Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01788 and MPMX20_01789 are separated by 34 nucleotides MPMX20_01789 and MPMX20_01790 are separated by 238 nucleotides MPMX20_01790 and MPMX20_01791 are separated by 192 nucleotides MPMX20_01791 and MPMX20_01792 are separated by 60 nucleotides
MPMX20_01788: MPMX20_01788 - Beta-hexosaminidase, at 1,879,183 to 1,880,208
_01788
MPMX20_01789: MPMX20_01789 - hypothetical protein, at 1,880,243 to 1,880,785
_01789
MPMX20_01790: MPMX20_01790 - NADH dehydrogenase, at 1,881,024 to 1,882,328
_01790
MPMX20_01791: MPMX20_01791 - hypothetical protein, at 1,882,521 to 1,883,060
_01791
MPMX20_01792: MPMX20_01792 - HTH-type transcriptional repressor ComR, at 1,883,121 to 1,883,756
_01792
Position (kb)
1881
1882
1883 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1880.084 kb on - strand, within MPMX20_01788 at 1880.160 kb on + strand at 1880.168 kb on - strand at 1880.199 kb on - strand at 1880.203 kb on + strand at 1880.211 kb on - strand at 1880.275 kb on - strand at 1880.285 kb on - strand at 1880.380 kb on + strand, within MPMX20_01789 at 1880.431 kb on + strand, within MPMX20_01789 at 1880.439 kb on - strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.455 kb on + strand, within MPMX20_01789 at 1880.458 kb on - strand, within MPMX20_01789 at 1880.460 kb on + strand, within MPMX20_01789 at 1880.463 kb on - strand, within MPMX20_01789 at 1880.508 kb on + strand, within MPMX20_01789 at 1880.533 kb on - strand, within MPMX20_01789 at 1880.553 kb on + strand, within MPMX20_01789 at 1880.645 kb on + strand, within MPMX20_01789 at 1880.659 kb on - strand, within MPMX20_01789 at 1880.784 kb on + strand at 1880.792 kb on + strand at 1881.082 kb on + strand at 1881.090 kb on - strand at 1881.397 kb on - strand, within MPMX20_01790 at 1881.405 kb on + strand, within MPMX20_01790 at 1881.434 kb on - strand, within MPMX20_01790 at 1881.512 kb on + strand, within MPMX20_01790 at 1881.590 kb on + strand, within MPMX20_01790 at 1881.598 kb on - strand, within MPMX20_01790 at 1881.598 kb on - strand, within MPMX20_01790 at 1881.608 kb on - strand, within MPMX20_01790 at 1881.815 kb on + strand, within MPMX20_01790 at 1881.815 kb on + strand, within MPMX20_01790 at 1881.815 kb on + strand, within MPMX20_01790 at 1881.815 kb on + strand, within MPMX20_01790 at 1881.815 kb on + strand, within MPMX20_01790 at 1882.039 kb on + strand, within MPMX20_01790 at 1882.039 kb on + strand, within MPMX20_01790 at 1882.067 kb on + strand, within MPMX20_01790 at 1882.067 kb on + strand, within MPMX20_01790 at 1882.067 kb on + strand, within MPMX20_01790 at 1882.067 kb on + strand, within MPMX20_01790 at 1882.067 kb on + strand, within MPMX20_01790 at 1882.069 kb on + strand, within MPMX20_01790 at 1882.075 kb on - strand, within MPMX20_01790 at 1882.075 kb on - strand, within MPMX20_01790 at 1882.075 kb on - strand, within MPMX20_01790 at 1882.075 kb on - strand, within MPMX20_01790 at 1882.097 kb on - strand, within MPMX20_01790 at 1882.119 kb on - strand, within MPMX20_01790 at 1882.133 kb on + strand, within MPMX20_01790 at 1882.143 kb on + strand, within MPMX20_01790 at 1882.174 kb on + strand, within MPMX20_01790 at 1882.182 kb on - strand, within MPMX20_01790 at 1882.196 kb on - strand, within MPMX20_01790 at 1882.245 kb on - strand at 1882.250 kb on - strand at 1882.264 kb on - strand at 1882.320 kb on - strand at 1882.417 kb on + strand at 1882.628 kb on + strand, within MPMX20_01791 at 