPMX20_03206 0.73 -0.4 3,376,150 + MPMX20_03206 0.73 +0.1 3,376,158 - MPMX20_03206 0.73 +2.5 3,376,163 + MPMX20_03206 0.73 -0.4 3,376,166 - MPMX20_03206 0.74 -1.3 3,376,181 - MPMX20_03206 0.75 -0.8 3,376,299 + MPMX20_03206 0.83 -0.1 3,376,310 + MPMX20_03206 0.84 -1.0 3,376,317 + MPMX20_03206 0.84 +0.1 3,376,317 + MPMX20_03206 0.84 +0.3 3,376,320 + MPMX20_03206 0.84 +0.6 3,376,322 + MPMX20_03206 0.84 -0.4 3,376,323 - MPMX20_03206 0.84 -2.5 3,376,349 + MPMX20_03206 0.86 -0.9 3,376,379 - MPMX20_03206 0.88 -1.8 3,376,384 - MPMX20_03206 0.89 -1.3 3,376,402 + MPMX20_03206 0.90 +0.3 3,376,408 - -1.8 3,376,432 + +0.9 3,376,592 + +0.5 3,376,748 + MPMX20_03207 0.13 -0.5 3,376,796 + MPMX20_03207 0.16 -1.3 3,376,837 + MPMX20_03207 0.18 -1.5 3,376,855 - MPMX20_03207 0.20 +0.1 3,376,890 + MPMX20_03207 0.22 +0.1 3,376,983 - MPMX20_03207 0.28 -0.9 3,377,028 + MPMX20_03207 0.31 -1.0 3,377,107 + MPMX20_03207 0.36 -0.5 3,377,154 + MPMX20_03207 0.39 -0.1 3,377,162 - MPMX20_03207 0.40 +1.9 3,377,174 + MPMX20_03207 0.40 +1.9 3,377,175 + MPMX20_03207 0.40 -0.4 3,377,192 - MPMX20_03207 0.42 -0.9 3,377,260 + MPMX20_03207 0.46 +0.1 3,377,265 + MPMX20_03207 0.46 -2.1 3,377,311 + MPMX20_03207 0.49 -0.7 3,377,396 + MPMX20_03207 0.55 -0.1 3,377,408 + MPMX20_03207 0.56 -0.5 3,377,498 - MPMX20_03207 0.62 +1.3 3,377,575 - MPMX20_03207 0.67 -0.4 3,377,711 + MPMX20_03207 0.75 -2.6 3,377,734 + MPMX20_03207 0.77 +2.9 3,377,798 - MPMX20_03207 0.81 +1.3 3,377,839 - MPMX20_03207 0.84 -0.8 3,377,853 - MPMX20_03207 0.85 -0.9 3,377,905 - MPMX20_03207 0.88 +0.6 3,377,956 + -0.7 3,377,964 - -0.8 3,377,964 - -0.9 3,378,117 - -2.1 3,378,129 - +0.0 3,378,172 + +1.3 3,378,173 - -0.7 3,378,258 + -1.1 3,378,319 + -1.3 3,378,339 + -1.7 3,378,386 - MPMX20_03208 0.12 +0.1 3,378,471 + MPMX20_03208 0.17 -1.3 3,378,500 - MPMX20_03208 0.18 -0.9 3,378,609 + MPMX20_03208 0.24 -0.1 3,378,662 - MPMX20_03208 0.27 +0.1 3,378,874 + MPMX20_03208 0.39 -0.3 3,378,966 + MPMX20_03208 0.44 -0.4 3,378,984 - MPMX20_03208 0.45 -0.3
Or see this region's nucleotide sequence