Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00800 and MPMX20_00801 are separated by 87 nucleotides MPMX20_00801 and MPMX20_00802 are separated by 9 nucleotides MPMX20_00802 and MPMX20_00803 are separated by 18 nucleotides MPMX20_00803 and MPMX20_00804 are separated by 10 nucleotides
MPMX20_00800: MPMX20_00800 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 836,616 to 837,509
_00800
MPMX20_00801: MPMX20_00801 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 837,597 to 838,148
_00801
MPMX20_00802: MPMX20_00802 - Protein AmpE, at 838,158 to 839,012
_00802
MPMX20_00803: MPMX20_00803 - Extracellular exo-alpha-(1->5)-L-arabinofuranosidase, at 839,031 to 839,981
_00803
MPMX20_00804: MPMX20_00804 - Inner membrane symporter YicJ, at 839,992 to 841,389
_00804
Position (kb)
838
839
840 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 837.198 kb on - strand, within MPMX20_00800 at 837.284 kb on + strand, within MPMX20_00800 at 837.284 kb on + strand, within MPMX20_00800 at 837.289 kb on + strand, within MPMX20_00800 at 837.425 kb on + strand at 837.492 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.555 kb on + strand at 837.558 kb on - strand at 837.563 kb on - strand at 837.563 kb on - strand at 837.563 kb on - strand at 837.563 kb on - strand at 837.563 kb on - strand at 837.563 kb on - strand at 837.563 kb on - strand at 837.563 kb on - strand at 837.632 kb on + strand at 837.640 kb on - strand at 837.685 kb on - strand, within MPMX20_00801 at 837.831 kb on - strand, within MPMX20_00801 at 837.849 kb on - strand, within MPMX20_00801 at 837.937 kb on + strand, within MPMX20_00801 at 838.000 kb on - strand, within MPMX20_00801 at 838.006 kb on + strand, within MPMX20_00801 at 838.289 kb on + strand, within MPMX20_00802 at 838.289 kb on + strand, within MPMX20_00802 at 838.297 kb on - strand, within MPMX20_00802 at 838.297 kb on - strand, within MPMX20_00802 at 838.297 kb on - strand, within MPMX20_00802 at 838.399 kb on + strand, within MPMX20_00802 at 838.399 kb on + strand, within MPMX20_00802 at 838.427 kb on + strand, within MPMX20_00802 at 838.573 kb on - strand, within MPMX20_00802 at 838.573 kb on - strand, within MPMX20_00802 at 838.588 kb on + strand, within MPMX20_00802 at 838.596 kb on + strand, within MPMX20_00802 at 838.601 kb on + strand, within MPMX20_00802 at 838.606 kb on + strand, within MPMX20_00802 at 838.609 kb on - strand, within MPMX20_00802 at 838.614 kb on - strand, within MPMX20_00802 at 838.621 kb on + strand, within MPMX20_00802 at 838.673 kb on + strand, within MPMX20_00802 at 838.681 kb on - strand, within MPMX20_00802 at 838.681 kb on - strand, within MPMX20_00802 at 838.690 kb on + strand, within MPMX20_00802 at 838.690 kb on + strand, within MPMX20_00802 at 838.698 kb on - strand, within MPMX20_00802 at 838.698 kb on - strand, within MPMX20_00802 at 838.740 kb on + strand, within MPMX20_00802 at 838.767 kb on - strand, within MPMX20_00802 at 838.860 kb on - strand, within MPMX20_00802 at 838.880 kb on + strand, within MPMX20_00802 at 838.899 kb on - strand, within MPMX20_00802 at 839.006 kb on + strand at 839.014 kb on - strand at 839.014 kb on - strand at 839.024 kb on + strand at 839.024 kb on + strand at 839.024 kb on + strand at 839.032 kb on - strand at 839.037 kb on - strand at 839.135 kb on - strand, within MPMX20_00803 at 839.142 kb on - strand, within MPMX20_00803 at 839.154 kb on - strand, within MPMX20_00803 at 839.161 kb on + strand, within MPMX20_00803 at 839.161 kb on + strand, within MPMX20_00803 at 839.161 kb on + strand, within MPMX20_00803 at 839.169 kb on - strand, within MPMX20_00803 at 839.169 kb on - strand, within MPMX20_00803 at 839.169 kb on - strand, within MPMX20_00803 at 839.303 kb on + strand, within MPMX20_00803 at 839.313 kb on + strand, within MPMX20_00803 at 839.321 kb on - strand, within MPMX20_00803 at 839.331 kb on + strand, within MPMX20_00803 at 839.377 kb on - strand, within MPMX20_00803 at 839.471 kb on - strand, within MPMX20_00803 at 839.498 kb on + strand, within