Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02362

Experiment: 0.1X LB plate, 1:1 coculture with Enterobacter ludwigii PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02360 and MPMX20_02361 are separated by 26 nucleotidesMPMX20_02361 and MPMX20_02362 are separated by 153 nucleotidesMPMX20_02362 and MPMX20_02363 are separated by 23 nucleotidesMPMX20_02363 and MPMX20_02364 are separated by 127 nucleotides MPMX20_02360: MPMX20_02360 - putative D,D-dipeptide transport ATP-binding protein DdpF, at 2,488,432 to 2,489,364 _02360 MPMX20_02361: MPMX20_02361 - Glucose 1-dehydrogenase, at 2,489,391 to 2,490,140 _02361 MPMX20_02362: MPMX20_02362 - HTH-type transcriptional regulator PgrR, at 2,490,294 to 2,491,199 _02362 MPMX20_02363: MPMX20_02363 - Peroxiredoxin OsmC, at 2,491,223 to 2,491,651 _02363 MPMX20_02364: MPMX20_02364 - hypothetical protein, at 2,491,779 to 2,492,738 _02364 Position (kb) 2490 2491 2492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2489.321 kb on - strandat 2489.321 kb on - strandat 2489.321 kb on - strandat 2489.333 kb on - strandat 2489.333 kb on - strandat 2489.372 kb on + strandat 2489.372 kb on + strandat 2489.538 kb on - strand, within MPMX20_02361at 2489.576 kb on + strand, within MPMX20_02361at 2489.576 kb on + strand, within MPMX20_02361at 2489.576 kb on + strand, within MPMX20_02361at 2489.584 kb on - strand, within MPMX20_02361at 2489.602 kb on - strand, within MPMX20_02361at 2489.602 kb on - strand, within MPMX20_02361at 2489.602 kb on - strand, within MPMX20_02361at 2489.608 kb on + strand, within MPMX20_02361at 2489.616 kb on - strand, within MPMX20_02361at 2489.630 kb on + strand, within MPMX20_02361at 2489.723 kb on + strand, within MPMX20_02361at 2489.723 kb on + strand, within MPMX20_02361at 2489.723 kb on + strand, within MPMX20_02361at 2489.723 kb on + strand, within MPMX20_02361at 2489.723 kb on + strand, within MPMX20_02361at 2489.731 kb on - strand, within MPMX20_02361at 2489.731 kb on - strand, within MPMX20_02361at 2489.731 kb on - strand, within MPMX20_02361at 2489.731 kb on - strand, within MPMX20_02361at 2489.785 kb on + strand, within MPMX20_02361at 2489.787 kb on + strand, within MPMX20_02361at 2489.789 kb on + strand, within MPMX20_02361at 2489.789 kb on + strand, within MPMX20_02361at 2489.793 kb on - strand, within MPMX20_02361at 2489.793 kb on - strand, within MPMX20_02361at 2489.795 kb on - strand, within MPMX20_02361at 2489.795 kb on - strand, within MPMX20_02361at 2489.795 kb on - strand, within MPMX20_02361at 2489.797 kb on - strand, within MPMX20_02361at 2489.853 kb on - strand, within MPMX20_02361at 2489.856 kb on - strand, within MPMX20_02361at 2489.892 kb on + strand, within MPMX20_02361at 2489.975 kb on - strand, within MPMX20_02361at 2490.034 kb on + strand, within MPMX20_02361at 2490.042 kb on - strand, within MPMX20_02361at 2490.048 kb on + strand, within MPMX20_02361at 2490.075 kb on + strandat 2490.081 kb on + strandat 2490.089 kb on - strandat 2490.091 kb on + strandat 2490.100 kb on + strandat 2490.100 kb on + strandat 2490.108 kb on - strandat 2490.108 kb on - strandat 2490.141 kb on - strandat 2490.157 kb on - strandat 2490.157 kb on - strandat 2490.182 kb on + strandat 2490.214 kb on + strandat 2490.237 kb on - strandat 