Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01918 and MPMX20_01919 are separated by 76 nucleotides MPMX20_01919 and MPMX20_01920 are separated by 166 nucleotides
MPMX20_01918: MPMX20_01918 - Hemin receptor, at 2,008,709 to 2,010,694
_01918
MPMX20_01919: MPMX20_01919 - putative protein YdiE, at 2,010,771 to 2,010,959
_01919
MPMX20_01920: MPMX20_01920 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive, at 2,011,126 to 2,012,172
_01920
Position (kb)
2010
2011 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2009.788 kb on + strand, within MPMX20_01918 at 2009.788 kb on + strand, within MPMX20_01918 at 2009.796 kb on - strand, within MPMX20_01918 at 2009.836 kb on + strand, within MPMX20_01918 at 2010.143 kb on - strand, within MPMX20_01918 at 2010.156 kb on - strand, within MPMX20_01918 at 2010.265 kb on - strand, within MPMX20_01918 at 2010.278 kb on + strand, within MPMX20_01918 at 2010.278 kb on + strand, within MPMX20_01918 at 2010.286 kb on - strand, within MPMX20_01918 at 2010.286 kb on - strand, within MPMX20_01918 at 2010.292 kb on - strand, within MPMX20_01918 at 2010.320 kb on - strand, within MPMX20_01918 at 2010.327 kb on + strand, within MPMX20_01918 at 2010.330 kb on - strand, within MPMX20_01918 at 2010.342 kb on + strand, within MPMX20_01918 at 2010.342 kb on + strand, within MPMX20_01918 at 2010.414 kb on - strand, within MPMX20_01918 at 2010.474 kb on - strand, within MPMX20_01918 at 2010.474 kb on - strand, within MPMX20_01918 at 2010.474 kb on - strand, within MPMX20_01918 at 2010.556 kb on - strand at 2010.564 kb on - strand at 2010.649 kb on + strand at 2010.739 kb on + strand at 2010.836 kb on - strand, within MPMX20_01919 at 2010.915 kb on - strand, within MPMX20_01919 at 2010.921 kb on - strand, within MPMX20_01919 at 2010.939 kb on + strand, within MPMX20_01919 at 2011.053 kb on + strand at 2011.086 kb on + strand at 2011.110 kb on + strand at 2011.110 kb on + strand at 2011.118 kb on - strand at 2011.178 kb on - strand at 2011.179 kb on + strand at 2011.186 kb on + strand at 2011.199 kb on - strand at 2011.210 kb on - strand at 2011.210 kb on - strand at 2011.213 kb on + strand at 2011.213 kb on + strand at 2011.220 kb on + strand at 2011.228 kb on - strand at 2011.229 kb on - strand at 2011.260 kb on + strand, within MPMX20_01920 at 2011.293 kb on + strand, within MPMX20_01920 at 2011.343 kb on - strand, within MPMX20_01920 at 2011.427 kb on - strand, within MPMX20_01920 at 2011.444 kb on - strand, within MPMX20_01920 at 2011.444 kb on - strand, within MPMX20_01920 at 2011.532 kb on + strand, within MPMX20_01920 at 2011.532 kb on + strand, within MPMX20_01920 at 2011.584 kb on - strand, within MPMX20_01920 at 2011.642 kb on + strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.649 kb on - strand, within MPMX20_01920 at 2011.703 kb on - strand, within MPMX20_01920 at 2011.715 kb on + strand, within MPMX20_01920 at 2011.803 kb on + strand, within MPMX20_01920 at 2011.810 kb on - strand, within MPMX20_01920 at 2011.823 kb on - strand, within MPMX20_01920 at 2011.834 kb on + strand, within MPMX20_01920 at 2011.862 kb on + strand, within MPMX20_01920 at 2011.951 kb on - strand, within MPMX20_01920
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 2,009,788 + MPMX20_01918 0.54 -3.6 2,009,788 + MPMX20_01918 0.54 -1.5 2,009,796 - MPMX20_01918 0.55 -2.3 2,009,836 + MPMX20_01918 0.57 +1.7 2,010,143 - MPMX20_01918 0.72 -0.4 2,010,156 - MPMX20_01918 0.73 +0.0 2,010,265 - MPMX20_01918 0.78 +0.0 2,010,278 + MPMX20_01918 0.79 -0.3 2,010,278 + MPMX20_01918 0.79 +0.7 2,010,286 - MPMX20_01918 0.79 +0.7 2,010,286 - MPMX20_01918 0.79 -0.0 2,010,292 - MPMX20_01918 0.80 -0.8 2,010,320 - MPMX20_01918 0.81 -0.9 2,010,327 + MPMX20_01918 0.81 -0.6 2,010,330 - MPMX20_01918 0.82 -0.7 2,010,342 + MPMX20_01918 0.82 -1.6 2,010,342 + MPMX20_01918 0.82 +0.2 2,010,414 - MPMX20_01918 0.86 -0.2 2,010,474 - MPMX20_01918 0.89 -1.4 2,010,474 - MPMX20_01918 0.89 -1.8 2,010,474 - MPMX20_01918 0.89 +0.7 2,010,556 - -0.2 2,010,564 - -0.2 2,010,649 + -0.4 2,010,739 + -0.4 2,010,836 - MPMX20_01919 0.34 -1.6 2,010,915 - MPMX20_01919 0.76 -1.1 2,010,921 - MPMX20_01919 0.79 -0.3 2,010,939 + MPMX20_01919 0.89 -1.3 2,011,053 + -1.5 2,011,086 + -0.4 2,011,110 + -0.7 2,011,110 + +3.2 2,011,118 - +0.4 2,011,178 - -1.7 2,011,179 + -2.5 2,011,186 + +1.2 2,011,199 - -1.1 2,011,210 - +1.0 2,011,210 - +0.3 2,011,213 + -0.8 2,011,213 + +0.0 2,011,220 + -2.7 2,011,228 - +0.3 2,011,229 - +1.4 2,011,260 + MPMX20_01920 0.13 +3.0 2,011,293 + MPMX20_01920 0.16 -1.2 2,011,343 - MPMX20_01920 0.21 +1.0 2,011,427 - MPMX20_01920 0.29 +0.3 2,011,444 - MPMX20_01920 0.30 -1.9 2,011,444 - MPMX20_01920 0.30 +0.1 2,011,532 + MPMX20_01920 0.39 +1.4 2,011,532 + MPMX20_01920 0.39 -1.6 2,011,584 - MPMX20_01920 0.44 -1.4 2,011,642 + MPMX20_01920 0.49 +0.0 2,011,644 - MPMX20_01920 0.49 -0.4 2,011,644 - MPMX20_01920 0.49 -1.4 2,011,644 - MPMX20_01920 0.49 -0.7 2,011,644 - MPMX20_01920 0.49 +1.1 2,011,649 - MPMX20_01920 0.50 -0.4 2,011,703 - MPMX20_01920 0.55 +0.4 2,011,715 + MPMX20_01920 0.56 -0.1 2,011,803 + MPMX20_01920 0.65 -1.8 2,011,810 - MPMX20_01920 0.65 +0.1 2,011,823 - MPMX20_01920 0.67 -1.1 2,011,834 + MPMX20_01920 0.68 -0.2 2,011,862 + MPMX20_01920 0.70 -2.8 2,011,951 - MPMX20_01920 0.79 -1.5
Or see this region's nucleotide sequence