Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00801

Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00800 and MPMX20_00801 are separated by 87 nucleotidesMPMX20_00801 and MPMX20_00802 are separated by 9 nucleotidesMPMX20_00802 and MPMX20_00803 are separated by 18 nucleotides MPMX20_00800: MPMX20_00800 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 836,616 to 837,509 _00800 MPMX20_00801: MPMX20_00801 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 837,597 to 838,148 _00801 MPMX20_00802: MPMX20_00802 - Protein AmpE, at 838,158 to 839,012 _00802 MPMX20_00803: MPMX20_00803 - Extracellular exo-alpha-(1->5)-L-arabinofuranosidase, at 839,031 to 839,981 _00803 Position (kb) 837 838 839Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 836.653 kb on + strandat 836.661 kb on - strandat 836.719 kb on + strand, within MPMX20_00800at 836.791 kb on + strand, within MPMX20_00800at 836.799 kb on - strand, within MPMX20_00800at 836.844 kb on - strand, within MPMX20_00800at 836.885 kb on - strand, within MPMX20_00800at 836.888 kb on + strand, within MPMX20_00800at 836.966 kb on + strand, within MPMX20_00800at 836.984 kb on - strand, within MPMX20_00800at 836.998 kb on + strand, within MPMX20_00800at 837.009 kb on - strand, within MPMX20_00800at 837.009 kb on - strand, within MPMX20_00800at 837.018 kb on + strand, within MPMX20_00800at 837.026 kb on - strand, within MPMX20_00800at 837.060 kb on + strand, within MPMX20_00800at 837.105 kb on + strand, within MPMX20_00800at 837.198 kb on - strand, within MPMX20_00800at 837.284 kb on + strand, within MPMX20_00800at 837.284 kb on + strand, within MPMX20_00800at 837.289 kb on + strand, within MPMX20_00800at 837.425 kb on + strandat 837.492 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.558 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.632 kb on + strandat 837.640 kb on - strandat 837.685 kb on - strand, within MPMX20_00801at 837.831 kb on - strand, within MPMX20_00801at 837.849 kb on - strand, within MPMX20_00801at 837.937 kb on + strand, within MPMX20_00801at 838.000 kb on - strand, within MPMX20_00801at 838.006 kb on + strand, within MPMX20_00801at 838.289 kb on + strand, within MPMX20_00802at 838.289 kb on + strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.427 kb on + strand, within MPMX20_00802at 838.573 kb on - strand, within MPMX20_00802at 838.573 kb on - strand, within MPMX20_00802at 838.588 kb on + strand, within MPMX20_00802at 838.596 kb on + strand, within MPMX20_00802at 838.601 kb on + strand, within MPMX20_00802at 838.606 kb on + strand, within MPMX20_00802at 838.609 kb on - strand, within MPMX20_00802at 838.614 kb on - strand, within MPMX20_00802at 838.621 kb on + strand, within MPMX20_00802at 838.673 kb on + strand, within MPMX20_00802at 838.681 kb on - strand, within MPMX20_00802at 838.681 kb on - strand, within MPMX20_00802at 838.690 kb on + strand, within MPMX20_00802at 838.690 kb on + strand, within MPMX20_00802at 838.698 kb on - strand, within MPMX20_00802at 838.698 kb on - strand, within MPMX20_00802at 838.740 kb on + strand, within MPMX20_00802at 838.767 kb on - strand, within MPMX20_00802at 838.860 kb on - strand, within MPMX20_00802at 838.880 kb on + strand, within MPMX20_00802at 838.899 kb on - strand, within MPMX20_00802at 839.006 kb on + strandat 839.014 kb on - strandat 839.014 kb on - strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.032 kb on - strandat 839.037 kb on - strandat 839.135 kb on - strand, within MPMX20_00803at 839.142 kb on - strand, within MPMX20_00803

