Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03200 and MPMX20_03201 are separated by 88 nucleotides MPMX20_03201 and MPMX20_03202 are separated by 95 nucleotides MPMX20_03202 and MPMX20_03203 are separated by 53 nucleotides MPMX20_03203 and MPMX20_03204 are separated by 70 nucleotides
MPMX20_03200: MPMX20_03200 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 3,368,962 to 3,370,632
_03200
MPMX20_03201: MPMX20_03201 - Isochorismate synthase MenF, at 3,370,721 to 3,372,016
_03201
MPMX20_03202: MPMX20_03202 - Protein ElaB, at 3,372,112 to 3,372,417
_03202
MPMX20_03203: MPMX20_03203 - Protein ElaA, at 3,372,471 to 3,372,932
_03203
MPMX20_03204: MPMX20_03204 - Ribonuclease BN, at 3,373,003 to 3,373,920
_03204
Position (kb)
3370
3371
3372
3373 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3369.723 kb on - strand, within MPMX20_03200 at 3369.742 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.771 kb on - strand, within MPMX20_03200 at 3369.773 kb on + strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.853 kb on - strand, within MPMX20_03200 at 3369.853 kb on - strand, within MPMX20_03200 at 3369.941 kb on + strand, within MPMX20_03200 at 3369.944 kb on + strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3370.070 kb on - strand, within MPMX20_03200 at 3370.160 kb on + strand, within MPMX20_03200 at 3370.207 kb on + strand, within MPMX20_03200 at 3370.279 kb on - strand, within MPMX20_03200 at 3370.284 kb on - strand, within MPMX20_03200 at 3370.310 kb on - strand, within MPMX20_03200 at 3370.378 kb on - strand, within MPMX20_03200 at 3370.561 kb on + strand at 3370.584 kb on - strand at 3370.628 kb on + strand at 3370.629 kb on + strand at 3370.637 kb on - strand at 3370.663 kb on + strand at 3370.698 kb on + strand at 3370.718 kb on + strand at 3370.725 kb on + strand at 3370.742 kb on + strand at 3370.778 kb on + strand at 3370.778 kb on + strand at 3370.786 kb on - strand at 3370.789 kb on + strand at 3370.932 kb on + strand, within MPMX20_03201 at 3371.104 kb on + strand, within MPMX20_03201 at 3371.111 kb on - strand, within MPMX20_03201 at 3371.116 kb on + strand, within MPMX20_03201 at 3371.118 kb on - strand, within MPMX20_03201 at 3371.124 kb on - strand, within MPMX20_03201 at 3371.156 kb on - strand, within MPMX20_03201 at 3371.365 kb on - strand, within MPMX20_03201 at 3371.398 kb on + strand, within MPMX20_03201 at 3371.398 kb on + strand, within MPMX20_03201 at 3371.404 kb on - strand, within MPMX20_03201 at 3371.406 kb on - strand, within MPMX20_03201 at 3371.422 kb on + strand, within MPMX20_03201 at 3371.443 kb on - strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.472 kb on - strand, within MPMX20_03201 at 3371.838 kb on + strand, within MPMX20_03201 at 3371.875 kb on + strand, within MPMX20_03201 at 3371.891 kb on + strand at 3371.957 kb on + strand at 3372.080 kb on + strand at 3372.088 kb on - strand at 3372.110 kb on + strand at 3372.110 kb on + strand at 3372.122 kb on + strand at 3372.161 kb on + strand, within MPMX20_03202 at 3372.254 kb on - strand, within MPMX20_03202 at 3372.340 kb on + strand, within MPMX20_03202 at 3372.341 kb on + strand, within MPMX20_03202 at 3372.348 kb on - strand, within MPMX20_03202 at 3372.398 kb on + strand at 3372.439 kb on - strand at 3372.440 kb on - strand at 3372.442 kb on + strand at 3372.456 kb on + strand at 3372.531 kb on - strand, within MPMX20_03203 at 3372.538 kb on - strand, within MPMX20_03203 at 3372.601 kb on - strand, within MPMX20_03203 at 3372.713 kb on + strand, within MPMX20_03203 at 3372.774 kb on + strand, within MPMX20_03203 at 3372.829 kb on + strand, within MPMX20_03203 at 3372.842 kb on - strand, within MPMX20_03203 at 3372.865 kb on + strand, within MPMX20_03203 at 3372.909 kb on + strand at 3372.917 kb on - strand at 3372.