Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01041 and MPMX20_01042 are separated by 222 nucleotides MPMX20_01042 and MPMX20_01043 are separated by 35 nucleotides
MPMX20_01041: MPMX20_01041 - Multidrug resistance-like ATP-binding protein MdlB, at 1,096,893 to 1,098,674
_01041
MPMX20_01042: MPMX20_01042 - Nitrogen regulatory protein P-II 2, at 1,098,897 to 1,099,235
_01042
MPMX20_01043: MPMX20_01043 - Ammonia channel, at 1,099,271 to 1,100,557
_01043
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1097.927 kb on + strand, within MPMX20_01041 at 1097.977 kb on - strand, within MPMX20_01041 at 1097.995 kb on + strand, within MPMX20_01041 at 1098.050 kb on + strand, within MPMX20_01041 at 1098.058 kb on - strand, within MPMX20_01041 at 1098.118 kb on + strand, within MPMX20_01041 at 1098.192 kb on + strand, within MPMX20_01041 at 1098.201 kb on - strand, within MPMX20_01041 at 1098.211 kb on + strand, within MPMX20_01041 at 1098.227 kb on + strand, within MPMX20_01041 at 1098.239 kb on + strand, within MPMX20_01041 at 1098.247 kb on - strand, within MPMX20_01041 at 1098.252 kb on - strand, within MPMX20_01041 at 1098.282 kb on + strand, within MPMX20_01041 at 1098.313 kb on + strand, within MPMX20_01041 at 1098.320 kb on - strand, within MPMX20_01041 at 1098.341 kb on + strand, within MPMX20_01041 at 1098.429 kb on - strand, within MPMX20_01041 at 1098.524 kb on - strand at 1098.545 kb on + strand at 1098.557 kb on - strand at 1098.573 kb on - strand at 1098.905 kb on + strand at 1099.039 kb on + strand, within MPMX20_01042 at 1099.039 kb on + strand, within MPMX20_01042 at 1099.041 kb on + strand, within MPMX20_01042 at 1099.041 kb on + strand, within MPMX20_01042 at 1099.044 kb on + strand, within MPMX20_01042 at 1099.047 kb on - strand, within MPMX20_01042 at 1099.059 kb on - strand, within MPMX20_01042 at 1099.230 kb on + strand at 1099.251 kb on + strand at 1099.251 kb on + strand at 1099.253 kb on + strand at 1099.259 kb on - strand at 1099.261 kb on - strand at 1099.261 kb on - strand at 1099.313 kb on + strand at 1099.391 kb on - strand at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.444 kb on - strand, within MPMX20_01043 at 1099.506 kb on - strand, within MPMX20_01043 at 1099.506 kb on - strand, within MPMX20_01043 at 1099.524 kb on - strand, within MPMX20_01043 at 1099.723 kb on - strand, within MPMX20_01043 at 1099.725 kb on + strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.760 kb on - strand, within MPMX20_01043 at 1099.774 kb on + strand, within MPMX20_01043 at 1099.816 kb on - strand, within MPMX20_01043 at 1099.835 kb on + strand, within MPMX20_01043 at 1099.838 kb on - strand, within MPMX20_01043 at 1099.848 kb on - strand, within MPMX20_01043 at 1099.869 kb on + strand, within MPMX20_01043 at 1099.877 kb on - strand, within MPMX20_01043 at 1099.877 kb on - strand, within MPMX20_01043 at 1099.903 kb on - strand, within MPMX20_01043 at 1099.927 kb on - strand, within MPMX20_01043 at 1099.937 kb on + strand, within MPMX20_01043 at 1099.962 kb on + strand, within MPMX20_01043 at 1100.018 kb on + strand, within MPMX20_01043 at 1100.023 kb on + strand, within MPMX20_01043 at 1100.026 kb on - strand, within MPMX20_01043 at 1100.044 kb on + strand, within MPMX20_01043 at 1100.047 kb on - strand, within MPMX20_01043 at 1100.054 kb on + strand, within MPMX20_01043 at 1100.075 kb on - strand, within MPMX20_01043 at 1100.095 kb on + strand, within MPMX20_01043 at 1100.095 kb on + strand, within MPMX20_01043 at 1100.101 kb on + strand, within MPMX20_01043 at 1100.103 kb on - strand, within MPMX20_01043 at 1100.121 kb on + strand, within MPMX20_01043 at 1100.151 kb on - strand, within MPMX20_01043 at 1100.154 kb on + strand, within MPMX20_01043
