Experiment: 0.1X LB plate, 1:1 coculture with Enterobacter ludwigii PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03144 and MPMX20_03145 overlap by 1 nucleotides MPMX20_03145 and MPMX20_03146 are separated by 1 nucleotides
MPMX20_03144: MPMX20_03144 - Inner membrane ABC transporter permease protein YejB, at 3,305,658 to 3,306,752
_03144
MPMX20_03145: MPMX20_03145 - Inner membrane ABC transporter permease protein YejE, at 3,306,752 to 3,307,777
_03145
MPMX20_03146: MPMX20_03146 - putative ABC transporter ATP-binding protein YejF, at 3,307,779 to 3,309,368
_03146
Position (kb)
3306
3307
3308 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3305.807 kb on + strand, within MPMX20_03144 at 3305.984 kb on - strand, within MPMX20_03144 at 3306.070 kb on + strand, within MPMX20_03144 at 3306.070 kb on + strand, within MPMX20_03144 at 3306.072 kb on - strand, within MPMX20_03144 at 3306.072 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.125 kb on + strand, within MPMX20_03144 at 3306.143 kb on - strand, within MPMX20_03144 at 3306.159 kb on + strand, within MPMX20_03144 at 3306.159 kb on + strand, within MPMX20_03144 at 3306.167 kb on - strand, within MPMX20_03144 at 3306.167 kb on - strand, within MPMX20_03144 at 3306.277 kb on - strand, within MPMX20_03144 at 3306.310 kb on - strand, within MPMX20_03144 at 3306.442 kb on - strand, within MPMX20_03144 at 3306.507 kb on - strand, within MPMX20_03144 at 3306.509 kb on + strand, within MPMX20_03144 at 3306.575 kb on + strand, within MPMX20_03144 at 3306.657 kb on + strand at 3306.657 kb on + strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.717 kb on - strand at 3306.717 kb on - strand at 3306.869 kb on - strand, within MPMX20_03145 at 3306.924 kb on - strand, within MPMX20_03145 at 3307.016 kb on - strand, within MPMX20_03145 at 3307.031 kb on - strand, within MPMX20_03145 at 3307.127 kb on + strand, within MPMX20_03145 at 3307.159 kb on + strand, within MPMX20_03145 at 3307.241 kb on + strand, within MPMX20_03145 at 3307.246 kb on + strand, within MPMX20_03145 at 3307.379 kb on + strand, within MPMX20_03145 at 3307.461 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.471 kb on - strand, within MPMX20_03145 at 3307.521 kb on - strand, within MPMX20_03145 at 3307.563 kb on + strand, within MPMX20_03145 at 3307.605 kb on + strand, within MPMX20_03145 at 3307.632 kb on + strand, within MPMX20_03145 at 3307.780 kb on - strand at 3307.798 kb on + strand at 3307.800 kb on + strand at 3307.832 kb on + strand at 3307.890 kb on - strand at 3307.890 kb on - strand at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.302 kb on + strand, within MPMX20_03146 at 3308.324 kb on + strand, within MPMX20_03146 at 3308.332 kb on - strand, within MPMX20_03146 at 3308.403 kb on + strand, within MPMX20_03146 at 3308.538 kb on - strand, within MPMX20_03146 at 3308.538 kb on - strand, within MPMX20_03146 at 3308.558 kb on + strand, within MPMX20_03146 at 3308.735 kb on - strand, within MPMX20_03146 at 3308.764 kb on + strand, within MPMX20_03146 at 3308.766 kb on - strand, within MPMX20_03146 at 3308.772 kb on + strand, within MPMX20_03146 at 3308.772 kb on - strand, within MPMX20_03146
