Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01049 and MPMX20_01050 are separated by 87 nucleotides MPMX20_01050 and MPMX20_01051 are separated by 78 nucleotides MPMX20_01051 and MPMX20_01052 are separated by 103 nucleotides
MPMX20_01049: MPMX20_01049 - HTH-type transcriptional regulator NorG, at 1,103,646 to 1,105,067
_01049
MPMX20_01050: MPMX20_01050 - hypothetical protein, at 1,105,155 to 1,105,766
_01050
MPMX20_01051: MPMX20_01051 - Lactose operon repressor, at 1,105,845 to 1,106,915
_01051
MPMX20_01052: MPMX20_01052 - Beta-galactosidase, at 1,107,019 to 1,110,111
_01052
Position (kb)
1105
1106
1107 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1104.859 kb on + strand, within MPMX20_01049 at 1104.872 kb on - strand, within MPMX20_01049 at 1104.879 kb on + strand, within MPMX20_01049 at 1104.888 kb on - strand, within MPMX20_01049 at 1104.910 kb on - strand, within MPMX20_01049 at 1104.920 kb on + strand, within MPMX20_01049 at 1104.967 kb on - strand at 1105.000 kb on + strand at 1105.013 kb on - strand at 1105.176 kb on - strand at 1105.194 kb on - strand at 1105.223 kb on - strand, within MPMX20_01050 at 1105.263 kb on - strand, within MPMX20_01050 at 1105.263 kb on - strand, within MPMX20_01050 at 1105.263 kb on - strand, within MPMX20_01050 at 1105.427 kb on - strand, within MPMX20_01050 at 1105.434 kb on - strand, within MPMX20_01050 at 1105.482 kb on - strand, within MPMX20_01050 at 1105.505 kb on + strand, within MPMX20_01050 at 1105.519 kb on + strand, within MPMX20_01050 at 1105.553 kb on - strand, within MPMX20_01050 at 1105.608 kb on - strand, within MPMX20_01050 at 1105.627 kb on + strand, within MPMX20_01050 at 1105.715 kb on - strand at 1105.717 kb on + strand at 1105.875 kb on - strand at 1105.877 kb on + strand at 1105.934 kb on - strand at 1106.001 kb on + strand, within MPMX20_01051 at 1106.106 kb on + strand, within MPMX20_01051 at 1106.106 kb on + strand, within MPMX20_01051 at 1106.114 kb on - strand, within MPMX20_01051 at 1106.151 kb on + strand, within MPMX20_01051 at 1106.154 kb on - strand, within MPMX20_01051 at 1106.156 kb on + strand, within MPMX20_01051 at 1106.252 kb on - strand, within MPMX20_01051 at 1106.294 kb on - strand, within MPMX20_01051 at 1106.311 kb on + strand, within MPMX20_01051 at 1106.318 kb on + strand, within MPMX20_01051 at 1106.328 kb on + strand, within MPMX20_01051 at 1106.402 kb on + strand, within MPMX20_01051 at 1106.436 kb on + strand, within MPMX20_01051 at 1106.444 kb on - strand, within MPMX20_01051 at 1106.444 kb on - strand, within MPMX20_01051 at 1106.459 kb on + strand, within MPMX20_01051 at 1106.467 kb on - strand, within MPMX20_01051 at 1106.492 kb on + strand, within MPMX20_01051 at 1106.584 kb on - strand, within MPMX20_01051 at 1106.606 kb on - strand, within MPMX20_01051 at 1106.713 kb on - strand, within MPMX20_01051 at 1106.759 kb on + strand, within MPMX20_01051 at 1106.767 kb on - strand, within MPMX20_01051 at 1106.856 kb on + strand at 1106.857 kb on + strand at 1106.861 kb on + strand at 1106.865 kb on - strand at 1106.870 kb on + strand at 1106.870 kb on + strand at 1107.107 kb on - strand at 1107.129 kb on - strand at 1107.136 kb on + strand at 1107.144 kb on - strand at 1107.322 kb on - strand at 1107.336 kb on - strand, within MPMX20_01052 at 1107.401 kb on + strand, within MPMX20_01052 at 1107.412 kb on + strand, within MPMX20_01052 at 1107.448 kb on + strand, within MPMX20_01052 at 1107.488 kb on - strand, within MPMX20_01052 at 1107.491 kb on - strand, within MPMX20_01052 at 1107.586 kb on + strand, within MPMX20_01052 at 1107.619 kb on + strand, within MPMX20_01052 at 1107.627 kb on - strand, within