Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02211

Experiment: TSB plate, 1:1 coculture with Enterobacter ludwigii PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02210 and MPMX20_02211 are separated by 57 nucleotidesMPMX20_02211 and MPMX20_02212 are separated by 282 nucleotides MPMX20_02210: MPMX20_02210 - Methyl-accepting chemotaxis protein III, at 2,321,120 to 2,322,811 _02210 MPMX20_02211: MPMX20_02211 - Quinate/shikimate dehydrogenase (quinone), at 2,322,869 to 2,325,250 _02211 MPMX20_02212: MPMX20_02212 - HTH-type transcriptional regulator GbpR, at 2,325,533 to 2,326,456 _02212 Position (kb) 2322 2323 2324 2325 2326Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2321.953 kb on + strand, within MPMX20_02210at 2321.954 kb on - strand, within MPMX20_02210at 2322.000 kb on + strand, within MPMX20_02210at 2322.157 kb on + strand, within MPMX20_02210at 2322.233 kb on - strand, within MPMX20_02210at 2322.370 kb on - strand, within MPMX20_02210at 2322.377 kb on - strand, within MPMX20_02210at 2322.516 kb on + strand, within MPMX20_02210at 2322.556 kb on - strand, within MPMX20_02210at 2322.561 kb on + strand, within MPMX20_02210at 2322.674 kb on + strandat 2322.679 kb on + strandat 2322.712 kb on + strandat 2322.719 kb on - strandat 2322.734 kb on - strandat 2322.735 kb on + strandat 2322.738 kb on - strandat 2322.761 kb on + strandat 2322.761 kb on + strandat 2322.769 kb on - strandat 2322.769 kb on - strandat 2322.771 kb on - strandat 2322.813 kb on - strandat 2322.934 kb on + strandat 2323.063 kb on + strandat 2323.108 kb on - strand, within MPMX20_02211at 2323.113 kb on - strand, within MPMX20_02211at 2323.150 kb on + strand, within MPMX20_02211at 2323.156 kb on - strand, within MPMX20_02211at 2323.174 kb on + strand, within MPMX20_02211at 2323.181 kb on + strand, within MPMX20_02211at 2323.191 kb on + strand, within MPMX20_02211at 2323.308 kb on + strand, within MPMX20_02211at 2323.316 kb on - strand, within MPMX20_02211at 2323.392 kb on - strand, within MPMX20_02211at 2323.468 kb on - strand, within MPMX20_02211at 2323.482 kb on - strand, within MPMX20_02211at 2323.567 kb on + strand, within MPMX20_02211at 2323.674 kb on + strand, within MPMX20_02211at 2323.674 kb on + strand, within MPMX20_02211at 2323.674 kb on + strand, within MPMX20_02211at 2323.682 kb on - strand, within MPMX20_02211at 2323.682 kb on - strand, within MPMX20_02211at 2323.769 kb on + strand, within MPMX20_02211at 2323.769 kb on + strand, within MPMX20_02211at 2323.772 kb on - strand, within MPMX20_02211at 2323.791 kb on + strand, within MPMX20_02211at 2323.869 kb on - strand, within MPMX20_02211at 2324.005 kb on - strand, within MPMX20_02211at 2324.021 kb on + strand, within MPMX20_02211at 2324.024 kb on - strand, within MPMX20_02211at 2324.024 kb on - strand, within MPMX20_02211at 2324.055 kb on + strand, within MPMX20_02211at 2324.055 kb on + strand, within MPMX20_02211at 2324.060 kb on + strand, within MPMX20_02211at 2324.068 kb on - strand, within MPMX20_02211at 2324.068 kb on - strand, within MPMX20_02211at 2324.108 kb on - strand, within MPMX20_02211at 2324.130 kb on + strand, within MPMX20_02211at 2324.150 kb on + strand, within MPMX20_02211at 2324.172 kb on + strand, within MPMX20_02211at 2324.172 kb on + strand, within MPMX20_02211at 2324.180 kb on - strand, within MPMX20_02211at 2324.230 kb on + strand, within MPMX20_02211at 2324.230 kb