Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01365 and MPMX20_01366 overlap by 4 nucleotides MPMX20_01366 and MPMX20_01367 are separated by 3 nucleotides MPMX20_01367 and MPMX20_01368 are separated by 28 nucleotides
MPMX20_01365: MPMX20_01365 - Acyl-CoA thioester hydrolase YbgC, at 1,432,899 to 1,433,303
_01365
MPMX20_01366: MPMX20_01366 - Tol-Pal system protein TolQ, at 1,433,300 to 1,433,992
_01366
MPMX20_01367: MPMX20_01367 - Tol-Pal system protein TolR, at 1,433,996 to 1,434,424
_01367
MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742
_01368
Position (kb)
1433
1434
1435 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1433.008 kb on + strand, within MPMX20_01365 at 1433.045 kb on + strand, within MPMX20_01365 at 1433.053 kb on - strand, within MPMX20_01365 at 1433.064 kb on + strand, within MPMX20_01365 at 1433.161 kb on + strand, within MPMX20_01365 at 1433.213 kb on - strand, within MPMX20_01365 at 1433.236 kb on + strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.244 kb on - strand, within MPMX20_01365 at 1433.297 kb on + strand at 1433.483 kb on - strand, within MPMX20_01366 at 1433.483 kb on - strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.725 kb on + strand, within MPMX20_01366 at 1433.775 kb on - strand, within MPMX20_01366 at 1433.797 kb on - strand, within MPMX20_01366 at 1433.870 kb on + strand, within MPMX20_01366 at 1433.878 kb on - strand, within MPMX20_01366 at 1433.879 kb on + strand, within MPMX20_01366 at 1433.880 kb on + strand, within MPMX20_01366 at 1433.987 kb on + strand at 1433.995 kb on - strand at 1434.041 kb on - strand, within MPMX20_01367 at 1434.108 kb on + strand, within MPMX20_01367 at 1434.197 kb on - strand, within MPMX20_01367 at 1434.204 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.209 kb on + strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.217 kb on - strand, within MPMX20_01367 at 1434.250 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.265 kb on + strand, within MPMX20_01367 at 1434.287 kb on + strand, within MPMX20_01367 at 1434.370 kb on - strand, within MPMX20_01367 at 1434.490 kb on - strand at 1434.490 kb on - strand at 1434.539 kb on + strand at 1434.678 kb on - strand, within MPMX20_01368 at 1434.726 kb on - strand, within MPMX20_01368 at 1434.765 kb on - strand, within MPMX20_01368 at 1434.861 kb on + strand, within MPMX20_01368 at 1434.912 kb on + strand, within MPMX20_01368 at 1434.985 kb on - strand, within MPMX20_01368 at 1435.161 kb on + strand, within MPMX20_01368 at 1435.370 kb on - strand, within MPMX20_01368
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 1,433,008 + MPMX20_01365 0.27 -1.1 1,433,045 + MPMX20_01365 0.36 +0.2 1,433,053 - MPMX20_01365 0.38 -0.2 1,433,064 + MPMX20_01365 0.41 -2.2 1,433,161 + MPMX20_01365 0.65 -1.1 1,433,213 - MPMX20_01365 0.78 -1.3 1,433,236 + MPMX20_01365 0.83 -0.3 1,433,244 - MPMX20_01365 0.85 -1.6 1,433,244 - MPMX20_01365 0.85 +2.8 1,433,297 + -1.5 1,433,483 - MPMX20_01366 0.26 +0.0 1,433,483 - MPMX20_01366 0.26 +0.8 1,433,725 + MPMX20_01366 0.61 -0.5 1,433,725 + MPMX20_01366 0.61 +2.8 1,433,775 - MPMX20_01366 0.69 +0.0 1,433,797 - MPMX20_01366 0.72 +2.8 1,433,870 + MPMX20_01366 0.82 -2.0 1,433,878 - MPMX20_01366 0.83 -1.9 1,433,879 + MPMX20_01366 0.84 -0.3 1,433,880 + MPMX20_01366 0.84 -0.6 1,433,987 + -0.8 1,433,995 - -0.4 1,434,041 - MPMX20_01367 0.10 +0.2 1,434,108 + MPMX20_01367 0.26 +0.5 1,434,197 - MPMX20_01367 0.47 +0.1 1,434,204 + MPMX20_01367 0.48 -1.8 1,434,209 + MPMX20_01367 0.50 +0.8 1,434,209 + MPMX20_01367 0.50 -2.0 1,434,209 + MPMX20_01367 0.50 -1.3 1,434,209 + MPMX20_01367 0.50 -0.4 1,434,209 + MPMX20_01367 0.50 -1.1 1,434,217 - MPMX20_01367 0.52 -1.4 1,434,217 - MPMX20_01367 0.52 -0.4 1,434,217 - MPMX20_01367 0.52 +1.2 1,434,217 - MPMX20_01367 0.52 -1.6 1,434,217 - MPMX20_01367 0.52 -1.8 1,434,250 + MPMX20_01367 0.59 -0.5 1,434,265 + MPMX20_01367 0.63 -0.1 1,434,265 + MPMX20_01367 0.63 +1.8 1,434,287 + MPMX20_01367 0.68 -0.5 1,434,370 - MPMX20_01367 0.87 -0.2 1,434,490 - -1.2 1,434,490 - -1.9 1,434,539 + -0.5 1,434,678 - MPMX20_01368 0.17 -0.6 1,434,726 - MPMX20_01368 0.21 -1.2 1,434,765 - MPMX20_01368 0.24 -1.6 1,434,861 + MPMX20_01368 0.32 -0.6 1,434,912 + MPMX20_01368 0.36 -0.8 1,434,985 - MPMX20_01368 0.41 -2.1 1,435,161 + MPMX20_01368 0.55 -0.6 1,435,370 - MPMX20_01368 0.71 -2.1
Or see this region's nucleotide sequence