Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02469 and MPMX20_02470 are separated by 12 nucleotides MPMX20_02470 and MPMX20_02471 overlap by 1 nucleotides MPMX20_02471 and MPMX20_02472 are separated by 54 nucleotides MPMX20_02472 and MPMX20_02473 are separated by 166 nucleotides
MPMX20_02469: MPMX20_02469 - Phage shock protein D, at 2,611,206 to 2,611,430
_02469
MPMX20_02470: MPMX20_02470 - Phage shock protein C, at 2,611,443 to 2,611,802
_02470
MPMX20_02471: MPMX20_02471 - Phage shock protein B, at 2,611,802 to 2,612,026
_02471
MPMX20_02472: MPMX20_02472 - Phage shock protein A, at 2,612,081 to 2,612,749
_02472
MPMX20_02473: MPMX20_02473 - Psp operon transcriptional activator, at 2,612,916 to 2,613,893
_02473
Position (kb)
2612
2613 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.111 kb on + strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.119 kb on - strand at 2611.119 kb on - strand at 2611.124 kb on - strand at 2611.124 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.150 kb on - strand at 2611.163 kb on - strand at 2611.169 kb on - strand at 2611.169 kb on - strand at 2611.169 kb on - strand at 2611.169 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.187 kb on + strand at 2611.188 kb on + strand at 2611.188 kb on + strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.219 kb on - strand at 2611.224 kb on - strand at 2611.259 kb on - strand, within MPMX20_02469 at 2611.266 kb on - strand, within MPMX20_02469 at 2611.266 kb on - strand, within MPMX20_02469 at 2611.273 kb on + strand, within MPMX20_02469 at 2611.285 kb on - strand, within MPMX20_02469 at 2611.285 kb on - strand, within MPMX20_02469 at 2611.309 kb on + strand, within MPMX20_02469 at 2611.309 kb on - strand, within MPMX20_02469 at 2611.352 kb on - strand, within MPMX20_02469 at 2611.357 kb on + strand, within MPMX20_02469 at 2611.359 kb on - strand, within MPMX20_02469 at 2611.369 kb on - strand, within MPMX20_02469 at 2611.373 kb on - strand, within MPMX20_02469 at 2611.397 kb on - strand, within MPMX20_02469 at 2611.398 kb on - strand, within MPMX20_02469 at 2611.398 kb on - strand, within MPMX20_02469 at 2611.419 kb on + strand at 2611.440 kb on + strand at 2611.469 kb on + strand at 2611.469 kb on + strand at 2611.469 kb on + strand at 2611.477 kb on - strand at 2611.486 kb on - strand, within MPMX20_02470 at 2611.515 kb on + strand, within MPMX20_02470 at 2611.520 kb on + strand, within MPMX20_02470 at 2611.523 kb on - strand, within MPMX20_02470 at 2611.564 kb on - strand, within MPMX20_02470 at 2611.630 kb on + strand, within MPMX20_02470 at 2611.673 kb on + strand, within MPMX20_02470 at 2611.679 kb on + strand, within MPMX20_02470 at 2611.687 kb on - strand, within MPMX20_02470 at 2611.715 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.735 kb on - strand, within MPMX20_02470 at 2611.735 kb on - strand, within MPMX20_02470 at 2611.755 kb on + strand, within MPMX20_02470 at 2611.787 kb on + strand at 2611.891 kb on + strand, within MPMX20_02471 at 2611.894 kb on + strand, within MPMX20_02471 at 2611.899 kb on - strand, within MPMX20_02471 at 2611.914 kb on - strand, within MPMX20_02471 at 2611.940 kb on - strand, within MPMX20_02471 at 2611.947 kb on + strand, within MPMX20_02471 at 2612.024 kb on + strand at 2612.026 kb on + strand at 2612.034 kb on - strand at 2612.038 kb on + strand at 2612.040 kb on + strand at 2612.046 kb on - strand at 2612.154 kb on - strand, within MPMX20_02472 at 2612.164 kb on + strand, within