Experiment: 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00257 and MPMX20_00258 are separated by 154 nucleotides MPMX20_00258 and MPMX20_00259 are separated by 108 nucleotides MPMX20_00259 and MPMX20_00260 are separated by 63 nucleotides
MPMX20_00257: MPMX20_00257 - Glycerol-3-phosphate acyltransferase, at 274,588 to 277,008
_00257
MPMX20_00258: MPMX20_00258 - Diacylglycerol kinase, at 277,163 to 277,531
_00258
MPMX20_00259: MPMX20_00259 - LexA repressor, at 277,640 to 278,248
_00259
MPMX20_00260: MPMX20_00260 - DNA damage-inducible protein F, at 278,312 to 279,649
_00260
Position (kb) 277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 277.060 kb on - strand at 277.087 kb on + strand at 277.087 kb on - strand at 277.094 kb on + strand at 277.102 kb on - strand at 277.104 kb on + strand at 277.123 kb on - strand at 277.128 kb on - strand at 277.174 kb on - strand at 277.176 kb on + strand at 277.189 kb on - strand at 277.195 kb on + strand at 277.195 kb on + strand at 277.203 kb on - strand, within MPMX20_00258 at 277.203 kb on - strand, within MPMX20_00258 at 277.235 kb on + strand, within MPMX20_00258 at 277.235 kb on + strand, within MPMX20_00258 at 277.243 kb on - strand, within MPMX20_00258 at 277.344 kb on + strand, within MPMX20_00258 at 277.344 kb on + strand, within MPMX20_00258 at 277.344 kb on + strand, within MPMX20_00258 at 277.352 kb on - strand, within MPMX20_00258 at 277.352 kb on - strand, within MPMX20_00258 at 277.352 kb on - strand, within MPMX20_00258 at 277.354 kb on + strand, within MPMX20_00258 at 277.396 kb on - strand, within MPMX20_00258 at 277.438 kb on - strand, within MPMX20_00258 at 277.450 kb on - strand, within MPMX20_00258 at 277.456 kb on - strand, within MPMX20_00258 at 277.458 kb on - strand, within MPMX20_00258 at 277.458 kb on - strand, within MPMX20_00258 at 277.495 kb on + strand at 277.500 kb on + strand at 277.510 kb on + strand at 278.269 kb on + strand at 278.274 kb on + strand at 278.274 kb on + strand at 278.274 kb on + strand at 278.282 kb on - strand at 278.284 kb on + strand at 278.392 kb on + strand at 278.512 kb on + strand, within MPMX20_00260 at 278.529 kb on + strand, within MPMX20_00260
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 remove 277,060 - +1.2 277,087 + -0.1 277,087 - +1.8 277,094 + +1.2 277,102 - +1.3 277,104 + -2.7 277,123 - -1.0 277,128 - -0.4 277,174 - -0.2 277,176 + +0.2 277,189 - -1.2 277,195 + +0.5 277,195 + +1.2 277,203 - MPMX20_00258 0.11 -0.8 277,203 - MPMX20_00258 0.11 -2.0 277,235 + MPMX20_00258 0.20 -0.5 277,235 + MPMX20_00258 0.20 -1.4 277,243 - MPMX20_00258 0.22 -0.5 277,344 + MPMX20_00258 0.49 +0.5 277,344 + MPMX20_00258 0.49 -0.0 277,344 + MPMX20_00258 0.49 -0.4 277,352 - MPMX20_00258 0.51 +1.0 277,352 - MPMX20_00258 0.51 -1.0 277,352 - MPMX20_00258 0.51 +0.5 277,354 + MPMX20_00258 0.52 -1.5 277,396 - MPMX20_00258 0.63 -1.5 277,438 - MPMX20_00258 0.75 -1.9 277,450 - MPMX20_00258 0.78 +0.2 277,456 - MPMX20_00258 0.79 +0.8 277,458 - MPMX20_00258 0.80 -1.0 277,458 - MPMX20_00258 0.80 -0.4 277,495 + -0.5 277,500 + -2.7 277,510 + +1.2 278,269 + +2.8 278,274 + -0.0 278,274 + -0.3 278,274 + -1.0 278,282 - -0.2 278,284 + -0.2 278,392 + -2.9 278,512 + MPMX20_00260 0.15 +0.5 278,529 + MPMX20_00260 0.16 -0.2
Or see this region's nucleotide sequence