Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02913 and MPMX20_02914 are separated by 117 nucleotides MPMX20_02914 and MPMX20_02915 are separated by 73 nucleotides MPMX20_02915 and MPMX20_02916 are separated by 41 nucleotides
MPMX20_02913: MPMX20_02913 - hypothetical protein, at 3,052,498 to 3,052,719
_02913
MPMX20_02914: MPMX20_02914 - HTH-type transcriptional regulator PrtR, at 3,052,837 to 3,053,547
_02914
MPMX20_02915: MPMX20_02915 - hypothetical protein, at 3,053,621 to 3,054,001
_02915
MPMX20_02916: MPMX20_02916 - hypothetical protein, at 3,054,043 to 3,054,252
_02916
Position (kb)
3053
3054
3055 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3052.647 kb on + strand, within MPMX20_02913 at 3052.650 kb on + strand, within MPMX20_02913 at 3052.818 kb on + strand at 3052.818 kb on + strand at 3053.591 kb on - strand at 3053.652 kb on - strand at 3053.652 kb on - strand at 3053.666 kb on - strand, within MPMX20_02915 at 3053.668 kb on - strand, within MPMX20_02915 at 3053.705 kb on + strand, within MPMX20_02915 at 3053.752 kb on + strand, within MPMX20_02915 at 3053.788 kb on - strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.799 kb on - strand, within MPMX20_02915 at 3053.799 kb on - strand, within MPMX20_02915 at 3053.799 kb on - strand, within MPMX20_02915 at 3053.838 kb on + strand, within MPMX20_02915 at 3053.853 kb on + strand, within MPMX20_02915 at 3053.853 kb on + strand, within MPMX20_02915 at 3053.858 kb on + strand, within MPMX20_02915 at 3053.861 kb on - strand, within MPMX20_02915 at 3053.861 kb on - strand, within MPMX20_02915 at 3053.866 kb on - strand, within MPMX20_02915 at 3053.907 kb on + strand, within MPMX20_02915 at 3053.908 kb on + strand, within MPMX20_02915 at 3053.912 kb on + strand, within MPMX20_02915 at 3053.916 kb on + strand, within MPMX20_02915 at 3053.920 kb on - strand, within MPMX20_02915 at 3053.923 kb on + strand, within MPMX20_02915 at 3053.947 kb on + strand, within MPMX20_02915 at 3053.955 kb on - strand, within MPMX20_02915 at 3053.955 kb on - strand, within MPMX20_02915 at 3053.955 kb on - strand, within MPMX20_02915 at 3053.959 kb on + strand, within MPMX20_02915 at 3053.996 kb on + strand at 3053.996 kb on + strand at 3054.008 kb on + strand at 3054.016 kb on - strand at 3054.044 kb on - strand at 3054.044 kb on - strand at 3054.046 kb on + strand at 3054.047 kb on - strand at 3054.054 kb on - strand at 3054.130 kb on + strand, within MPMX20_02916 at 3054.143 kb on - strand, within MPMX20_02916 at 3054.143 kb on - strand, within MPMX20_02916 at 3054.143 kb on - strand, within MPMX20_02916 at 3054.149 kb on + strand, within MPMX20_02916 at 3054.156 kb on + strand, within MPMX20_02916 at 3054.220 kb on - strand, within MPMX20_02916 at 3054.220 kb on - strand, within MPMX20_02916 at 3054.249 kb on - strand at 3054.281 kb on + strand at 3054.289 kb on - strand at 3054.428 kb on + strand at 3054.477 kb on + strand at 3054.498 kb on + strand at 3054.506 kb on - strand at 3054.537 kb on - strand at 3054.592 