Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00831

Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00830 and MPMX20_00831 are separated by 59 nucleotidesMPMX20_00831 and MPMX20_00832 are separated by 176 nucleotidesMPMX20_00832 and MPMX20_00833 overlap by 11 nucleotides MPMX20_00830: MPMX20_00830 - Glutamyl-Q tRNA(Asp) synthetase, at 872,181 to 873,071 _00830 MPMX20_00831: MPMX20_00831 - RNA polymerase-binding transcription factor DksA, at 873,131 to 873,586 _00831 MPMX20_00832: MPMX20_00832 - Sugar fermentation stimulation protein A, at 873,763 to 874,467 _00832 MPMX20_00833: MPMX20_00833 - RNA 2',3'-cyclic phosphodiesterase, at 874,457 to 875,011 _00833 Position (kb) 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12at 872.138 kb on - strandat 872.187 kb on - strandat 872.328 kb on + strand, within MPMX20_00830at 872.336 kb on - strand, within MPMX20_00830at 872.356 kb on + strand, within MPMX20_00830at 872.395 kb on - strand, within MPMX20_00830at 872.402 kb on - strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.500 kb on - strand, within MPMX20_00830at 872.500 kb on - strand, within MPMX20_00830at 872.515 kb on - strand, within MPMX20_00830at 872.560 kb on - strand, within MPMX20_00830at 872.690 kb on + strand, within MPMX20_00830at 872.690 kb on + strand, within MPMX20_00830at 872.693 kb on - strand, within MPMX20_00830at 872.693 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.734 kb on - strand, within MPMX20_00830at 872.760 kb on + strand, within MPMX20_00830at 872.769 kb on - strand, within MPMX20_00830at 872.895 kb on + strand, within MPMX20_00830at 872.900 kb on + strand, within MPMX20_00830at 872.974 kb on - strand, within MPMX20_00830at 873.047 kb on + strandat 873.069 kb on + strandat 873.103 kb on + strandat 873.111 kb on - strandat 873.111 kb on - strandat 873.111 kb on - strandat 873.113 kb on + strandat 873.127 kb on + strandat 873.187 kb on + strand, within MPMX20_00831at 873.188 kb on - strand, within MPMX20_00831at 873.195 kb on - strand, within MPMX20_00831at 873.329 kb on + strand, within MPMX20_00831at 873.339 kb on - strand, within MPMX20_00831at 873.364 kb on + strand, within MPMX20_00831at 873.364 kb on + strand, within MPMX20_00831at 873.470 kb on - strand, within MPMX20_00831at 873.470 kb on - strand, within MPMX20_00831at 873.484 kb on - strand, within MPMX20_00831at 873.486 kb on - strand, within MPMX20_00831at 873.596 kb on + strandat 873.608 kb on + strandat 873.608 kb on + strandat 873.616 kb on - strandat 873.616 kb on - strandat 873.617 kb on + strandat 873.650 kb on - strandat 873.650 kb on - strandat 873.683 kb on + strandat 873.691 kb on + strandat 873.691 kb on - strandat 873.691 kb on - strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.737 kb on - strandat 873.762 kb on - strandat 873.802 kb on - strandat 873.826 kb on + strandat 873.827 kb on + strandat 873.834 kb on + strand, within MPMX20_00832at 873.842 kb on + strand, within MPMX20_00832at 873.930 kb on - strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.981 kb on - strand, within MPMX20_00832at 873.999 kb on - strand, within MPMX20_00832at 874.005 kb on + strand, within MPMX20_00832at 874.007 kb on - strand, within MPMX20_00832at 874.013 kb on - strand, within MPMX20_00832at 874.092 kb on - strand, within MPMX20_00832at 874.112 kb on - strand, within MPMX20_00832at 874.125 kb on - strand, within MPMX20_00832at 874.157 kb on + strand, within MPMX20_00832at 874.166 kb on + strand, within MPMX20_00832at 874.167 kb on + strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.244 kb on + strand, within MPMX20_00832at 874.271 kb on - strand, within MPMX20_00832at 874.313 kb on - strand, within MPMX20_00832at 874.340 kb on - strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.369 kb on - strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.374 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.394 kb on - strand, within MPMX20_00832at 874.404 kb on - strandat 874.434 kb on + strandat 874.480 kb on + strandat 874.510 kb on - strandat 874.528 kb on - strand, within MPMX20_00833at 874.532 kb on + strand, within MPMX20_00833at 874.540 kb on - strand, within MPMX20_00833at 874.559 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
