Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00478

Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00476 and MPMX20_00477 are separated by 341 nucleotidesMPMX20_00477 and MPMX20_00478 are separated by 6 nucleotidesMPMX20_00478 and MPMX20_00479 are separated by 4 nucleotidesMPMX20_00479 and MPMX20_00480 are separated by 41 nucleotidesMPMX20_00480 and MPMX20_00481 are separated by 150 nucleotides MPMX20_00476: MPMX20_00476 - hypothetical protein, at 491,406 to 491,681 _00476 MPMX20_00477: MPMX20_00477 - 30S ribosomal protein S6, at 492,023 to 492,418 _00477 MPMX20_00478: MPMX20_00478 - Primosomal replication protein N, at 492,425 to 492,739 _00478 MPMX20_00479: MPMX20_00479 - 30S ribosomal protein S18, at 492,744 to 492,971 _00479 MPMX20_00480: MPMX20_00480 - 50S ribosomal protein L9, at 493,013 to 493,462 _00480 MPMX20_00481: MPMX20_00481 - hypothetical protein, at 493,613 to 494,542 _00481 Position (kb) 492 493Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 491.427 kb on + strandat 491.430 kb on - strandat 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.464 kb on + strand, within MPMX20_00476at 491.471 kb on + strand, within MPMX20_00476at 491.472 kb on - strand, within MPMX20_00476at 491.553 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.571 kb on + strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.574 kb on - strand, within MPMX20_00476at 491.589 kb on + strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.640 kb on + strand, within MPMX20_00476at 491.690 kb on + strandat 491.690 kb on + strandat 491.690 kb on + strandat 491.690 kb on + strandat 491.690 kb on + strandat 491.692 kb on + strandat 491.697 kb on + strandat 491.698 kb on - strandat 491.698 kb on - strandat 491.698 kb on - strandat 491.707 kb on + strandat 491.707 kb on + strandat 491.715 kb on - strandat 491.715 kb on - strandat 491.722 kb on - strandat 491.727 kb on - strandat 491.849 kb on + strandat 491.856 kb on - strandat 491.859 kb on + strandat 491.859 kb on + strandat 491.862 kb on - strandat 492.280 kb on + strand, within MPMX20_00477at 492.328 kb on + strand, within MPMX20_00477at 492.445 kb on + strandat 493.043 kb on + strandat 493.066 kb on + strand, within MPMX20_00480at 493.072 kb on + strand, within MPMX20_00480at 493.111 kb on + strand, within MPMX20_00480at 493.111 kb on + strand, within MPMX20_00480at 493.220 kb on + strand, within MPMX20_00480at 493.378 kb on + strand, within MPMX20_00480at 493.528 kb on - strandat 493.533 kb on + strandat 493.647 kb on + strandat 493.655 kb on - strandat 493.658 kb on + strandat 493.658 kb on + strandat 493.662 kb on + strandat 493.666 kb on - strandat 493.666 kb on - strandat 493.666 kb on - strandat 493.666 kb on - strandat 493.695 kb on - strandat 493.701 kb on - strandat 493.722 kb on + strand, within MPMX20_00481at 493.732 kb on + strand, within MPMX20_00481

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
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491,427 + +0.6
491,430 - -0.4
491,435 - MPMX20_00476 0.11 -1.1
491,435 - MPMX20_00476 0.11 -0.0
491,435 - MPMX20_00476 0.11 +1.0
491,435 - MPMX20_00476 0.11 -0.5
491,435 - MPMX20_00476 0.11 -0.5
491,464 + MPMX20_00476 0.21 +0.0
491,471 + MPMX20_00476 0.24 -0.7
491,472 - MPMX20_00476 0.24 +4.4
491,553 + MPMX20_00476 0.53 -1.3
491,564 + MPMX20_00476 0.57 +0.5
491,564 + MPMX20_00476 0.57 -0.6
491,564 + MPMX20_00476 0.57 -1.1
491,564 + MPMX20_00476 0.57 +0.5
491,564 + MPMX20_00476 0.57 -0.9
491,571 + MPMX20_00476 0.60 +1.4
491,572 - MPMX20_00476 0.60 +3.6
491,572 - MPMX20_00476 0.60 +2.8
491,572 - MPMX20_00476 0.60 +1.0
491,572 - MPMX20_00476 0.60 -0.3
491,572 - MPMX20_00476 0.60 +1.8
491,572 - MPMX20_00476 0.60 +0.5
491,572 - MPMX20_00476 0.60 -1.2
491,574 - MPMX20_00476 0.61 -1.1
491,589 + MPMX20_00476 0.66 -0.9
491,638 - MPMX20_00476 0.84 -1.6
491,638 - MPMX20_00476 0.84 -2.1
491,638 - MPMX20_00476 0.84 -2.4
491,638 - MPMX20_00476 0.84 -0.0
491,638 - MPMX20_00476 0.84 +1.2
491,640 + MPMX20_00476 0.85 +0.7
491,690 + +0.8
491,690 + -0.7
491,690 + -0.2
491,690 + +0.2
491,690 + -1.5
491,692 + -0.7
491,697 + -1.6
491,698 - -2.2
491,698 - -0.8
491,698 - +1.0
491,707 + -0.2
491,707 + +0.4
491,715 - -0.3
491,715 - +0.7
491,722 - +0.8
491,727 - -1.7
491,849 + -0.5
491,856 - +0.0
491,859 + -2.1
491,859 + -0.7
491,862 - +0.2
492,280 + MPMX20_00477 0.65 +2.8
492,328 + MPMX20_00477 0.77 +1.0
492,445 + -0.7
493,043 + +1.2
493,066 + MPMX20_00480 0.12 +0.6
493,072 + MPMX20_00480 0.13 +1.4
493,111 + MPMX20_00480 0.22 -0.7
493,111 + MPMX20_00480 0.22 +1.5
493,220 + MPMX20_00480 0.46 +2.8
493,378 + MPMX20_00480 0.81 -0.3
493,528 - -0.0
493,533 + -2.3
493,647 + -0.8
493,655 - -1.0
493,658 + +0.1
493,658 + -0.6
493,662 + -1.5
493,666 - -2.3
493,666 - +0.6
493,666 - -0.2
493,666 - +1.5
493,695 - +0.8
493,701 - -1.3
493,722 + MPMX20_00481 0.12 -1.4
493,732 + MPMX20_00481 0.13 -0.2

Or see this region's nucleotide sequence