kb on + strand at 3054.600 kb on - strand at 3054.625 kb on + strand at 3054.625 kb on + strand at 3054.633 kb on - strand at 3054.649 kb on + strand at 3054.671 kb on + strand at 3054.692 kb on - strand at 3054.692 kb on - strand at 3054.749 kb on + strand at 3054.762 kb on - strand at 3054.779 kb on - strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.844 kb on - strand at 3054.861 kb on + strand at 3054.881 kb on + strand at 3054.907 kb on - strand at 3054.918 kb on + strand at 3054.918 kb on + strand at 3054.926 kb on - strand at 3054.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 3,052,647 + MPMX20_02913 0.67 -0.8 3,052,650 + MPMX20_02913 0.68 +0.5 3,052,818 + -0.2 3,052,818 + -0.0 3,053,591 - -0.3 3,053,652 - -0.5 3,053,652 - -3.1 3,053,666 - MPMX20_02915 0.12 -3.7 3,053,668 - MPMX20_02915 0.12 -1.1 3,053,705 + MPMX20_02915 0.22 -0.0 3,053,752 + MPMX20_02915 0.34 -2.2 3,053,788 - MPMX20_02915 0.44 -0.6 3,053,791 + MPMX20_02915 0.45 -1.3 3,053,791 + MPMX20_02915 0.45 -4.4 3,053,791 + MPMX20_02915 0.45 -0.1 3,053,791 + MPMX20_02915 0.45 -1.6 3,053,791 + MPMX20_02915 0.45 -1.2 3,053,791 + MPMX20_02915 0.45 +0.1 3,053,791 + MPMX20_02915 0.45 -0.9 3,053,791 + MPMX20_02915 0.45 -3.0 3,053,791 + MPMX20_02915 0.45 -2.3 3,053,791 + MPMX20_02915 0.45 -2.1 3,053,799 - MPMX20_02915 0.47 -0.4 3,053,799 - MPMX20_02915 0.47 -3.5 3,053,799 - MPMX20_02915 0.47 -1.2 3,053,838 + MPMX20_02915 0.57 -2.8 3,053,853 + MPMX20_02915 0.61 -1.1 3,053,853 + MPMX20_02915 0.61 -1.1 3,053,858 + MPMX20_02915 0.62 -0.9 3,053,861 - MPMX20_02915 0.63 -3.4 3,053,861 - MPMX20_02915 0.63 -0.8 3,053,866 - MPMX20_02915 0.64 +0.3 3,053,907 + MPMX20_02915 0.75 -2.3 3,053,908 + MPMX20_02915 0.75 -1.4 3,053,912 + MPMX20_02915 0.76 -1.0 3,053,916 + MPMX20_02915 0.77 -1.9 3,053,920 - MPMX20_02915 0.78 -0.3 3,053,923 + MPMX20_02915 0.79 -1.5 3,053,947 + MPMX20_02915 0.86 -3.5 3,053,955 - MPMX20_02915 0.88 +0.1 3,053,955 - MPMX20_02915 0.88 -1.7 3,053,955 - MPMX20_02915 0.88 +1.5 3,053,959 + MPMX20_02915 0.89 -1.2 3,053,996 + +0.8 3,053,996 + +0.7 3,054,008 + -1.6 3,054,016 - -2.1 3,054,044 - -0.5 3,054,044 - -0.9 3,054,046 + -1.2 3,054,047 - -1.0 3,054,054 - -1.8 3,054,130 + MPMX20_02916 0.41 -2.9 3,054,143 - MPMX20_02916 0.48 -1.9 3,054,143 - MPMX20_02916 0.48 -3.0 3,054,143 - MPMX20_02916 0.48 -3.0 3,054,149 + MPMX20_02916 0.50 -0.6 3,054,156 + MPMX20_02916 0.54 +1.2 3,054,220 - MPMX20_02916 0.84 -2.9 3,054,220 - MPMX20_02916 0.84 +0.9 3,054,249 - -2.9 3,054,281 + +0.7 3,054,289 - -1.3 3,054,428 + -1.5 3,054,477 + -0.8 3,054,498 + -1.0 3,054,506 - -1.0 3,054,537 - +0.4 3,054,592 + -2.0 3,054,600 - +1.1 3,054,625 + -0.9 3,054,625 + +0.8 3,054,633 - -1.3 3,054,649 + -1.7 3,054,671 + -1.3 3,054,692 - -2.1 3,054,692 - -2.1 3,054,749 + -2.2 3,054,762 - -1.8 3,054,779 - -0.4 3,054,796 + -3.0 3,054,796 + +1.8 3,054,796 + -2.6 3,054,844 - -3.0 3,054,861 + -0.3 3,054,881 + -0.8 3,054,907 - -0.2 3,054,918 + -1.7 3,054,918 + -2.1 3,054,926 - -2.2 3,054,953 + -0.5
Or see this region's nucleotide sequence