Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01795

Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01794 and MPMX20_01795 are separated by 149 nucleotidesMPMX20_01795 and MPMX20_01796 are separated by 148 nucleotides MPMX20_01794: MPMX20_01794 - putative L,D-transpeptidase YcfS, at 1,884,338 to 1,885,303 _01794 MPMX20_01795: MPMX20_01795 - Transcription-repair-coupling factor, at 1,885,453 to 1,888,899 _01795 MPMX20_01796: MPMX20_01796 - Inner membrane protein YcfT, at 1,889,048 to 1,890,121 _01796 Position (kb) 1885 1886 1887 1888 1889Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1884.457 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.556 kb on + strand, within MPMX20_01794at 1884.572 kb on - strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.761 kb on + strand, within MPMX20_01794at 1884.769 kb on - strand, within MPMX20_01794at 1884.798 kb on - strand, within MPMX20_01794at 1884.829 kb on - strand, within MPMX20_01794at 1884.837 kb on + strand, within MPMX20_01794at 1884.854 kb on - strand, within MPMX20_01794at 1884.878 kb on - strand, within MPMX20_01794at 1884.878 kb on - strand, within MPMX20_01794at 1884.880 kb on + strand, within MPMX20_01794at 1884.888 kb on - strand, within MPMX20_01794at 1884.892 kb on + strand, within MPMX20_01794at 1884.900 kb on + strand, within MPMX20_01794at 1884.905 kb on + strand, within MPMX20_01794at 1884.910 kb on + strand, within MPMX20_01794at 1884.918 kb on - strand, within MPMX20_01794at 1884.918 kb on - strand, within MPMX20_01794at 1884.933 kb on - strand, within MPMX20_01794at 1884.962 kb on - strand, within MPMX20_01794at 1884.984 kb on - strand, within MPMX20_01794at 1884.989 kb on - strand, within MPMX20_01794at 1885.037 kb on + strand, within MPMX20_01794at 1885.045 kb on - strand, within MPMX20_01794at 1885.080 kb on + strand, within MPMX20_01794at 1885.082 kb on - strand, within MPMX20_01794at 1885.275 kb on - strandat 1885.275 kb on - strandat 1885.275 kb on - strandat 1885.470 kb on + strandat 1885.491 kb on + strandat 1885.660 kb on + strandat 1885.744 kb on - strandat 1885.833 kb on - strand, within MPMX20_01795at 1885.869 kb on + strand, within MPMX20_01795at 1885.898 kb on - strand, within MPMX20_01795at 1885.976 kb on - strand, within MPMX20_01795at 1885.976 kb on - strand, within MPMX20_01795at 1885.976 kb on - strand, within MPMX20_01795at 1886.016 kb on - strand, within MPMX20_01795at 1886.016 kb on - strand, within MPMX20_01795at 1886.046 kb on + strand, within MPMX20_01795at 1886.165 kb on + strand, within MPMX20_01795at 1886.171 kb on + strand, within MPMX20_01795at 1886.222 kb on + strand, within MPMX20_01795at 1886.302 kb on + strand, within MPMX20_01795at 1886.302 kb on + strand, within MPMX20_01795at 