Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02625 and MPMX20_02626 are separated by 72 nucleotides MPMX20_02626 and MPMX20_02627 are separated by 106 nucleotides
MPMX20_02625: MPMX20_02625 - Nitrate regulatory protein, at 2,769,836 to 2,771,020
_02625
MPMX20_02626: MPMX20_02626 - Protein YchN, at 2,771,093 to 2,771,446
_02626
MPMX20_02627: MPMX20_02627 - Methyl-accepting chemotaxis protein PctC, at 2,771,553 to 2,773,337
_02627
Position (kb)
2771
2772 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2770.132 kb on + strand, within MPMX20_02625 at 2770.173 kb on - strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.218 kb on + strand, within MPMX20_02625 at 2770.218 kb on - strand, within MPMX20_02625 at 2770.254 kb on + strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.272 kb on - strand, within MPMX20_02625 at 2770.324 kb on - strand, within MPMX20_02625 at 2770.387 kb on - strand, within MPMX20_02625 at 2770.406 kb on + strand, within MPMX20_02625 at 2770.599 kb on - strand, within MPMX20_02625 at 2770.633 kb on - strand, within MPMX20_02625 at 2770.683 kb on + strand, within MPMX20_02625 at 2770.723 kb on - strand, within MPMX20_02625 at 2770.739 kb on + strand, within MPMX20_02625 at 2770.747 kb on - strand, within MPMX20_02625 at 2770.747 kb on - strand, within MPMX20_02625 at 2770.785 kb on - strand, within MPMX20_02625 at 2770.791 kb on + strand, within MPMX20_02625 at 2770.825 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.840 kb on + strand, within MPMX20_02625 at 2770.841 kb on - strand, within MPMX20_02625 at 2770.841 kb on - strand, within MPMX20_02625 at 2770.848 kb on - strand, within MPMX20_02625 at 2770.865 kb on + strand, within MPMX20_02625 at 2770.900 kb on + strand, within MPMX20_02625 at 2770.908 kb on + strand at 2770.916 kb on - strand at 2770.916 kb on - strand at 2770.916 kb on - strand at 2770.935 kb on + strand at 2770.938 kb on - strand at 2770.938 kb on - strand at 2770.943 kb on + strand at 2770.971 kb on + strand at 2770.971 kb on + strand at 2770.979 kb on - strand at 2771.028 kb on + strand at 2771.028 kb on + strand at 2771.126 kb on + strand at 2771.167 kb on - strand, within MPMX20_02626 at 2771.232 kb on + strand, within MPMX20_02626 at 2771.240 kb on - strand, within MPMX20_02626 at 2771.323 kb on + strand, within MPMX20_02626 at 2771.323 kb on + strand, within MPMX20_02626 at 2771.368 kb on + strand, within MPMX20_02626 at 2771.412 kb on - strand at 2771.511 kb on - strand at 2771.595 kb on + strand at 2771.657 kb on - strand at 2771.687 kb on - strand at 2771.753 kb on - strand, within MPMX20_02627 at 2771.813 kb on + strand, within MPMX20_02627 at 2771.893 kb on + strand, within MPMX20_02627 at 2771.942 kb on - strand, within MPMX20_02627 at 2771.947 kb on - strand, within MPMX20_02627 at 2771.956 kb on - strand, within MPMX20_02627 at 2772.029 kb on + strand, within MPMX20_02627 at 2772.057 kb on + strand, within MPMX20_02627 at 2772.065 kb on - strand, within MPMX20_02627 at 2772.075 kb on - strand, within