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 1,097,927 + MPMX20_01041 0.58 -0.4 1,097,977 - MPMX20_01041 0.61 -2.7 1,097,995 + MPMX20_01041 0.62 -0.9 1,098,050 + MPMX20_01041 0.65 -2.4 1,098,058 - MPMX20_01041 0.65 -1.0 1,098,118 + MPMX20_01041 0.69 -1.1 1,098,192 + MPMX20_01041 0.73 +0.8 1,098,201 - MPMX20_01041 0.73 -0.3 1,098,211 + MPMX20_01041 0.74 -2.5 1,098,227 + MPMX20_01041 0.75 -0.1 1,098,239 + MPMX20_01041 0.76 +0.8 1,098,247 - MPMX20_01041 0.76 -1.8 1,098,252 - MPMX20_01041 0.76 -0.6 1,098,282 + MPMX20_01041 0.78 -1.7 1,098,313 + MPMX20_01041 0.80 -1.6 1,098,320 - MPMX20_01041 0.80 +0.4 1,098,341 + MPMX20_01041 0.81 +1.8 1,098,429 - MPMX20_01041 0.86 +0.2 1,098,524 - +0.3 1,098,545 + -0.1 1,098,557 - -0.7 1,098,573 - -1.0 1,098,905 + -0.2 1,099,039 + MPMX20_01042 0.42 -1.4 1,099,039 + MPMX20_01042 0.42 -1.5 1,099,041 + MPMX20_01042 0.42 -0.9 1,099,041 + MPMX20_01042 0.42 -1.5 1,099,044 + MPMX20_01042 0.43 -2.2 1,099,047 - MPMX20_01042 0.44 -2.9 1,099,059 - MPMX20_01042 0.48 +0.5 1,099,230 + -0.4 1,099,251 + -1.2 1,099,251 + -0.1 1,099,253 + +1.3 1,099,259 - -0.1 1,099,261 - -0.1 1,099,261 - -0.5 1,099,313 + +0.2 1,099,391 - -0.1 1,099,426 + MPMX20_01043 0.12 -0.2 1,099,426 + MPMX20_01043 0.12 -1.3 1,099,426 + MPMX20_01043 0.12 +2.8 1,099,426 + MPMX20_01043 0.12 -1.7 1,099,426 + MPMX20_01043 0.12 -0.1 1,099,426 + MPMX20_01043 0.12 -2.2 1,099,426 + MPMX20_01043 0.12 -0.8 1,099,426 + MPMX20_01043 0.12 -0.8 1,099,434 - MPMX20_01043 0.13 -2.6 1,099,434 - MPMX20_01043 0.13 -0.8 1,099,434 - MPMX20_01043 0.13 +1.2 1,099,434 - MPMX20_01043 0.13 -0.4 1,099,434 - MPMX20_01043 0.13 +2.8 1,099,434 - MPMX20_01043 0.13 +0.6 1,099,434 - MPMX20_01043 0.13 -0.6 1,099,434 - MPMX20_01043 0.13 +0.0 1,099,444 - MPMX20_01043 0.13 +0.5 1,099,506 - MPMX20_01043 0.18 +1.2 1,099,506 - MPMX20_01043 0.18 -2.2 1,099,524 - MPMX20_01043 0.20 -1.2 1,099,723 - MPMX20_01043 0.35 -1.8 1,099,725 + MPMX20_01043 0.35 +0.8 1,099,743 - MPMX20_01043 0.37 -0.1 1,099,743 - MPMX20_01043 0.37 +0.1 1,099,743 - MPMX20_01043 0.37 -2.2 1,099,760 - MPMX20_01043 0.38 +0.7 1,099,774 + MPMX20_01043 0.39 -0.4 1,099,816 - MPMX20_01043 0.42 +0.2 1,099,835 + MPMX20_01043 0.44 -0.4 1,099,838 - MPMX20_01043 0.44 -1.2 1,099,848 - MPMX20_01043 0.45 -0.2 1,099,869 + MPMX20_01043 0.46 -2.5 1,099,877 - MPMX20_01043 0.47 -0.9 1,099,877 - MPMX20_01043 0.47 +0.4 1,099,903 - MPMX20_01043 0.49 +0.2 1,099,927 - MPMX20_01043 0.51 +1.8 1,099,937 + MPMX20_01043 0.52 +0.8 1,099,962 + MPMX20_01043 0.54 -0.5 1,100,018 + MPMX20_01043 0.58 -0.5 1,100,023 + MPMX20_01043 0.58 +0.3 1,100,026 - MPMX20_01043 0.59 -0.3 1,100,044 + MPMX20_01043 0.60 -0.1 1,100,047 - MPMX20_01043 0.60 +0.0 1,100,054 + MPMX20_01043 0.61 -0.4 1,100,075 - MPMX20_01043 0.62 +0.6 1,100,095 + MPMX20_01043 0.64 -1.2 1,100,095 + MPMX20_01043 0.64 -0.8 1,100,101 + MPMX20_01043 0.64 +0.5 1,100,103 - MPMX20_01043 0.65 +1.8 1,100,121 + MPMX20_01043 0.66 -0.5 1,100,151 - MPMX20_01043 0.68 -0.4 1,100,154 + MPMX20_01043 0.69 -3.6
Or see this region's nucleotide sequence