1886.447 kb on + strand, within MPMX20_01795at 1886.455 kb on - strand, within MPMX20_01795at 1886.464 kb on + strand, within MPMX20_01795at 1886.482 kb on - strand, within MPMX20_01795at 1886.496 kb on - strand, within MPMX20_01795at 1886.501 kb on - strand, within MPMX20_01795at 1886.583 kb on + strand, within MPMX20_01795at 1886.640 kb on + strand, within MPMX20_01795at 1886.682 kb on + strand, within MPMX20_01795at 1886.682 kb on + strand, within MPMX20_01795at 1886.694 kb on + strand, within MPMX20_01795at 1886.728 kb on + strand, within MPMX20_01795at 1886.728 kb on + strand, within MPMX20_01795at 1886.806 kb on - strand, within MPMX20_01795at 1886.806 kb on - strand, within MPMX20_01795at 1886.808 kb on + strand, within MPMX20_01795at 1886.854 kb on - strand, within MPMX20_01795at 1886.922 kb on + strand, within MPMX20_01795at 1886.930 kb on - strand, within MPMX20_01795at 1886.930 kb on - strand, within MPMX20_01795at 1886.930 kb on - strand, within MPMX20_01795at 1886.938 kb on - strand, within MPMX20_01795at 1887.025 kb on - strand, within MPMX20_01795at 1887.063 kb on + strand, within MPMX20_01795at 1887.085 kb on - strand, within MPMX20_01795at 1887.125 kb on + strand, within MPMX20_01795at 1887.133 kb on - strand, within MPMX20_01795at 1887.230 kb on + strand, within MPMX20_01795at 1887.238 kb on - strand, within MPMX20_01795at 1887.294 kb on - strand, within MPMX20_01795at 1887.296 kb on - strand, within MPMX20_01795at 1887.352 kb on - strand, within MPMX20_01795at 1887.408 kb on + strand, within MPMX20_01795at 1887.418 kb on - strand, within MPMX20_01795at 1887.426 kb on + strand, within MPMX20_01795at 1887.488 kb on - strand, within MPMX20_01795at 1887.601 kb on + strand, within MPMX20_01795at 1887.609 kb on + strand, within MPMX20_01795at 1887.609 kb on - strand, within MPMX20_01795at 1887.655 kb on - strand, within MPMX20_01795at 1887.688 kb on - strand, within MPMX20_01795at 1887.703 kb on + strand, within MPMX20_01795at 1887.716 kb on - strand, within MPMX20_01795at 1887.739 kb on + strand, within MPMX20_01795at 1887.747 kb on - strand, within MPMX20_01795at 1887.886 kb on - strand, within MPMX20_01795at 1887.922 kb on - strand, within MPMX20_01795at 1887.967 kb on + strand, within MPMX20_01795at 1887.987 kb on + strand, within MPMX20_01795at 1888.091 kb on + strand, within MPMX20_01795at 1888.091 kb on + strand, within MPMX20_01795at 1888.161 kb on + strand, within MPMX20_01795at 1888.328 kb on - strand, within MPMX20_01795at 1888.391 kb on - strand, within MPMX20_01795at 1888.462 kb on + strand, within MPMX20_01795at 1888.495 kb on + strand, within MPMX20_01795at 1888.538 kb on - strand, within MPMX20_01795at 1888.540 kb on - strand, within MPMX20_01795at 1888.557 kb on + strandat 1888.565 