2490.292 kb on + strandat 2490.297 kb on + strandat 2490.297 kb on + strandat 2490.302 kb on + strandat 2490.302 kb on + strandat 2490.302 kb on + strandat 2490.302 kb on + strandat 2490.302 kb on + strandat 2490.302 kb on + strandat 2490.310 kb on - strandat 2490.310 kb on - strandat 2490.310 kb on - strandat 2490.310 kb on - strandat 2490.310 kb on - strandat 2490.310 kb on - strandat 2490.319 kb on + strandat 2490.385 kb on - strand, within MPMX20_02362at 2490.388 kb on + strand, within MPMX20_02362at 2490.435 kb on + strand, within MPMX20_02362at 2490.448 kb on + strand, within MPMX20_02362at 2490.517 kb on + strand, within MPMX20_02362at 2490.582 kb on + strand, within MPMX20_02362at 2490.582 kb on + strand, within MPMX20_02362at 2490.582 kb on + strand, within MPMX20_02362at 2490.592 kb on + strand, within MPMX20_02362at 2490.600 kb on - strand, within MPMX20_02362at 2490.600 kb on - strand, within MPMX20_02362at 2490.654 kb on - strand, within MPMX20_02362at 2490.664 kb on + strand, within MPMX20_02362at 2490.750 kb on - strand, within MPMX20_02362at 2490.775 kb on - strand, within MPMX20_02362at 2490.782 kb on + strand, within MPMX20_02362at 2490.822 kb on + strand, within MPMX20_02362at 2490.822 kb on + strand, within MPMX20_02362at 2490.848 kb on - strand, within MPMX20_02362at 2490.853 kb on + strand, within MPMX20_02362at 2490.861 kb on - strand, within MPMX20_02362at 2490.861 kb on - strand, within MPMX20_02362at 2490.888 kb on + strand, within MPMX20_02362at 2490.936 kb on - strand, within MPMX20_02362at 2490.952 kb on + strand, within MPMX20_02362at 2490.952 kb on + strand, within MPMX20_02362at 2490.952 kb on + strand, within MPMX20_02362at 2490.952 kb on + strand, within MPMX20_02362at 2490.958 kb on - strand, within MPMX20_02362at 2490.960 kb on - strand, within MPMX20_02362at 2490.960 kb on - strand, within MPMX20_02362at 2490.963 kb on + strand, within MPMX20_02362at 2491.007 kb on - strand, within MPMX20_02362at 2491.011 kb on + strand, within MPMX20_02362at 2491.058 kb on - strand, within MPMX20_02362at 2491.063 kb on + strand, within MPMX20_02362at 2491.086 kb on + strand, within MPMX20_02362at 2491.093 kb on - strand, within MPMX20_02362at 2491.162 kb on + strandat 2491.233 kb on + strandat 2491.313 kb on - strand, within MPMX20_02363at 2491.334 kb on - strand, within MPMX20_02363at 2491.336 kb on + strand, within MPMX20_02363at 2491.344 kb on - strand, within MPMX20_02363at 2491.344 kb on - strand, within MPMX20_02363at 2491.344 kb on - strand, within MPMX20_02363at 2491.346 kb on + strand, within MPMX20_02363at 2491.349 kb on - strand, within MPMX20_02363at 2491.354 kb on - strand, within MPMX20_02363at 2491.414 kb on + strand, within MPMX20_02363at 2491.436 kb on - strand, within MPMX20_02363at 2491.440 kb on + strand, within MPMX20_02363at 2491.450 kb on + strand, within MPMX20_02363at 2491.458 kb on - strand, within MPMX20_02363at 2491.499 kb on - strand, within MPMX20_02363at 2491.556 kb on - strand, within MPMX20_02363at 2491.582 kb on - strand, within MPMX20_02363at 2491.612 kb on + strandat 2491.620 kb on - strandat 2491.632 kb on - strandat 2491.632 kb on - strandat 2491.632 kb on - strandat 2491.661 kb on + strandat 2491.677 kb on + strandat 2491.677 kb on + strandat 2491.684 kb