MPMX20_02472 at 2612.206 kb on - strand, within MPMX20_02472 at 2612.241 kb on - strand, within MPMX20_02472 at 2612.269 kb on + strand, within MPMX20_02472 at 2612.269 kb on + strand, within MPMX20_02472 at 2612.484 kb on + strand, within MPMX20_02472 at 2612.484 kb on + strand, within MPMX20_02472 at 2612.492 kb on - strand, within MPMX20_02472 at 2612.513 kb on - strand, within MPMX20_02472 at 2612.549 kb on - strand, within MPMX20_02472 at 2612.558 kb on + strand, within MPMX20_02472 at 2612.561 kb on - strand, within MPMX20_02472 at 2612.563 kb on + strand, within MPMX20_02472 at 2612.571 kb on - strand, within MPMX20_02472 at 2612.698 kb on - strand at 2612.698 kb on - strand at 2612.968 kb on + strand at 2612.986 kb on - strand at 2613.090 kb on - strand, within MPMX20_02473 at 2613.099 kb on + strand, within MPMX20_02473 at 2613.099 kb on + strand, within MPMX20_02473 at 2613.109 kb on - strand, within MPMX20_02473 at 2613.153 kb on + strand, within MPMX20_02473 at 2613.342 kb on + strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.377 kb on + strand, within MPMX20_02473 at 2613.435 kb on + strand, within MPMX20_02473 at 2613.443 kb on - strand, within MPMX20_02473 at 2613.483 kb on + strand, within MPMX20_02473 at 2613.511 kb on - strand, within MPMX20_02473 at 2613.558 kb on - strand, within MPMX20_02473 at 2613.619 kb on + strand, within MPMX20_02473 at 2613.624 kb on + strand, within MPMX20_02473 at 2613.626 kb on - strand, within MPMX20_02473 at 2613.662 kb on + strand, within MPMX20_02473 at 2613.662 kb on + strand, within MPMX20_02473 at 2613.723 kb on - strand, within MPMX20_02473 at 2613.724 kb on - strand, within MPMX20_02473 at 2613.724 kb on - strand, within MPMX20_02473 at 2613.727 kb on + strand, within MPMX20_02473
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 2,611,104 - -0.5 2,611,104 - +0.4 2,611,104 - +1.4 2,611,104 - +0.6 2,611,104 - +1.4 2,611,104 - -1.1 2,611,104 - +0.9 2,611,104 - +0.4 2,611,104 - +0.1 2,611,104 - -0.6 2,611,104 - -1.2 2,611,111 + +0.9 2,611,114 - -0.4 2,611,114 - -1.2 2,611,114 - +5.9 2,611,114 - +0.1 2,611,114 - +1.1 2,611,114 - -0.1 2,611,114 - +1.4 2,611,114 - +1.9 2,611,114 - -0.9 2,611,114 - +0.9 2,611,114 - +0.4 2,611,114 - +0.1 2,611,114 - +0.4 2,611,114 - -2.3 2,611,114 - -2.4 2,611,114 - +0.1 2,611,114 - -2.3 2,611,119 - +0.6 2,611,119 - -0.1 2,611,124 - +1.4 2,611,124 - -0.1 2,611,126 - +0.8 2,611,126 - -0.6 2,611,126 - +0.6 2,611,126 - -1.3 2,611,126 - -0.5 2,611,126 - -0.6 2,611,126 - -0.8 2,611,126 - +1.8 2,611,126 - -0.8 2,611,126 - -3.6 2,611,126 - +0.1 2,611,126 - -1.5 2,611,126 - -1.3 2,611,126 - +1.9 2,611,126 - -0.4 2,611,126 - -2.5 2,611,126 - -0.8 2,611,126 - +0.6 2,611,126 - -0.4 2,611,126 - +0.1 2,611,126 - -0.9 2,611,126 - -0.0 2,611,126 - +0.0 2,611,126 - -0.8 2,611,126 - -0.8 2,611,126 - -0.2 2,611,126 - -0.4 2,611,126 - -0.2 2,611,126 - -0.6 2,611,126 - -1.6 2,611,126 - -0.5 2,611,126 - +1.4 2,611,126 - -0.8 2,611,126 - +2.9 2,611,126 - +1.4 2,611,126 - +0.1 2,611,126 - +0.4 2,611,150 - -2.4 2,611,163 - -1.8 2,611,169 - +0.7 2,611,169 - -1.2 2,611,169 - -0.9 2,611,169 - -0.1 2,611,174 - -2.1 2,611,174 - +0.1 2,611,174 - -2.4 2,611,174 - +0.7 2,611,174 - +1.2 2,611,174 - -0.2 2,611,174 - +2.9 2,611,174 - -3.7 2,611,187 + +0.1 2,611,188 + -0.6 2,611,188 + +0.5 2,611,195 - -0.1 2,611,195 - -0.6 2,611,195 - +0.4 2,611,195 - +0.4 2,611,195 - +0.1 2,611,195 - +0.2 2,611,195 - +1.3 2,611,195 - -1.6 2,611,195 - +0.0 2,611,195 - +0.9 2,611,195 - +0.1 2,611,195 - -1.6 2,611,195 - -0.8 2,611,195 - -1.2 2,611,195 - +0.0 2,611,195 - +0.2 2,611,195 - +1.9 2,611,195 - +0.2 2,611,195 - -1.6 2,611,195 - -0.6 2,611,195 - -0.6 2,611,195 - +1.1 2,611,195 - -1.1 2,611,196 - +1.8 2,611,196 - -1.0 2,611,196 - +0.6 2,611,196 - +1.2 2,611,196 - -0.2 2,611,196 - +1.1 2,611,196 - -1.1 2,611,196 - -0.4 2,611,196 - -0.2 2,611,196 - -1.5 2,611,196 - -0.6 2,611,219 - -1.0 2,611,224 - -0.5 2,611,259 - MPMX20_02469 0.24 +2.2 2,611,266 - MPMX20_02469 0.27 +0.3 2,611,266 - MPMX20_02469 0.27 -0.9 2,611,273 + MPMX20_02469 0.30 -0.1 2,611,285 - MPMX20_02469 0.35 -2.2 2,611,285 - MPMX20_02469 0.35 +2.6 2,611,309 + MPMX20_02469 0.46 +0.6 2,611,309 - MPMX20_02469 0.46 +1.5 2,611,352 - MPMX20_02469 0.65 +0.2 2,611,357 + MPMX20_02469 0.67 -0.4 2,611,359 - MPMX20_02469 0.68 -0.1 2,611,369 - MPMX20_02469 0.72 +0.6 2,611,373 - MPMX20_02469 0.74 +0.1 2,611,397 - MPMX20_02469 0.85 -1.7 2,611,398 - MPMX20_02469 0.85 +0.9 2,611,398 - MPMX20_02469 0.85 -0.1 2,611,419 + +0.4 2,611,440 + -1.6 2,611,469 + +2.4 2,611,469 + +1.4 2,611,469 + -2.1 2,611,477 - +0.6 2,611,486 - MPMX20_02470 0.12 -1.7 2,611,515 + MPMX20_02470 0.20 -1.5 2,611,520 + MPMX20_02470 0.21 +0.9 2,611,523 - MPMX20_02470 0.22 -0.4 2,611,564 - MPMX20_02470 0.34 +1.7 2,611,630 + MPMX20_02470 0.52 -1.5 2,611,673 + MPMX20_02470 0.64 +1.6 2,611,679 + MPMX20_02470 0.66 -2.8 2,611,687 - MPMX20_02470 0.68 +0.1 2,611,715 + MPMX20_02470 0.76 -0.1 2,611,727 + MPMX20_02470 0.79 -0.3 2,611,727 + MPMX20_02470 0.79 +0.6 2,611,727 + MPMX20_02470 0.79 +1.1 2,611,727 + MPMX20_02470 0.79 -1.0 2,611,735 - MPMX20_02470 0.81 +0.3 2,611,735 - MPMX20_02470 0.81 +0.2 2,611,755 + MPMX20_02470 0.87 -1.0 2,611,787 + -2.6 2,611,891 + MPMX20_02471 0.40 -2.0 2,611,894 + MPMX20_02471 0.41 +0.4 2,611,899 - MPMX20_02471 0.43 -2.4 2,611,914 - MPMX20_02471 0.50 -0.2 2,611,940 - MPMX20_02471 0.61 -0.9 2,611,947 + MPMX20_02471 0.64 -1.0 2,612,024 + -0.1 2,612,026 + -1.6 2,612,034 - -1.9 2,612,038 + +0.9 2,612,040 + -1.0 2,612,046 - -3.0 2,612,154 - MPMX20_02472 0.11 -0.7 2,612,164 + MPMX20_02472 0.12 -0.3 2,612,206 - MPMX20_02472 0.19 -1.5 2,612,241 - MPMX20_02472 0.24 -2.3 2,612,269 + MPMX20_02472 0.28 +0.6 2,612,269 + MPMX20_02472 0.28 +0.8 2,612,484 + MPMX20_02472 0.60 +1.9 2,612,484 + MPMX20_02472 0.60 -0.5 2,612,492 - MPMX20_02472 0.61 -2.7 2,612,513 - MPMX20_02472 0.65 -2.2 2,612,549 - MPMX20_02472 0.70 -1.9 2,612,558 + MPMX20_02472 0.71 +1.4 2,612,561 - MPMX20_02472 0.72 -2.0 2,612,563 + MPMX20_02472 0.72 -0.8 2,612,571 - MPMX20_02472 0.73 -2.4 2,612,698 - -2.3 2,612,698 - -1.1 2,612,968 + -1.4 2,612,986 - -1.9 2,613,090 - MPMX20_02473 0.18 -1.0 2,613,099 + MPMX20_02473 0.19 -1.5 2,613,099 + MPMX20_02473 0.19 -1.9 2,613,109 - MPMX20_02473 0.20 -1.6 2,613,153 + MPMX20_02473 0.24 -0.6 2,613,342 + MPMX20_02473 0.44 +0.3 2,613,350 - MPMX20_02473 0.44 -1.2 2,613,350 - MPMX20_02473 0.44 -2.1 2,613,350 - MPMX20_02473 0.44 -0.8 2,613,377 + MPMX20_02473 0.47 -0.1 2,613,435 + MPMX20_02473 0.53 +2.3 2,613,443 - MPMX20_02473 0.54 -0.5 2,613,483 + MPMX20_02473 0.58 +0.9 2,613,511 - MPMX20_02473 0.61 -1.6 2,613,558 - MPMX20_02473 0.66 +1.0 2,613,619 + MPMX20_02473 0.72 +1.8 2,613,624 + MPMX20_02473 0.72 -0.5 2,613,626 - MPMX20_02473 0.73 +2.9 2,613,662 + MPMX20_02473 0.76 -0.2 2,613,662 + MPMX20_02473 0.76 +0.5 2,613,723 - MPMX20_02473 0.83 -0.4 2,613,724 - MPMX20_02473 0.83 -1.6 2,613,724 - MPMX20_02473 0.83 -0.1 2,613,727 + MPMX20_02473 0.83 +1.4
Or see this region's nucleotide sequence