kb on - strandat 1888.565 kb on - strandat 1888.565 kb on - strandat 1888.626 kb on + strandat 1888.642 kb on + strandat 1888.653 kb on + strandat 1888.672 kb on - strandat 1888.782 kb on - strandat 1888.898 kb on - strandat 1888.906 kb on + strandat 1888.934 kb on + strandat 1888.942 kb on - strandat 1889.096 kb on - strandat 1889.100 kb on + strandat 1889.102 kb on + strandat 1889.118 kb on - strandat 1889.121 kb on + strandat 1889.123 kb on - strandat 1889.123 kb on - strandat 1889.131 kb on + strandat 1889.131 kb on + strandat 1889.139 kb on - strandat 1889.148 kb on + strandat 1889.153 kb on + strandat 1889.199 kb on + strand, within MPMX20_01796at 1889.202 kb on - strand, within MPMX20_01796at 1889.207 kb on - strand, within MPMX20_01796at 1889.220 kb on + strand, within MPMX20_01796at 1889.228 kb on - strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.253 kb on - strand, within MPMX20_01796at 1889.253 kb on - strand, within MPMX20_01796at 1889.293 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.342 kb on - strand, within MPMX20_01796at 1889.342 kb on - strand, within MPMX20_01796at 1889.342 kb on - strand, within MPMX20_01796at 1889.344 kb on + strand, within MPMX20_01796at 1889.458 kb on + strand, within MPMX20_01796at 1889.495 kb on + strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.563 kb on - strand, within MPMX20_01796at 1889.637 kb on - strand, within MPMX20_01796at 1889.646 kb on + strand, within MPMX20_01796at 1889.654 kb on - strand, within MPMX20_01796at 1889.664 kb on - strand, within MPMX20_01796at 1889.664 kb on - strand, within MPMX20_01796at 1889.664 kb on - strand, within MPMX20_01796at 1889.674 kb on + strand, within MPMX20_01796at 1889.795 kb on - strand, within MPMX20_01796at 1889.809 kb on + strand, within MPMX20_01796at 1889.839 kb on + strand, within MPMX20_01796at 1889.864 kb on - strand, within MPMX20_01796at 1889.877 kb on + strand, within MPMX20_01796

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
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1,884,457 + MPMX20_01794 0.12 -1.0
1,884,538 + MPMX20_01794 0.21 +1.3
1,884,538 + MPMX20_01794 0.21 -2.3
1,884,538 + MPMX20_01794 0.21 -0.8
1,884,538 + MPMX20_01794 0.21 -2.3
1,884,538 + MPMX20_01794 0.21 +0.3
1,884,538 + MPMX20_01794 0.21 -0.3
1,884,538 + MPMX20_01794 0.21 -2.1
1,884,538 + MPMX20_01794 0.21 -2.0
1,884,546 - MPMX20_01794 0.22 +2.9
1,884,546 - MPMX20_01794 0.22 +1.3
1,884,546 - MPMX20_01794 0.22 +0.1
1,884,546 - MPMX20_01794 0.22 -0.4
1,884,546 - MPMX20_01794 0.22 +0.2
1,884,546 - MPMX20_01794 0.22 +0.7
1,884,546 - MPMX20_01794 0.22 +1.9
1,884,546 - MPMX20_01794 0.22 -0.3
1,884,546 - MPMX20_01794 0.22 +2.2
1,884,546 - MPMX20_01794 0.22 +0.1
1,884,556 + MPMX20_01794 0.23 -0.7