1882.628 kb on + strand, within MPMX20_01791 at 1882.636 kb on + strand, within MPMX20_01791 at 1882.636 kb on - strand, within MPMX20_01791 at 1882.738 kb on + strand, within MPMX20_01791 at 1882.738 kb on + strand, within MPMX20_01791 at 1882.746 kb on - strand, within MPMX20_01791 at 1882.781 kb on + strand, within MPMX20_01791 at 1882.829 kb on + strand, within MPMX20_01791 at 1882.849 kb on + strand, within MPMX20_01791 at 1882.879 kb on - strand, within MPMX20_01791 at 1882.896 kb on + strand, within MPMX20_01791 at 1882.901 kb on - strand, within MPMX20_01791 at 1883.000 kb on - strand, within MPMX20_01791 at 1883.016 kb on - strand at 1883.092 kb on + strand at 1883.143 kb on - strand at 1883.143 kb on - strand at 1883.143 kb on - strand at 1883.147 kb on + strand at 1883.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 1,880,084 - MPMX20_01788 0.88 -1.0 1,880,160 + -1.7 1,880,168 - -1.3 1,880,199 - +1.9 1,880,203 + -0.5 1,880,211 - +1.7 1,880,275 - -0.1 1,880,285 - -0.3 1,880,380 + MPMX20_01789 0.25 +0.9 1,880,431 + MPMX20_01789 0.35 -0.3 1,880,439 - MPMX20_01789 0.36 -0.8 1,880,444 + MPMX20_01789 0.37 -1.7 1,880,444 + MPMX20_01789 0.37 +1.6 1,880,444 + MPMX20_01789 0.37 -1.3 1,880,444 + MPMX20_01789 0.37 -0.8 1,880,455 + MPMX20_01789 0.39 +1.3 1,880,458 - MPMX20_01789 0.40 -0.1 1,880,460 + MPMX20_01789 0.40 +1.6 1,880,463 - MPMX20_01789 0.41 +0.2 1,880,508 + MPMX20_01789 0.49 +0.1 1,880,533 - MPMX20_01789 0.53 +0.7 1,880,553 + MPMX20_01789 0.57 -0.5 1,880,645 + MPMX20_01789 0.74 -0.8 1,880,659 - MPMX20_01789 0.77 -0.1 1,880,784 + +2.9 1,880,792 + -1.5 1,881,082 + -2.3 1,881,090 - -0.9 1,881,397 - MPMX20_01790 0.29 +1.9 1,881,405 + MPMX20_01790 0.29 -1.6 1,881,434 - MPMX20_01790 0.31 +0.3 1,881,512 + MPMX20_01790 0.37 -1.1 1,881,590 + MPMX20_01790 0.43 -0.7 1,881,598 - MPMX20_01790 0.44 +2.2 1,881,598 - MPMX20_01790 0.44 -0.3 1,881,608 - MPMX20_01790 0.45 +1.3 1,881,815 + MPMX20_01790 0.61 +1.8 1,881,815 + MPMX20_01790 0.61 -0.9 1,881,815 + MPMX20_01790 0.61 -1.5 1,881,815 + MPMX20_01790 0.61 +1.9 1,881,815 + MPMX20_01790 0.61 -1.1 1,882,039 + MPMX20_01790 0.78 +0.6 1,882,039 + MPMX20_01790 0.78 +0.8 1,882,067 + MPMX20_01790 0.80 +0.2 1,882,067 + MPMX20_01790 0.80 -0.1 1,882,067 + MPMX20_01790 0.80 -1.9 1,882,067 + MPMX20_01790 0.80 +0.3 1,882,067 + MPMX20_01790 0.80 -1.1 1,882,069 + MPMX20_01790 0.80 -0.5 1,882,075 - MPMX20_01790 0.81 -1.9 1,882,075 - MPMX20_01790 0.81 +0.8 1,882,075 - MPMX20_01790 0.81 +0.9 1,882,075 - MPMX20_01790 0.81 +1.6 1,882,097 - MPMX20_01790 0.82 -1.5 1,882,119 - MPMX20_01790 0.84 +0.1 1,882,133 + MPMX20_01790 0.85 -1.9 1,882,143 + MPMX20_01790 0.86 +0.1 1,882,174 + MPMX20_01790 0.88 +1.3 1,882,182 - MPMX20_01790 0.89 -0.4 1,882,196 - MPMX20_01790 0.90 -0.8 1,882,245 - +1.9 1,882,250 - -0.3 1,882,264 - -0.7 1,882,320 - +0.9 1,882,417 + -0.4 1,882,628 + MPMX20_01791 0.20 +1.1 1,882,628 + MPMX20_01791 0.20 -2.4 1,882,636 + MPMX20_01791 0.21 -0.0 1,882,636 - MPMX20_01791 0.21 -0.9 1,882,738 + MPMX20_01791 0.40 -0.7 1,882,738 + MPMX20_01791 0.40 +0.3 1,882,746 - MPMX20_01791 0.42 -1.7 1,882,781 + MPMX20_01791 0.48 +0.1 1,882,829 + MPMX20_01791 0.57 +1.9 1,882,849 + MPMX20_01791 0.61 +0.7 1,882,879 - MPMX20_01791 0.66 +1.1 1,882,896 + MPMX20_01791 0.69 -0.8 1,882,901 - MPMX20_01791 0.70 +0.7 1,883,000 - MPMX20_01791 0.89 -0.6 1,883,016 - +0.4 1,883,092 + +1.0 1,883,143 - +0.3 1,883,143 - -0.9 1,883,143 - -0.0 1,883,147 + +1.2 1,883,162 + -0.4
Or see this region's nucleotide sequence