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872,138 - -2.0
872,187 - -0.6
872,328 + MPMX20_00830 0.16 +2.8
872,336 - MPMX20_00830 0.17 +1.4
872,356 + MPMX20_00830 0.20 +0.8
872,395 - MPMX20_00830 0.24 -0.5
872,402 - MPMX20_00830 0.25 -1.8
872,492 + MPMX20_00830 0.35 +1.7
872,492 + MPMX20_00830 0.35 +1.8
872,492 + MPMX20_00830 0.35 -1.7
872,500 - MPMX20_00830 0.36 +4.8
872,500 - MPMX20_00830 0.36 +1.9
872,515 - MPMX20_00830 0.37 -1.5
872,560 - MPMX20_00830 0.43 -1.7
872,690 + MPMX20_00830 0.57 -1.7
872,690 + MPMX20_00830 0.57 +0.8
872,693 - MPMX20_00830 0.57 -0.2
872,693 - MPMX20_00830 0.57 -0.4
872,698 - MPMX20_00830 0.58 +0.1
872,698 - MPMX20_00830 0.58 -0.2
872,698 - MPMX20_00830 0.58 -1.0
872,734 - MPMX20_00830 0.62 -0.8
872,760 + MPMX20_00830 0.65 -2.2
872,769 - MPMX20_00830 0.66 -1.8
872,895 + MPMX20_00830 0.80 +0.2
872,900 + MPMX20_00830 0.81 -2.0
872,974 - MPMX20_00830 0.89 -0.2
873,047 + -2.2
873,069 + -0.5
873,103 + +0.4
873,111 - -2.2
873,111 - -0.7
873,111 - +2.0
873,113 + -0.9
873,127 + -2.7
873,187 + MPMX20_00831 0.12 +1.2
873,188 - MPMX20_00831 0.12 -0.2
873,195 - MPMX20_00831 0.14 -3.0
873,329 + MPMX20_00831 0.43 +0.4
873,339 - MPMX20_00831 0.46 -3.0
873,364 + MPMX20_00831 0.51 -1.8
873,364 + MPMX20_00831 0.51 -3.1
873,470 - MPMX20_00831 0.74 -2.8
873,470 - MPMX20_00831 0.74 -2.3
873,484 - MPMX20_00831 0.77 -2.0
873,486 - MPMX20_00831 0.78 -1.3
873,596 + -2.9
873,608 + -1.2
873,608 + -0.0
873,616 - -2.2
873,616 - -2.6
873,617 + -0.9
873,650 - -1.7
873,650 - -0.0
873,683 + -1.6
873,691 + +0.2
873,691 - -0.6
873,691 - -2.0
873,693 + +0.8
873,693 + -0.3
873,693 + -0.5
873,737 - +0.3
873,762 - -0.1
873,802 - +1.0
873,826 + -0.4
873,827 + -0.9
873,834 + MPMX20_00832 0.10 -1.1
873,842 + MPMX20_00832 0.11 -0.6
873,930 - MPMX20_00832 0.24 -0.9
873,937 + MPMX20_00832 0.25 -2.5
873,937 + MPMX20_00832 0.25 -0.0
873,937 + MPMX20_00832 0.25 -1.7
873,945 - MPMX20_00832 0.26 -0.5
873,945 - MPMX20_00832 0.26 +0.9
873,945 - MPMX20_00832 0.26 -0.7
873,945 - MPMX20_00832 0.26 +0.8
873,945 - MPMX20_00832 0.26 -0.5
873,945 - MPMX20_00832 0.26 -0.4
873,971 - MPMX20_00832 0.30 +0.9
873,971 - MPMX20_00832 0.30 -1.0
873,971 - MPMX20_00832 0.30 +0.8
873,976 - MPMX20_00832 0.30 +0.8
873,976 - MPMX20_00832 0.30 -0.2
873,981 - MPMX20_00832 0.31 +0.5
873,999 - MPMX20_00832 0.33 -1.2
874,005 + MPMX20_00832 0.34 -0.8
874,007 - MPMX20_00832 0.35 -2.4
874,013 - MPMX20_00832 0.35 -2.0
874,092 - MPMX20_00832 0.47 -1.7
874,112 - MPMX20_00832 0.50 -0.5
874,125 - MPMX20_00832 0.51 -1.2
874,157 + MPMX20_00832 0.56 -0.1
874,166 + MPMX20_00832 0.57 -1.9
874,167 + MPMX20_00832 0.57 -0.5
874,175 - MPMX20_00832 0.58 -0.3
874,175 - MPMX20_00832 0.58 -1.2
874,175 - MPMX20_00832 0.58 -0.2
874,186 + MPMX20_00832 0.60 -0.1
874,186 + MPMX20_00832 0.60 -1.1
874,194 - MPMX20_00832 0.61 +2.8
874,194 - MPMX20_00832 0.61 +1.1
874,194 - MPMX20_00832 0.61 +0.3
874,194 - MPMX20_00832 0.61 -1.0
874,244 + MPMX20_00832 0.68 -2.2
874,271 - MPMX20_00832 0.72 +0.2
874,313 - MPMX20_00832 0.78 +1.8
874,340 - MPMX20_00832 0.82 +1.5
874,355 + MPMX20_00832 0.84 -0.7
874,355 + MPMX20_00832 0.84 -0.2
874,369 - MPMX20_00832 0.86 +12.2
874,370 + MPMX20_00832 0.86 -1.9
874,370 + MPMX20_00832 0.86 -0.2
874,374 - MPMX20_00832 0.87 -1.3
874,378 - MPMX20_00832 0.87 +0.2
874,378 - MPMX20_00832 0.87 -0.8
874,394 - MPMX20_00832 0.90 +1.9
874,404 - -1.1
874,434 + -0.7
874,480 + -2.4
874,510 - -3.4
874,528 - MPMX20_00833 0.13 +0.5
874,532 + MPMX20_00833 0.14 +2.2
874,540 - MPMX20_00833 0.15 -1.1
874,559 + MPMX20_00833 0.18 -1.6
874,560 + MPMX20_00833 0.19 -1.3
874,560 + MPMX20_00833 0.19 -1.9

Or see this region's nucleotide sequence