1,884,572 - MPMX20_01794 0.24 -1.0
1,884,646 + MPMX20_01794 0.32 -0.7
1,884,646 + MPMX20_01794 0.32 +0.4
1,884,646 + MPMX20_01794 0.32 +0.9
1,884,761 + MPMX20_01794 0.44 +1.9
1,884,769 - MPMX20_01794 0.45 +2.9
1,884,798 - MPMX20_01794 0.48 -0.6
1,884,829 - MPMX20_01794 0.51 -2.0
1,884,837 + MPMX20_01794 0.52 -0.8
1,884,854 - MPMX20_01794 0.53 +0.4
1,884,878 - MPMX20_01794 0.56 -1.3
1,884,878 - MPMX20_01794 0.56 -1.3
1,884,880 + MPMX20_01794 0.56 -4.0
1,884,888 - MPMX20_01794 0.57 +0.2
1,884,892 + MPMX20_01794 0.57 -0.7
1,884,900 + MPMX20_01794 0.58 -0.8
1,884,905 + MPMX20_01794 0.59 -0.6
1,884,910 + MPMX20_01794 0.59 -1.0
1,884,918 - MPMX20_01794 0.60 -1.7
1,884,918 - MPMX20_01794 0.60 -0.1
1,884,933 - MPMX20_01794 0.62 -1.8
1,884,962 - MPMX20_01794 0.65 -0.7
1,884,984 - MPMX20_01794 0.67 -1.2
1,884,989 - MPMX20_01794 0.67 -1.1
1,885,037 + MPMX20_01794 0.72 -1.8
1,885,045 - MPMX20_01794 0.73 +0.3
1,885,080 + MPMX20_01794 0.77 +0.1
1,885,082 - MPMX20_01794 0.77 +0.4
1,885,275 - -1.2
1,885,275 - -0.4
1,885,275 - -0.3
1,885,470 + -0.5
1,885,491 + +3.7
1,885,660 + -1.2
1,885,744 - +2.7
1,885,833 - MPMX20_01795 0.11 +2.0
1,885,869 + MPMX20_01795 0.12 +3.5
1,885,898 - MPMX20_01795 0.13 -0.3
1,885,976 - MPMX20_01795 0.15 +5.5
1,885,976 - MPMX20_01795 0.15 +3.9
1,885,976 - MPMX20_01795 0.15 +2.6
1,886,016 - MPMX20_01795 0.16 -1.3
1,886,016 - MPMX20_01795 0.16 +1.7
1,886,046 + MPMX20_01795 0.17 +4.0
1,886,165 + MPMX20_01795 0.21 +5.4
1,886,171 + MPMX20_01795 0.21 +3.7
1,886,222 + MPMX20_01795 0.22 +2.4
1,886,302 + MPMX20_01795 0.25 +2.6
1,886,302 + MPMX20_01795 0.25 +3.4
1,886,447 + MPMX20_01795 0.29 +1.6
1,886,455 - MPMX20_01795 0.29 +2.3
1,886,464 + MPMX20_01795 0.29 +2.5
1,886,482 - MPMX20_01795 0.30 +3.1
1,886,496 - MPMX20_01795 0.30 +1.9
1,886,501 - MPMX20_01795 0.30 +2.4
1,886,583 + MPMX20_01795 0.33 +4.7
1,886,640 + MPMX20_01795 0.34 +1.8
1,886,682 + MPMX20_01795 0.36 +1.3
1,886,682 + MPMX20_01795 0.36 +2.7
1,886,694 + MPMX20_01795 0.36 +2.3
1,886,728 + MPMX20_01795 0.37 +3.2
1,886,728 + MPMX20_01795 0.37 +2.8
1,886,806 - MPMX20_01795 0.39 +2.8
1,886,806 - MPMX20_01795 0.39 +2.8
1,886,808 + MPMX20_01795 0.39 +1.8
1,886,854 - MPMX20_01795 0.41 +3.4
1,886,922 + MPMX20_01795 0.43 +2.9
1,886,930 - MPMX20_01795 0.43 -0.1
1,886,930 - MPMX20_01795 0.43 +1.7
1,886,930 - MPMX20_01795 0.43 +4.1
1,886,938 - MPMX20_01795 0.43 +4.8
1,887,025 - MPMX20_01795 0.46 +3.5
1,887,063 + MPMX20_01795 0.47 +4.2
1,887,085 - MPMX20_01795 0.47 -0.5
1,887,125 + MPMX20_01795 0.49 +1.3
1,887,133 - MPMX20_01795 0.49 +4.2
1,887,230 + MPMX20_01795 0.52 +4.3
1,887,238 - MPMX20_01795 0.52 +2.9
1,887,294 - MPMX20_01795 0.53 +3.5
1,887,296 - MPMX20_01795 0.53 +3.2
1,887,352 - MPMX20_01795 0.55 +2.5
1,887,408 + MPMX20_01795 0.57 +4.7
1,887,418 - MPMX20_01795 0.57 +0.9