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,369,723 - MPMX20_03200 0.46 +1.0 3,369,742 + MPMX20_03200 0.47 -1.5 3,369,768 + MPMX20_03200 0.48 -1.4 3,369,768 + MPMX20_03200 0.48 -0.6 3,369,768 + MPMX20_03200 0.48 +0.9 3,369,768 + MPMX20_03200 0.48 +2.2 3,369,768 + MPMX20_03200 0.48 -0.8 3,369,768 + MPMX20_03200 0.48 -0.8 3,369,768 + MPMX20_03200 0.48 -0.4 3,369,768 + MPMX20_03200 0.48 -1.1 3,369,771 - MPMX20_03200 0.48 -2.5 3,369,773 + MPMX20_03200 0.49 -0.5 3,369,776 - MPMX20_03200 0.49 -2.0 3,369,776 - MPMX20_03200 0.49 -0.0 3,369,776 - MPMX20_03200 0.49 -0.2 3,369,776 - MPMX20_03200 0.49 -2.2 3,369,776 - MPMX20_03200 0.49 +0.9 3,369,776 - MPMX20_03200 0.49 -2.8 3,369,776 - MPMX20_03200 0.49 -1.8 3,369,776 - MPMX20_03200 0.49 -1.3 3,369,776 - MPMX20_03200 0.49 -0.8 3,369,853 - MPMX20_03200 0.53 -0.5 3,369,853 - MPMX20_03200 0.53 -0.7 3,369,941 + MPMX20_03200 0.59 +0.1 3,369,944 + MPMX20_03200 0.59 -2.0 3,369,949 - MPMX20_03200 0.59 -0.1 3,369,949 - MPMX20_03200 0.59 +0.1 3,369,949 - MPMX20_03200 0.59 -2.1 3,370,070 - MPMX20_03200 0.66 -0.3 3,370,160 + MPMX20_03200 0.72 -1.8 3,370,207 + MPMX20_03200 0.75 -1.1 3,370,279 - MPMX20_03200 0.79 +0.4 3,370,284 - MPMX20_03200 0.79 -1.2 3,370,310 - MPMX20_03200 0.81 -1.7 3,370,378 - MPMX20_03200 0.85 +0.0 3,370,561 + +1.9 3,370,584 - +0.1 3,370,628 + +0.7 3,370,629 + +0.1 3,370,637 - +0.9 3,370,663 + +0.6 3,370,698 + -0.1 3,370,718 + +0.6 3,370,725 + -0.9 3,370,742 + +0.9 3,370,778 + -2.8 3,370,778 + -0.4 3,370,786 - +1.3 3,370,789 + -0.5 3,370,932 + MPMX20_03201 0.16 -0.4 3,371,104 + MPMX20_03201 0.30 +0.5 3,371,111 - MPMX20_03201 0.30 -0.1 3,371,116 + MPMX20_03201 0.30 -1.0 3,371,118 - MPMX20_03201 0.31 +0.7 3,371,124 - MPMX20_03201 0.31 +0.1 3,371,156 - MPMX20_03201 0.34 -0.5 3,371,365 - MPMX20_03201 0.50 +1.3 3,371,398 + MPMX20_03201 0.52 -2.4 3,371,398 + MPMX20_03201 0.52 +3.3 3,371,404 - MPMX20_03201 0.53 +2.5 3,371,406 - MPMX20_03201 0.53 -0.6 3,371,422 + MPMX20_03201 0.54 +0.3 3,371,443 - MPMX20_03201 0.56 -0.3 3,371,471 + MPMX20_03201 0.58 -3.2 3,371,471 + MPMX20_03201 0.58 +1.9 3,371,471 + MPMX20_03201 0.58 -0.6 3,371,472 - MPMX20_03201 0.58 +1.3 3,371,838 + MPMX20_03201 0.86 +1.0 3,371,875 + MPMX20_03201 0.89 +0.0 3,371,891 + +0.1 3,371,957 + -0.1 3,372,080 + +0.3 3,372,088 - +0.6 3,372,110 + -0.8 3,372,110 + -0.6 3,372,122 + +0.3 3,372,161 + MPMX20_03202 0.16 -2.3 3,372,254 - MPMX20_03202 0.46 -1.5 3,372,340 + MPMX20_03202 0.75 -0.1 3,372,341 + MPMX20_03202 0.75 -1.0 3,372,348 - MPMX20_03202 0.77 -1.5 3,372,398 + -0.8 3,372,439 - -0.9 3,372,440 - -3.2 3,372,442 + -0.1 3,372,456 + +1.0 3,372,531 - MPMX20_03203 0.13 -0.3 3,372,538 - MPMX20_03203 0.15 +0.5 3,372,601 - MPMX20_03203 0.28 -0.3 3,372,713 + MPMX20_03203 0.52 -0.8 3,372,774 + MPMX20_03203 0.66 +0.1 3,372,829 + MPMX20_03203 0.77 -1.4 3,372,842 - MPMX20_03203 0.80 -0.8 3,372,865 + MPMX20_03203 0.85 -1.9 3,372,909 + -1.3 3,372,917 - -0.2 3,372,965 - -0.3
Or see this region's nucleotide sequence