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
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836,653 + -1.7
836,661 - -2.1
836,719 + MPMX20_00800 0.12 +0.5
836,791 + MPMX20_00800 0.20 +1.8
836,799 - MPMX20_00800 0.20 -2.8
836,844 - MPMX20_00800 0.26 +0.4
836,885 - MPMX20_00800 0.30 +1.2
836,888 + MPMX20_00800 0.30 -0.3
836,966 + MPMX20_00800 0.39 -2.2
836,984 - MPMX20_00800 0.41 -1.8
836,998 + MPMX20_00800 0.43 -0.4
837,009 - MPMX20_00800 0.44 -0.9
837,009 - MPMX20_00800 0.44 +0.8
837,018 + MPMX20_00800 0.45 -0.5
837,026 - MPMX20_00800 0.46 -0.4
837,060 + MPMX20_00800 0.50 +1.9
837,105 + MPMX20_00800 0.55 -1.8
837,198 - MPMX20_00800 0.65 +0.0
837,284 + MPMX20_00800 0.75 -2.0
837,284 + MPMX20_00800 0.75 +1.0
837,289 + MPMX20_00800 0.75 +0.4
837,425 + -0.5
837,492 + +0.3
837,555 + -0.4
837,555 + +0.2
837,555 + -1.7
837,555 + +0.0
837,555 + +0.4
837,555 + +0.8
837,555 + +0.1
837,555 + +0.4
837,555 + +0.8
837,555 + -0.3
837,558 - -0.2
837,563 - +0.6
837,563 - +0.8
837,563 - +0.7
837,563 - +0.9
837,563 - -0.0
837,563 - +0.9
837,563 - -1.3
837,563 - +1.2
837,632 + +0.8
837,640 - -0.0
837,685 - MPMX20_00801 0.16 -1.6
837,831 - MPMX20_00801 0.42 -1.2
837,849 - MPMX20_00801 0.46 -0.7
837,937 + MPMX20_00801 0.62 -1.5
838,000 - MPMX20_00801 0.73 -0.0
838,006 + MPMX20_00801 0.74 -0.9
838,289 + MPMX20_00802 0.15 -1.1
838,289 + MPMX20_00802 0.15 -1.1
838,297 - MPMX20_00802 0.16 +0.1
838,297 - MPMX20_00802 0.16 -0.3
838,297 - MPMX20_00802 0.16 -0.2
838,399 + MPMX20_00802 0.28 +0.8
838,399 + MPMX20_00802 0.28 -1.6
838,427 + MPMX20_00802 0.31 -2.8
838,573 - MPMX20_00802 0.49 -0.6
838,573 - MPMX20_00802 0.49 -1.3
838,588 + MPMX20_00802 0.50 -0.9
838,596 + MPMX20_00802 0.51 -0.9
838,601 + MPMX20_00802 0.52 -0.8
838,606 + MPMX20_00802 0.52 -0.8
838,609 - MPMX20_00802 0.53 -2.5
838,614 - MPMX20_00802 0.53 +1.3
838,621 + MPMX20_00802 0.54 -0.7
838,673 + MPMX20_00802 0.60 -2.6
838,681 - MPMX20_00802 0.61 -0.4
838,681 - MPMX20_00802 0.61 -1.2
838,690 + MPMX20_00802 0.62 +1.9
838,690 + MPMX20_00802 0.62 -1.4
838,698 - MPMX20_00802 0.63 +1.2
838,698 - MPMX20_00802 0.63 -0.8
838,740 + MPMX20_00802 0.68 -0.5
838,767 - MPMX20_00802 0.71 +1.3
838,860 - MPMX20_00802 0.82 -2.3
838,880 + MPMX20_00802 0.84 -0.9
838,899 - MPMX20_00802 0.87 +2.8
839,006 + +0.8
839,014 - +1.2
839,014 - -0.5
839,024 + -0.8
839,024 + +0.4
839,024 + +2.8
839,032 - +1.1
839,037 - -2.0
839,135 - MPMX20_00803 0.11 -0.4
839,142 - MPMX20_00803 0.12 -0.9

Or see this region's nucleotide sequence