MPMX20_02627 at 2772.157 kb on + strand, within MPMX20_02627 at 2772.169 kb on + strand, within MPMX20_02627 at 2772.177 kb on - strand, within MPMX20_02627 at 2772.199 kb on - strand, within MPMX20_02627 at 2772.317 kb on + strand, within MPMX20_02627 at 2772.320 kb on - strand, within MPMX20_02627 at 2772.320 kb on - strand, within MPMX20_02627 at 2772.389 kb on - strand, within MPMX20_02627 at 2772.395 kb on - strand, within MPMX20_02627 at 2772.431 kb on + strand, within MPMX20_02627
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 2,770,132 + MPMX20_02625 0.25 -1.2 2,770,173 - MPMX20_02625 0.28 -2.1 2,770,210 + MPMX20_02625 0.32 +0.0 2,770,210 + MPMX20_02625 0.32 -1.0 2,770,210 + MPMX20_02625 0.32 -0.7 2,770,218 + MPMX20_02625 0.32 -1.3 2,770,218 - MPMX20_02625 0.32 -1.7 2,770,254 + MPMX20_02625 0.35 -0.2 2,770,262 - MPMX20_02625 0.36 -0.1 2,770,262 - MPMX20_02625 0.36 +2.9 2,770,262 - MPMX20_02625 0.36 +1.1 2,770,262 - MPMX20_02625 0.36 +1.9 2,770,272 - MPMX20_02625 0.37 -0.3 2,770,324 - MPMX20_02625 0.41 +0.3 2,770,387 - MPMX20_02625 0.46 -2.5 2,770,406 + MPMX20_02625 0.48 +0.5 2,770,599 - MPMX20_02625 0.64 -1.0 2,770,633 - MPMX20_02625 0.67 -1.2 2,770,683 + MPMX20_02625 0.71 -2.4 2,770,723 - MPMX20_02625 0.75 -0.2 2,770,739 + MPMX20_02625 0.76 -0.2 2,770,747 - MPMX20_02625 0.77 +0.6 2,770,747 - MPMX20_02625 0.77 +0.2 2,770,785 - MPMX20_02625 0.80 +0.6 2,770,791 + MPMX20_02625 0.81 -0.2 2,770,825 - MPMX20_02625 0.83 -1.0 2,770,835 - MPMX20_02625 0.84 -1.9 2,770,835 - MPMX20_02625 0.84 +0.5 2,770,835 - MPMX20_02625 0.84 +0.5 2,770,840 + MPMX20_02625 0.85 +0.1 2,770,841 - MPMX20_02625 0.85 -1.9 2,770,841 - MPMX20_02625 0.85 +0.2 2,770,848 - MPMX20_02625 0.85 -1.2 2,770,865 + MPMX20_02625 0.87 +0.3 2,770,900 + MPMX20_02625 0.90 +0.6 2,770,908 + -1.4 2,770,916 - -2.8 2,770,916 - +1.5 2,770,916 - -0.6 2,770,935 + -0.6 2,770,938 - +0.1 2,770,938 - -2.1 2,770,943 + -1.2 2,770,971 + +1.2 2,770,971 + +0.6 2,770,979 - -2.5 2,771,028 + +0.7 2,771,028 + +3.5 2,771,126 + +1.0 2,771,167 - MPMX20_02626 0.21 -1.2 2,771,232 + MPMX20_02626 0.39 -0.6 2,771,240 - MPMX20_02626 0.42 +1.1 2,771,323 + MPMX20_02626 0.65 -0.4 2,771,323 + MPMX20_02626 0.65 -1.4 2,771,368 + MPMX20_02626 0.78 -1.3 2,771,412 - +1.6 2,771,511 - -0.5 2,771,595 + +0.7 2,771,657 - -1.0 2,771,687 - -3.4 2,771,753 - MPMX20_02627 0.11 +0.1 2,771,813 + MPMX20_02627 0.15 -0.2 2,771,893 + MPMX20_02627 0.19 -2.3 2,771,942 - MPMX20_02627 0.22 -1.5 2,771,947 - MPMX20_02627 0.22 -0.5 2,771,956 - MPMX20_02627 0.23 -0.9 2,772,029 + MPMX20_02627 0.27 -1.2 2,772,057 + MPMX20_02627 0.28 -0.5 2,772,065 - MPMX20_02627 0.29 -1.2 2,772,075 - MPMX20_02627 0.29 -0.8 2,772,157 + MPMX20_02627 0.34 +0.0 2,772,169 + MPMX20_02627 0.35 -2.1 2,772,177 - MPMX20_02627 0.35 -1.0 2,772,199 - MPMX20_02627 0.36 -1.7 2,772,317 + MPMX20_02627 0.43 +0.1 2,772,320 - MPMX20_02627 0.43 -0.9 2,772,320 - MPMX20_02627 0.43 -0.2 2,772,389 - MPMX20_02627 0.47 +0.7 2,772,395 - MPMX20_02627 0.47 -0.1 2,772,431 + MPMX20_02627 0.49 -0.1
Or see this region's nucleotide sequence