Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00898 and MPMX20_00899 are separated by 0 nucleotides MPMX20_00899 and MPMX20_00900 are separated by 55 nucleotides MPMX20_00900 and MPMX20_00901 are separated by 132 nucleotides MPMX20_00901 and MPMX20_00902 are separated by 386 nucleotides
MPMX20_00898: MPMX20_00898 - hypothetical protein, at 946,750 to 947,466
_00898
MPMX20_00899: MPMX20_00899 - Ribonuclease HI, at 947,467 to 947,934
_00899
MPMX20_00900: MPMX20_00900 - DNA polymerase III subunit epsilon, at 947,990 to 948,730
_00900
MPMX20_00901: MPMX20_00901 - tRNA-Asp, at 948,863 to 948,939
_00901
MPMX20_00902: MPMX20_00902 - Glc operon transcriptional activator, at 949,326 to 950,045
_00902
Position (kb) 947
948
949 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 947.143 kb on + strand, within MPMX20_00898 at 947.157 kb on + strand, within MPMX20_00898 at 947.178 kb on + strand, within MPMX20_00898 at 947.208 kb on + strand, within MPMX20_00898 at 947.216 kb on - strand, within MPMX20_00898 at 947.249 kb on + strand, within MPMX20_00898 at 947.311 kb on + strand, within MPMX20_00898 at 947.311 kb on + strand, within MPMX20_00898 at 947.314 kb on - strand, within MPMX20_00898 at 947.342 kb on + strand, within MPMX20_00898 at 947.349 kb on + strand, within MPMX20_00898 at 947.491 kb on + strand at 947.504 kb on + strand at 947.575 kb on - strand, within MPMX20_00899 at 947.576 kb on - strand, within MPMX20_00899 at 947.707 kb on - strand, within MPMX20_00899 at 947.785 kb on + strand, within MPMX20_00899 at 947.880 kb on + strand, within MPMX20_00899 at 947.903 kb on - strand at 947.996 kb on + strand at 947.996 kb on + strand at 948.967 kb on + strand at 948.980 kb on - strand at 949.343 kb on - strand at 949.374 kb on - strand at 949.410 kb on - strand, within MPMX20_00902 at 949.442 kb on + strand, within MPMX20_00902 at 949.450 kb on - strand, within MPMX20_00902 at 949.456 kb on + strand, within MPMX20_00902 at 949.516 kb on + strand, within MPMX20_00902 at 949.524 kb on - strand, within MPMX20_00902 at 949.550 kb on + strand, within MPMX20_00902 at 949.550 kb on + strand, within MPMX20_00902 at 949.632 kb on - strand, within MPMX20_00902 at 949.682 kb on + strand, within MPMX20_00902 at 949.687 kb on + strand, within MPMX20_00902 at 949.695 kb on - strand, within MPMX20_00902
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 947,143 + MPMX20_00898 0.55 -0.5 947,157 + MPMX20_00898 0.57 +2.2 947,178 + MPMX20_00898 0.60 +0.7 947,208 + MPMX20_00898 0.64 -0.7 947,216 - MPMX20_00898 0.65 -0.5 947,249 + MPMX20_00898 0.70 +0.4 947,311 + MPMX20_00898 0.78 -0.1 947,311 + MPMX20_00898 0.78 -0.4 947,314 - MPMX20_00898 0.79 +0.7 947,342 + MPMX20_00898 0.83 -0.5 947,349 + MPMX20_00898 0.84 +0.2 947,491 + +1.0 947,504 + +0.4 947,575 - MPMX20_00899 0.23 -0.2 947,576 - MPMX20_00899 0.23 -0.4 947,707 - MPMX20_00899 0.51 -0.2 947,785 + MPMX20_00899 0.68 +0.8 947,880 + MPMX20_00899 0.88 -0.6 947,903 - +0.2 947,996 + +4.8 947,996 + -1.8 948,967 + +0.6 948,980 - -2.3 949,343 - -1.7 949,374 - +0.3 949,410 - MPMX20_00902 0.12 -0.2 949,442 + MPMX20_00902 0.16 +0.2 949,450 - MPMX20_00902 0.17 +0.1 949,456 + MPMX20_00902 0.18 -1.9 949,516 + MPMX20_00902 0.26 -0.0 949,524 - MPMX20_00902 0.28 -0.5 949,550 + MPMX20_00902 0.31 -1.1 949,550 + MPMX20_00902 0.31 -1.8 949,632 - MPMX20_00902 0.42 +0.8 949,682 + MPMX20_00902 0.49 +1.2 949,687 + MPMX20_00902 0.50 +0.4 949,695 - MPMX20_00902 0.51 -1.2
Or see this region's nucleotide sequence