1,887,426 + MPMX20_01795 0.57 +3.5
1,887,488 - MPMX20_01795 0.59 +3.0
1,887,601 + MPMX20_01795 0.62 +2.3
1,887,609 + MPMX20_01795 0.63 +3.6
1,887,609 - MPMX20_01795 0.63 +2.9
1,887,655 - MPMX20_01795 0.64 +4.1
1,887,688 - MPMX20_01795 0.65 +0.5
1,887,703 + MPMX20_01795 0.65 +3.7
1,887,716 - MPMX20_01795 0.66 +2.1
1,887,739 + MPMX20_01795 0.66 +2.5
1,887,747 - MPMX20_01795 0.67 +2.1
1,887,886 - MPMX20_01795 0.71 -1.4
1,887,922 - MPMX20_01795 0.72 +0.2
1,887,967 + MPMX20_01795 0.73 -1.3
1,887,987 + MPMX20_01795 0.74 +4.1
1,888,091 + MPMX20_01795 0.77 +2.9
1,888,091 + MPMX20_01795 0.77 +3.7
1,888,161 + MPMX20_01795 0.79 +3.1
1,888,328 - MPMX20_01795 0.83 +0.7
1,888,391 - MPMX20_01795 0.85 +2.8
1,888,462 + MPMX20_01795 0.87 +3.8
1,888,495 + MPMX20_01795 0.88 +3.5
1,888,538 - MPMX20_01795 0.89 +1.8
1,888,540 - MPMX20_01795 0.90 +1.4
1,888,557 + +0.9
1,888,565 - +1.5
1,888,565 - +2.7
1,888,565 - +3.7
1,888,626 + +1.7
1,888,642 + +0.1
1,888,653 + +1.7
1,888,672 - +5.6
1,888,782 - +3.4
1,888,898 - +4.1
1,888,906 + +1.8
1,888,934 + +2.6
1,888,942 - -0.6
1,889,096 - -0.9
1,889,100 + -2.0
1,889,102 + +1.3
1,889,118 - -1.1
1,889,121 + +0.1
1,889,123 - -1.1
1,889,123 - +0.5
1,889,131 + -1.7
1,889,131 + -1.1
1,889,139 - +0.0
1,889,148 + -1.7
1,889,153 + -0.3
1,889,199 + MPMX20_01796 0.14 -0.8
1,889,202 - MPMX20_01796 0.14 -0.7
1,889,207 - MPMX20_01796 0.15 -0.7
1,889,220 + MPMX20_01796 0.16 +0.4
1,889,228 - MPMX20_01796 0.17 +0.8
1,889,245 + MPMX20_01796 0.18 +0.3
1,889,245 + MPMX20_01796 0.18 +0.7
1,889,245 + MPMX20_01796 0.18 -1.1
1,889,245 + MPMX20_01796 0.18 -0.1
1,889,245 + MPMX20_01796 0.18 -2.0
1,889,245 + MPMX20_01796 0.18 -1.0
1,889,253 - MPMX20_01796 0.19 -1.4
1,889,253 - MPMX20_01796 0.19 -0.4
1,889,293 + MPMX20_01796 0.23 -1.1
1,889,334 + MPMX20_01796 0.27 -0.3
1,889,334 + MPMX20_01796 0.27 -0.0
1,889,334 + MPMX20_01796 0.27 -0.7
1,889,334 + MPMX20_01796 0.27 +2.9
1,889,342 - MPMX20_01796 0.27 +0.9
1,889,342 - MPMX20_01796 0.27 -0.3
1,889,342 - MPMX20_01796 0.27 -1.2
1,889,344 + MPMX20_01796 0.28 -0.9
1,889,458 + MPMX20_01796 0.38 +0.1
1,889,495 + MPMX20_01796 0.42 -0.3
1,889,513 - MPMX20_01796 0.43 -0.7
1,889,513 - MPMX20_01796 0.43 +0.7
1,889,513 - MPMX20_01796 0.43 +0.9
1,889,513 - MPMX20_01796 0.43 +0.5
1,889,563 - MPMX20_01796 0.48 -0.9
1,889,637 - MPMX20_01796 0.55 -0.8
1,889,646 + MPMX20_01796 0.56 +1.3
1,889,654 - MPMX20_01796 0.56 +0.5
1,889,664 - MPMX20_01796 0.57 -1.7
1,889,664 - MPMX20_01796 0.57 +0.7
1,889,664 - MPMX20_01796 0.57 +1.3
1,889,674 + MPMX20_01796 0.58 +2.1
1,889,795 - MPMX20_01796 0.70 -0.3
1,889,809 + MPMX20_01796 0.71 +0.4
1,889,839 + MPMX20_01796 0.74 +0.7
1,889,864 - MPMX20_01796 0.76 -1.1
1,889,877 + MPMX20_01796 0.77 -0.7

Or see this region's nucleotide sequence