on + strandat 2491.685 kb on - strandat 2491.691 kb on - strandat 2491.696 kb on + strandat 2491.704 kb on - strandat 2491.707 kb on + strandat 2491.707 kb on + strandat 2491.774 kb on + strandat 2491.782 kb on - strandat 2491.814 kb on - strandat 2491.844 kb on - strandat 2491.882 kb on + strand, within MPMX20_02364at 2491.890 kb on - strand, within MPMX20_02364at 2491.919 kb on + strand, within MPMX20_02364at 2491.938 kb on + strand, within MPMX20_02364at 2491.953 kb on + strand, within MPMX20_02364at 2491.956 kb on - strand, within MPMX20_02364at 2491.995 kb on - strand, within MPMX20_02364at 2492.012 kb on + strand, within MPMX20_02364at 2492.012 kb on + strand, within MPMX20_02364at 2492.019 kb on - strand, within MPMX20_02364at 2492.078 kb on + strand, within MPMX20_02364at 2492.082 kb on + strand, within MPMX20_02364at 2492.109 kb on + strand, within MPMX20_02364at 2492.111 kb on + strand, within MPMX20_02364at 2492.143 kb on + strand, within MPMX20_02364at 2492.166 kb on + strand, within MPMX20_02364at 2492.166 kb on + strand, within MPMX20_02364at 2492.166 kb on + strand, within MPMX20_02364at 2492.168 kb on - strand, within MPMX20_02364at 2492.174 kb on - strand, within MPMX20_02364at 2492.174 kb on - strand, within MPMX20_02364at 2492.175 kb on - strand, within MPMX20_02364at 2492.184 kb on - strand, within MPMX20_02364

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Enterobacter ludwigii PH2
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2,489,321 - -0.1
2,489,321 - +0.6
2,489,321 - +1.0
2,489,333 - +0.3
2,489,333 - +0.9
2,489,372 + -0.7
2,489,372 + +0.4
2,489,538 - MPMX20_02361 0.20 +0.4
2,489,576 + MPMX20_02361 0.25 -0.5
2,489,576 + MPMX20_02361 0.25 +0.1
2,489,576 + MPMX20_02361 0.25 -1.5
2,489,584 - MPMX20_02361 0.26 -1.5
2,489,602 - MPMX20_02361 0.28 +0.1
2,489,602 - MPMX20_02361 0.28 +0.7
2,489,602 - MPMX20_02361 0.28 +0.1
2,489,608 + MPMX20_02361 0.29 -0.3
2,489,616 - MPMX20_02361 0.30 -0.6
2,489,630 + MPMX20_02361 0.32 -0.4
2,489,723 + MPMX20_02361 0.44 -0.2
2,489,723 + MPMX20_02361 0.44 +0.4
2,489,723 + MPMX20_02361 0.44 -0.3
2,489,723 + MPMX20_02361 0.44 +0.1
2,489,723 + MPMX20_02361 0.44 +0.4
2,489,731 - MPMX20_02361 0.45 -0.1
2,489,731 - MPMX20_02361 0.45 +1.4
2,489,731 - MPMX20_02361 0.45 +0.1
2,489,731 - MPMX20_02361 0.45 -1.2
2,489,785 + MPMX20_02361 0.53 -2.6
2,489,787 + MPMX20_02361 0.53 -0.5
2,489,789 + MPMX20_02361 0.53 -0.3
2,489,789 + MPMX20_02361 0.53 -1.4
2,489,793 - MPMX20_02361 0.54 -1.3
2,489,793 - MPMX20_02361 0.54 +0.1
2,489,795 - MPMX20_02361 0.54 +1.7
2,489,795 - MPMX20_02361 0.54 +0.7
2,489,795 - MPMX20_02361 0.54 -0.6
2,489,797 - MPMX20_02361 0.54 -0.3
2,489,853 - MPMX20_02361 0.62 -0.9
2,489,856 - MPMX20_02361 0.62 +0.1
2,489,892 + MPMX20_02361 0.67 +0.2
2,489,975 - MPMX20_02361 0.78 -0.4
2,490,034 + MPMX20_02361 0.86 -0.2
2,490,042 - MPMX20_02361 0.87 +0.7
2,490,048 + MPMX20_02361 0.88 -0.7
2,490,075 + +2.0
2,490,081 + +0.9
2,490,089 - +0.4
2,490,091 + -0.5
2,490,100 + +0.7
2,490,100 + -0.8
2,490,108 - +1.2
2,490,108 - +1.1
2,490,141 - -1.4
2,490,157 - -0.7
2,490,157 - -0.6
2,490,182 + -1.0
2,490,214 + -0.7
2,490,237 - -0.5
2,490,292 + +3.4
2,490,297 + +1.2
2,490,297 + +0.6
2,490,302 + -2.4
2,490,302 + -2.1
2,490,302 + +0.0
2,490,302 + -0.7
2,490,302 + -1.2