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Enterobacter ludwigii PH2 remove 3,305,807 + MPMX20_03144 0.14 -0.1 3,305,984 - MPMX20_03144 0.30 -0.4 3,306,070 + MPMX20_03144 0.38 -0.9 3,306,070 + MPMX20_03144 0.38 +0.4 3,306,072 - MPMX20_03144 0.38 +3.1 3,306,072 - MPMX20_03144 0.38 -1.6 3,306,078 - MPMX20_03144 0.38 -0.3 3,306,078 - MPMX20_03144 0.38 +0.4 3,306,078 - MPMX20_03144 0.38 -0.9 3,306,078 - MPMX20_03144 0.38 -2.2 3,306,125 + MPMX20_03144 0.43 -0.6 3,306,143 - MPMX20_03144 0.44 +1.5 3,306,159 + MPMX20_03144 0.46 +0.6 3,306,159 + MPMX20_03144 0.46 -0.9 3,306,167 - MPMX20_03144 0.46 -1.8 3,306,167 - MPMX20_03144 0.46 +0.1 3,306,277 - MPMX20_03144 0.57 +0.1 3,306,310 - MPMX20_03144 0.60 -0.3 3,306,442 - MPMX20_03144 0.72 -0.1 3,306,507 - MPMX20_03144 0.78 +0.1 3,306,509 + MPMX20_03144 0.78 -2.1 3,306,575 + MPMX20_03144 0.84 -1.1 3,306,657 + -0.8 3,306,657 + +0.2 3,306,665 - -1.4 3,306,665 - -0.7 3,306,665 - -0.3 3,306,665 - +0.1 3,306,665 - +2.9 3,306,665 - +3.1 3,306,717 - -0.9 3,306,717 - -0.3 3,306,869 - MPMX20_03145 0.11 -3.0 3,306,924 - MPMX20_03145 0.17 -2.4 3,307,016 - MPMX20_03145 0.26 +0.8 3,307,031 - MPMX20_03145 0.27 +1.0 3,307,127 + MPMX20_03145 0.37 -1.2 3,307,159 + MPMX20_03145 0.40 +0.5 3,307,241 + MPMX20_03145 0.48 +0.5 3,307,246 + MPMX20_03145 0.48 +0.9 3,307,379 + MPMX20_03145 0.61 +1.8 3,307,461 + MPMX20_03145 0.69 -2.1 3,307,463 + MPMX20_03145 0.69 -1.6 3,307,463 + MPMX20_03145 0.69 -0.3 3,307,463 + MPMX20_03145 0.69 +0.1 3,307,463 + MPMX20_03145 0.69 -0.1 3,307,471 - MPMX20_03145 0.70 -0.8 3,307,521 - MPMX20_03145 0.75 +1.7 3,307,563 + MPMX20_03145 0.79 -0.8 3,307,605 + MPMX20_03145 0.83 -0.7 3,307,632 + MPMX20_03145 0.86 -0.1 3,307,780 - +2.5 3,307,798 + -1.4 3,307,800 + +1.1 3,307,832 + +0.3 3,307,890 - -3.1 3,307,890 - -0.1 3,308,089 + MPMX20_03146 0.19 -0.6 3,308,089 + MPMX20_03146 0.19 -0.7 3,308,089 + MPMX20_03146 0.19 -0.4 3,308,089 + MPMX20_03146 0.19 -0.8 3,308,097 - MPMX20_03146 0.20 -1.1 3,308,097 - MPMX20_03146 0.20 +0.7 3,308,097 - MPMX20_03146 0.20 -0.9 3,308,097 - MPMX20_03146 0.20 -1.2 3,308,097 - MPMX20_03146 0.20 -1.3 3,308,302 + MPMX20_03146 0.33 -0.8 3,308,324 + MPMX20_03146 0.34 +1.5 3,308,332 - MPMX20_03146 0.35 +0.8 3,308,403 + MPMX20_03146 0.39 +0.7 3,308,538 - MPMX20_03146 0.48 +0.0 3,308,538 - MPMX20_03146 0.48 -1.0 3,308,558 + MPMX20_03146 0.49 +1.1 3,308,735 - MPMX20_03146 0.60 -1.1 3,308,764 + MPMX20_03146 0.62 +2.6 3,308,766 - MPMX20_03146 0.62 -0.8 3,308,772 + MPMX20_03146 0.62 +0.3 3,308,772 - MPMX20_03146 0.62 +0.0
Or see this region's nucleotide sequence