MPMX20_01052 at 1107.660 kb on + strand, within MPMX20_01052 at 1107.669 kb on + strand, within MPMX20_01052 at 1107.669 kb on + strand, within MPMX20_01052 at 1107.672 kb on - strand, within MPMX20_01052 at 1107.702 kb on + strand, within MPMX20_01052 at 1107.722 kb on - strand, within MPMX20_01052 at 1107.732 kb on - strand, within MPMX20_01052 at 1107.739 kb on + strand, within MPMX20_01052 at 1107.739 kb on + strand, within MPMX20_01052 at 1107.749 kb on - strand, within MPMX20_01052 at 1107.749 kb on - strand, within MPMX20_01052 at 1107.783 kb on + strand, within MPMX20_01052 at 1107.794 kb on + strand, within MPMX20_01052 at 1107.802 kb on + strand, within MPMX20_01052 at 1107.802 kb on - strand, within MPMX20_01052 at 1107.802 kb on - strand, within MPMX20_01052 at 1107.905 kb on + strand, within MPMX20_01052
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 1,104,859 + MPMX20_01049 0.85 -1.1 1,104,872 - MPMX20_01049 0.86 +6.8 1,104,879 + MPMX20_01049 0.87 -1.0 1,104,888 - MPMX20_01049 0.87 +0.9 1,104,910 - MPMX20_01049 0.89 -1.2 1,104,920 + MPMX20_01049 0.90 +0.8 1,104,967 - -2.2 1,105,000 + +0.4 1,105,013 - +0.4 1,105,176 - +1.8 1,105,194 - -2.1 1,105,223 - MPMX20_01050 0.11 +0.6 1,105,263 - MPMX20_01050 0.18 -1.2 1,105,263 - MPMX20_01050 0.18 -1.8 1,105,263 - MPMX20_01050 0.18 -1.8 1,105,427 - MPMX20_01050 0.44 -1.2 1,105,434 - MPMX20_01050 0.46 -0.1 1,105,482 - MPMX20_01050 0.53 -1.5 1,105,505 + MPMX20_01050 0.57 -0.3 1,105,519 + MPMX20_01050 0.59 -0.7 1,105,553 - MPMX20_01050 0.65 -1.9 1,105,608 - MPMX20_01050 0.74 +0.9 1,105,627 + MPMX20_01050 0.77 -1.2 1,105,715 - +2.8 1,105,717 + -0.4 1,105,875 - +1.8 1,105,877 + +1.8 1,105,934 - -2.2 1,106,001 + MPMX20_01051 0.15 -0.1 1,106,106 + MPMX20_01051 0.24 -0.5 1,106,106 + MPMX20_01051 0.24 -0.8 1,106,114 - MPMX20_01051 0.25 +0.2 1,106,151 + MPMX20_01051 0.29 -1.8 1,106,154 - MPMX20_01051 0.29 -0.4 1,106,156 + MPMX20_01051 0.29 +0.2 1,106,252 - MPMX20_01051 0.38 +1.6 1,106,294 - MPMX20_01051 0.42 +0.7 1,106,311 + MPMX20_01051 0.44 -0.3 1,106,318 + MPMX20_01051 0.44 +0.2 1,106,328 + MPMX20_01051 0.45 -1.6 1,106,402 + MPMX20_01051 0.52 -0.4 1,106,436 + MPMX20_01051 0.55 -1.6 1,106,444 - MPMX20_01051 0.56 +0.4 1,106,444 - MPMX20_01051 0.56 +0.3 1,106,459 + MPMX20_01051 0.57 -0.4 1,106,467 - MPMX20_01051 0.58 -1.8 1,106,492 + MPMX20_01051 0.60 -0.8 1,106,584 - MPMX20_01051 0.69 -1.2 1,106,606 - MPMX20_01051 0.71 -1.4 1,106,713 - MPMX20_01051 0.81 +2.0 1,106,759 + MPMX20_01051 0.85 -1.9 1,106,767 - MPMX20_01051 0.86 -2.3 1,106,856 + -0.5 1,106,857 + -1.3 1,106,861 + -1.3 1,106,865 - -1.5 1,106,870 + +0.5 1,106,870 + -2.1 1,107,107 - -0.0 1,107,129 - -3.0 1,107,136 + -1.0 1,107,144 - +0.3 1,107,322 - -0.8 1,107,336 - MPMX20_01052 0.10 -0.1 1,107,401 + MPMX20_01052 0.12 -0.5 1,107,412 + MPMX20_01052 0.13 -0.3 1,107,448 + MPMX20_01052 0.14 +0.7 1,107,488 - MPMX20_01052 0.15 -0.7 1,107,491 - MPMX20_01052 0.15 -0.8 1,107,586 + MPMX20_01052 0.18 -0.5 1,107,619 + MPMX20_01052 0.19 -3.2 1,107,627 - MPMX20_01052 0.20 +0.4 1,107,660 + MPMX20_01052 0.21 +0.4 1,107,669 + MPMX20_01052 0.21 +0.1 1,107,669 + MPMX20_01052 0.21 -0.5 1,107,672 - MPMX20_01052 0.21 -1.8 1,107,702 + MPMX20_01052 0.22 -0.1 1,107,722 - MPMX20_01052 0.23 -1.9 1,107,732 - MPMX20_01052 0.23 +0.2 1,107,739 + MPMX20_01052 0.23 -0.6 1,107,739 + MPMX20_01052 0.23 +0.7 1,107,749 - MPMX20_01052 0.24 -1.7 1,107,749 - MPMX20_01052 0.24 -1.9 1,107,783 + MPMX20_01052 0.25 -1.0 1,107,794 + MPMX20_01052 0.25 -0.8 1,107,802 + MPMX20_01052 0.25 -1.7 1,107,802 - MPMX20_01052 0.25 -0.2 1,107,802 - MPMX20_01052 0.25 -2.5 1,107,905 + MPMX20_01052 0.29 -1.3
Or see this region's nucleotide sequence