on + strand, within MPMX20_02211at 2324.238 kb on - strand, within MPMX20_02211at 2324.284 kb on + strand, within MPMX20_02211at 2324.292 kb on - strand, within MPMX20_02211at 2324.292 kb on - strand, within MPMX20_02211at 2324.292 kb on - strand, within MPMX20_02211at 2324.300 kb on - strand, within MPMX20_02211at 2324.313 kb on + strand, within MPMX20_02211at 2324.452 kb on + strand, within MPMX20_02211at 2324.455 kb on - strand, within MPMX20_02211at 2324.471 kb on + strand, within MPMX20_02211at 2324.501 kb on - strand, within MPMX20_02211at 2324.543 kb on + strand, within MPMX20_02211at 2324.558 kb on + strand, within MPMX20_02211at 2324.599 kb on - strand, within MPMX20_02211at 2324.599 kb on - strand, within MPMX20_02211at 2324.607 kb on - strand, within MPMX20_02211at 2324.646 kb on + strand, within MPMX20_02211at 2324.654 kb on - strand, within MPMX20_02211at 2324.654 kb on - strand, within MPMX20_02211at 2324.734 kb on - strand, within MPMX20_02211at 2324.880 kb on + strand, within MPMX20_02211at 2324.907 kb on - strand, within MPMX20_02211at 2324.942 kb on + strand, within MPMX20_02211at 2325.154 kb on - strandat 2325.211 kb on + strandat 2325.219 kb on - strandat 2325.219 kb on - strandat 2325.226 kb on - strandat 2325.505 kb on + strandat 2325.505 kb on + strandat 2325.510 kb on + strandat 2325.513 kb on - strandat 2325.558 kb on + strandat 2325.558 kb on + strandat 2325.566 kb on - strandat 2325.566 kb on - strandat 2325.566 kb on - strandat 2325.579 kb on + strandat 2325.579 kb on + strandat 2325.587 kb on - strandat 2325.587 kb on - strandat 2325.587 kb on - strandat 2325.587 kb on - strandat 2325.587 kb on - strandat 2325.587 kb on - strandat 2325.613 kb on - strandat 2325.650 kb on - strand, within MPMX20_02212at 2325.650 kb on - strand, within MPMX20_02212at 2325.725 kb on - strand, within MPMX20_02212at 2325.771 kb on + strand, within MPMX20_02212at 2325.783 kb on + strand, within MPMX20_02212at 2325.786 kb on - strand, within MPMX20_02212at 2325.789 kb on + strand, within MPMX20_02212at 2325.791 kb on - strand, within MPMX20_02212at 2325.807 kb on + strand, within MPMX20_02212at 2325.930 kb on - strand, within MPMX20_02212at 2325.954 kb on - strand, within MPMX20_02212at 2325.970 kb on + strand, within MPMX20_02212at 2326.033 kb on + strand, within MPMX20_02212at 2326.046 kb on - strand, within MPMX20_02212at 2326.046 kb on - strand, within MPMX20_02212at 2326.060 kb on + strand, within MPMX20_02212at 2326.063 kb on - strand, within MPMX20_02212at 2326.065 kb on - strand, within MPMX20_02212at 2326.081 kb on - strand, within MPMX20_02212at 2326.194 kb on + strand, within MPMX20_02212at 2326.207 kb on - strand, within MPMX20_02212

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter ludwigii PH2
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2,321,953 + MPMX20_02210 0.49 -2.0
2,321,954 - MPMX20_02210 0.49 -1.2
2,322,000 + MPMX20_02210 0.52 -1.5
2,322,157 + MPMX20_02210 0.61 -0.7
2,322,233 - MPMX20_02210 0.66 -1.6
2,322,370 - MPMX20_02210 0.74 -0.1
2,322,377 - MPMX20_02210 0.74 +0.1
2,322,516 + MPMX20_02210 0.83 +0.4
2,322,556 - MPMX20_02210 0.85 +0.2
2,322,561 + MPMX20_02210 0.85 +0.2
2,322,674 + +0.5
2,322,679 + -1.9
2,322,712 + -1.0
2,322,719 - +0.6
2,322,734 - -1.8
2,322,735 + -1.3
2,322,738 - +0.9
2,322,761 + -0.4
2,322,761 + -0.2
2,322,769 - -1.1
2,322,769 - -0.8
2,322,771 - -1.0
2,322,813 - +1.5