2,490,302 + -0.5
2,490,310 - -1.3
2,490,310 - +0.1
2,490,310 - +1.6
2,490,310 - -0.6
2,490,310 - +0.2
2,490,310 - -1.0
2,490,319 + +0.2
2,490,385 - MPMX20_02362 0.10 +2.3
2,490,388 + MPMX20_02362 0.10 +0.9
2,490,435 + MPMX20_02362 0.16 -2.4
2,490,448 + MPMX20_02362 0.17 +0.1
2,490,517 + MPMX20_02362 0.25 +2.7
2,490,582 + MPMX20_02362 0.32 +0.9
2,490,582 + MPMX20_02362 0.32 +0.5
2,490,582 + MPMX20_02362 0.32 +0.9
2,490,592 + MPMX20_02362 0.33 -0.5
2,490,600 - MPMX20_02362 0.34 -2.0
2,490,600 - MPMX20_02362 0.34 -0.0
2,490,654 - MPMX20_02362 0.40 +0.1
2,490,664 + MPMX20_02362 0.41 -2.1
2,490,750 - MPMX20_02362 0.50 +0.3
2,490,775 - MPMX20_02362 0.53 -1.6
2,490,782 + MPMX20_02362 0.54 -0.6
2,490,822 + MPMX20_02362 0.58 +1.1
2,490,822 + MPMX20_02362 0.58 -0.6
2,490,848 - MPMX20_02362 0.61 -0.6
2,490,853 + MPMX20_02362 0.62 +0.0
2,490,861 - MPMX20_02362 0.63 +1.4
2,490,861 - MPMX20_02362 0.63 +0.3
2,490,888 + MPMX20_02362 0.66 +0.5
2,490,936 - MPMX20_02362 0.71 +0.4
2,490,952 + MPMX20_02362 0.73 +0.5
2,490,952 + MPMX20_02362 0.73 -0.6
2,490,952 + MPMX20_02362 0.73 +0.5
2,490,952 + MPMX20_02362 0.73 +0.7
2,490,958 - MPMX20_02362 0.73 +1.0
2,490,960 - MPMX20_02362 0.74 -0.1
2,490,960 - MPMX20_02362 0.74 +0.1
2,490,963 + MPMX20_02362 0.74 +1.0
2,491,007 - MPMX20_02362 0.79 +0.4
2,491,011 + MPMX20_02362 0.79 -0.5
2,491,058 - MPMX20_02362 0.84 +0.4
2,491,063 + MPMX20_02362 0.85 +2.4
2,491,086 + MPMX20_02362 0.87 -0.9
2,491,093 - MPMX20_02362 0.88 -2.2
2,491,162 + +1.7
2,491,233 + +0.6
2,491,313 - MPMX20_02363 0.21 -0.7
2,491,334 - MPMX20_02363 0.26 -1.1
2,491,336 + MPMX20_02363 0.26 -1.7
2,491,344 - MPMX20_02363 0.28 +0.6
2,491,344 - MPMX20_02363 0.28 -0.3
2,491,344 - MPMX20_02363 0.28 -0.3
2,491,346 + MPMX20_02363 0.29 -0.8
2,491,349 - MPMX20_02363 0.29 -0.2
2,491,354 - MPMX20_02363 0.31 -0.4
2,491,414 + MPMX20_02363 0.45 +1.8
2,491,436 - MPMX20_02363 0.50 -2.8
2,491,440 + MPMX20_02363 0.51 -0.3
2,491,450 + MPMX20_02363 0.53 -1.3
2,491,458 - MPMX20_02363 0.55 -2.6
2,491,499 - MPMX20_02363 0.64 -0.2
2,491,556 - MPMX20_02363 0.78 -1.6
2,491,582 - MPMX20_02363 0.84 -1.2
2,491,612 + -1.6
2,491,620 - -0.8
2,491,632 - -1.2
2,491,632 - +0.3
2,491,632 - -0.2
2,491,661 + +2.1
2,491,677 + +0.1
2,491,677 + -0.5
2,491,684 + -1.0
2,491,685 - -0.9
2,491,691 - -0.6
2,491,696 + -1.0
2,491,704 - +0.4
2,491,707 + +3.0
2,491,707 + -0.8
2,491,774 + +1.3
2,491,782 - -1.1
2,491,814 - +1.4
2,491,844 - +0.0
2,491,882 + MPMX20_02364 0.11 -0.8
2,491,890 - MPMX20_02364 0.12 +0.8
2,491,919 + MPMX20_02364 0.15 +0.3
2,491,938 + MPMX20_02364 0.17 +0.8
2,491,953 + MPMX20_02364 0.18 -0.6
2,491,956 - MPMX20_02364 0.18 -0.1
2,491,995 - MPMX20_02364 0.23 -0.6
2,492,012 + MPMX20_02364 0.24 -1.4
2,492,012 + MPMX20_02364 0.24 -0.6
2,492,019 - MPMX20_02364 0.25 -0.4
2,492,078 + MPMX20_02364 0.31 +0.8
2,492,082 + MPMX20_02364 0.32 -1.2
2,492,109 + MPMX20_02364 0.34 +0.3
2,492,111 + MPMX20_02364 0.35 -1.5
2,492,143 + MPMX20_02364 0.38 +0.2
2,492,166 + MPMX20_02364 0.40 +0.2
2,492,166 + MPMX20_02364 0.40 -0.6
2,492,166 + MPMX20_02364 0.40 -0.7
2,492,168 - MPMX20_02364 0.41 -1.3
2,492,174 - MPMX20_02364 0.41 -0.4
2,492,174 - MPMX20_02364 0.41 -1.7
2,492,175 - MPMX20_02364 0.41 +3.8
2,492,184 - MPMX20_02364 0.42 +0.4

Or see this region's nucleotide sequence