MPMX20_00803 at 839.498 kb on + strand, within MPMX20_00803 at 839.506 kb on - strand, within MPMX20_00803 at 839.523 kb on + strand, within MPMX20_00803 at 839.623 kb on + strand, within MPMX20_00803 at 839.659 kb on + strand, within MPMX20_00803 at 839.659 kb on + strand, within MPMX20_00803 at 839.664 kb on + strand, within MPMX20_00803 at 839.693 kb on + strand, within MPMX20_00803 at 839.701 kb on - strand, within MPMX20_00803 at 839.703 kb on + strand, within MPMX20_00803 at 839.711 kb on - strand, within MPMX20_00803 at 839.714 kb on + strand, within MPMX20_00803 at 839.799 kb on + strand, within MPMX20_00803 at 839.828 kb on + strand, within MPMX20_00803 at 839.846 kb on + strand, within MPMX20_00803 at 839.846 kb on + strand, within MPMX20_00803 at 839.846 kb on - strand, within MPMX20_00803 at 839.891 kb on + strand at 839.905 kb on + strand at 839.905 kb on + strand at 839.915 kb on + strand at 839.973 kb on + strand at 839.981 kb on - strand at 840.008 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 837,198 - MPMX20_00800 0.65 -0.0 837,284 + MPMX20_00800 0.75 -2.0 837,284 + MPMX20_00800 0.75 +1.0 837,289 + MPMX20_00800 0.75 +0.4 837,425 + -0.5 837,492 + +0.3 837,555 + -0.4 837,555 + +0.2 837,555 + -1.7 837,555 + -0.0 837,555 + +0.4 837,555 + +0.7 837,555 + +0.1 837,555 + +0.4 837,555 + +0.7 837,555 + -0.3 837,558 - -0.3 837,563 - +0.6 837,563 - +0.7 837,563 - +0.7 837,563 - +0.8 837,563 - -0.1 837,563 - +0.9 837,563 - -1.3 837,563 - +1.2 837,632 + +0.7 837,640 - -0.1 837,685 - MPMX20_00801 0.16 -1.6 837,831 - MPMX20_00801 0.42 -1.2 837,849 - MPMX20_00801 0.46 -0.7 837,937 + MPMX20_00801 0.62 -1.5 838,000 - MPMX20_00801 0.73 -0.1 838,006 + MPMX20_00801 0.74 -1.0 838,289 + MPMX20_00802 0.15 -1.2 838,289 + MPMX20_00802 0.15 -1.1 838,297 - MPMX20_00802 0.16 +0.0 838,297 - MPMX20_00802 0.16 -0.3 838,297 - MPMX20_00802 0.16 -0.3 838,399 + MPMX20_00802 0.28 +0.7 838,399 + MPMX20_00802 0.28 -1.6 838,427 + MPMX20_00802 0.31 -2.8 838,573 - MPMX20_00802 0.49 -0.6 838,573 - MPMX20_00802 0.49 -1.3 838,588 + MPMX20_00802 0.50 -1.0 838,596 + MPMX20_00802 0.51 -0.9 838,601 + MPMX20_00802 0.52 -0.8 838,606 + MPMX20_00802 0.52 -0.8 838,609 - MPMX20_00802 0.53 -2.5 838,614 - MPMX20_00802 0.53 +1.2 838,621 + MPMX20_00802 0.54 -0.7 838,673 + MPMX20_00802 0.60 -2.6 838,681 - MPMX20_00802 0.61 -0.4 838,681 - MPMX20_00802 0.61 -1.3 838,690 + MPMX20_00802 0.62 +1.9 838,690 + MPMX20_00802 0.62 -1.4 838,698 - MPMX20_00802 0.63 +1.2 838,698 - MPMX20_00802 0.63 -0.8 838,740 + MPMX20_00802 0.68 -0.5 838,767 - MPMX20_00802 0.71 +1.3 838,860 - MPMX20_00802 0.82 -2.3 838,880 + MPMX20_00802 0.84 -1.0 838,899 - MPMX20_00802 0.87 +2.7 839,006 + +0.8 839,014 - +1.2 839,014 - -0.5 839,024 + -0.8 839,024 + +0.4 839,024 + +2.7 839,032 - +1.0 839,037 - -2.0 839,135 - MPMX20_00803 0.11 -0.4 839,142 - MPMX20_00803 0.12 -1.0 839,154 - MPMX20_00803 0.13 +1.9 839,161 + MPMX20_00803 0.14 +0.4 839,161 + MPMX20_00803 0.14 -0.4 839,161 + MPMX20_00803 0.14 -1.2 839,169 - MPMX20_00803 0.15 -0.5 839,169 - MPMX20_00803 0.15 -2.3 839,169 - MPMX20_00803 0.15 -0.6 839,303 + MPMX20_00803 0.29 +0.7 839,313 + MPMX20_00803 0.30 -0.8 839,321 - MPMX20_00803 0.30 +2.1 839,331 + MPMX20_00803 0.32 -0.6 839,377 - MPMX20_00803 0.36 +4.0 839,471 - MPMX20_00803 0.46 +0.0 839,498 + MPMX20_00803 0.49 +1.3 839,498 + MPMX20_00803 0.49 -1.4 839,506 - MPMX20_00803 0.50 -3.0 839,523 + MPMX20_00803 0.52 -2.1 839,623 + MPMX20_00803 0.62 +0.2 839,659 + MPMX20_00803 0.66 -0.5 839,659 + MPMX20_00803 0.66 -1.1 839,664 + MPMX20_00803 0.67 +4.3 839,693 + MPMX20_00803 0.70 -1.0 839,701 - MPMX20_00803 0.70 +0.1 839,703 + MPMX20_00803 0.71 -1.0 839,711 - MPMX20_00803 0.72 +0.7 839,714 + MPMX20_00803 0.72 -1.3 839,799 + MPMX20_00803 0.81 +1.2 839,828 + MPMX20_00803 0.84 +1.0 839,846 + MPMX20_00803 0.86 +0.2 839,846 + MPMX20_00803 0.86 +1.4 839,846 - MPMX20_00803 0.86 -1.0 839,891 + -2.8 839,905 + -0.7 839,905 + -1.0 839,915 + -0.5 839,973 + -0.6 839,981 - +1.6 840,008 + +1.0
Or see this region's nucleotide sequence