2,322,934 + -0.3
2,323,063 + -0.2
2,323,108 - MPMX20_02211 0.10 -0.4
2,323,113 - MPMX20_02211 0.10 -1.5
2,323,150 + MPMX20_02211 0.12 -0.7
2,323,156 - MPMX20_02211 0.12 -1.2
2,323,174 + MPMX20_02211 0.13 -1.4
2,323,181 + MPMX20_02211 0.13 -1.9
2,323,191 + MPMX20_02211 0.14 +0.9
2,323,308 + MPMX20_02211 0.18 -2.5
2,323,316 - MPMX20_02211 0.19 +1.5
2,323,392 - MPMX20_02211 0.22 -0.4
2,323,468 - MPMX20_02211 0.25 -0.4
2,323,482 - MPMX20_02211 0.26 -0.8
2,323,567 + MPMX20_02211 0.29 -0.7
2,323,674 + MPMX20_02211 0.34 +0.2
2,323,674 + MPMX20_02211 0.34 +1.9
2,323,674 + MPMX20_02211 0.34 -0.8
2,323,682 - MPMX20_02211 0.34 -1.2
2,323,682 - MPMX20_02211 0.34 -0.1
2,323,769 + MPMX20_02211 0.38 -0.8
2,323,769 + MPMX20_02211 0.38 -0.2
2,323,772 - MPMX20_02211 0.38 -1.0
2,323,791 + MPMX20_02211 0.39 +1.2
2,323,869 - MPMX20_02211 0.42 -1.7
2,324,005 - MPMX20_02211 0.48 -0.6
2,324,021 + MPMX20_02211 0.48 +0.2
2,324,024 - MPMX20_02211 0.48 -0.6
2,324,024 - MPMX20_02211 0.48 -0.7
2,324,055 + MPMX20_02211 0.50 -0.6
2,324,055 + MPMX20_02211 0.50 +1.5
2,324,060 + MPMX20_02211 0.50 +0.2
2,324,068 - MPMX20_02211 0.50 -0.8
2,324,068 - MPMX20_02211 0.50 -0.1
2,324,108 - MPMX20_02211 0.52 +0.5
2,324,130 + MPMX20_02211 0.53 -1.8
2,324,150 + MPMX20_02211 0.54 -1.8
2,324,172 + MPMX20_02211 0.55 -1.1
2,324,172 + MPMX20_02211 0.55 -0.4
2,324,180 - MPMX20_02211 0.55 -1.3
2,324,230 + MPMX20_02211 0.57 +1.2
2,324,230 + MPMX20_02211 0.57 -1.8
2,324,238 - MPMX20_02211 0.57 -0.9
2,324,284 + MPMX20_02211 0.59 -0.7
2,324,292 - MPMX20_02211 0.60 -0.3
2,324,292 - MPMX20_02211 0.60 -1.9
2,324,292 - MPMX20_02211 0.60 -0.1
2,324,300 - MPMX20_02211 0.60 +0.2
2,324,313 + MPMX20_02211 0.61 +0.2
2,324,452 + MPMX20_02211 0.66 +0.2
2,324,455 - MPMX20_02211 0.67 +0.3
2,324,471 + MPMX20_02211 0.67 -0.0
2,324,501 - MPMX20_02211 0.69 +0.7
2,324,543 + MPMX20_02211 0.70 +1.6
2,324,558 + MPMX20_02211 0.71 -0.1
2,324,599 - MPMX20_02211 0.73 -2.0
2,324,599 - MPMX20_02211 0.73 -0.1
2,324,607 - MPMX20_02211 0.73 -0.1
2,324,646 + MPMX20_02211 0.75 -2.6
2,324,654 - MPMX20_02211 0.75 -0.5
2,324,654 - MPMX20_02211 0.75 +0.5
2,324,734 - MPMX20_02211 0.78 -1.6
2,324,880 + MPMX20_02211 0.84 +1.5
2,324,907 - MPMX20_02211 0.86 -1.7
2,324,942 + MPMX20_02211 0.87 +0.4
2,325,154 - -1.6
2,325,211 + -1.3
2,325,219 - -0.9
2,325,219 - +4.1
2,325,226 - -0.5
2,325,505 + +0.0
2,325,505 + -2.4
2,325,510 + +0.6
2,325,513 - -0.5
2,325,558 + +1.5
2,325,558 + -1.3
2,325,566 - +0.6
2,325,566 - -0.1
2,325,566 - -0.3
2,325,579 + +0.6
2,325,579 + -0.3
2,325,587 - -1.6
2,325,587 - -0.4
2,325,587 - -0.1
2,325,587 - -0.1
2,325,587 - -2.3
2,325,587 - -0.9
2,325,613 - -1.0
2,325,650 - MPMX20_02212 0.13 +1.1
2,325,650 - MPMX20_02212 0.13 -1.6
2,325,725 - MPMX20_02212 0.21 +0.4
2,325,771 + MPMX20_02212 0.26 -0.6
2,325,783 + MPMX20_02212 0.27 -0.7
2,325,786 - MPMX20_02212 0.27 -0.9
2,325,789 + MPMX20_02212 0.28 -0.3
2,325,791 - MPMX20_02212 0.28 +0.7
2,325,807 + MPMX20_02212 0.30 -0.6
2,325,930 - MPMX20_02212 0.43 -0.9
2,325,954 - MPMX20_02212 0.46 -1.6
2,325,970 + MPMX20_02212 0.47 -1.6
2,326,033 + MPMX20_02212 0.54 -2.6
2,326,046 - MPMX20_02212 0.56 +1.4
2,326,046 - MPMX20_02212 0.56 +1.5
2,326,060 + MPMX20_02212 0.57 +0.6
2,326,063 - MPMX20_02212 0.57 -0.1
2,326,065 - MPMX20_02212 0.58 +0.2
2,326,081 - MPMX20_02212 0.59 +0.4
2,326,194 + MPMX20_02212 0.72 -0.3
2,326,207 - MPMX20_02212 0.73 +0.2

Or see this region's nucleotide sequence