Experiment: TSB plate, 1:1 coculture with Enterobacter ludwigii PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02210 and MPMX20_02211 are separated by 57 nucleotides MPMX20_02211 and MPMX20_02212 are separated by 282 nucleotides
MPMX20_02210: MPMX20_02210 - Methyl-accepting chemotaxis protein III, at 2,321,120 to 2,322,811
_02210
MPMX20_02211: MPMX20_02211 - Quinate/shikimate dehydrogenase (quinone), at 2,322,869 to 2,325,250
_02211
MPMX20_02212: MPMX20_02212 - HTH-type transcriptional regulator GbpR, at 2,325,533 to 2,326,456
_02212
Position (kb)
2322
2323
2324
2325
2326 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2321.953 kb on + strand, within MPMX20_02210 at 2321.954 kb on - strand, within MPMX20_02210 at 2322.000 kb on + strand, within MPMX20_02210 at 2322.157 kb on + strand, within MPMX20_02210 at 2322.233 kb on - strand, within MPMX20_02210 at 2322.370 kb on - strand, within MPMX20_02210 at 2322.377 kb on - strand, within MPMX20_02210 at 2322.516 kb on + strand, within MPMX20_02210 at 2322.556 kb on - strand, within MPMX20_02210 at 2322.561 kb on + strand, within MPMX20_02210 at 2322.674 kb on + strand at 2322.679 kb on + strand at 2322.712 kb on + strand at 2322.719 kb on - strand at 2322.734 kb on - strand at 2322.735 kb on + strand at 2322.738 kb on - strand at 2322.761 kb on + strand at 2322.761 kb on + strand at 2322.769 kb on - strand at 2322.769 kb on - strand at 2322.771 kb on - strand at 2322.813 kb on - strand at 2322.934 kb on + strand at 2323.063 kb on + strand at 2323.108 kb on - strand, within MPMX20_02211 at 2323.113 kb on - strand, within MPMX20_02211 at 2323.150 kb on + strand, within MPMX20_02211 at 2323.156 kb on - strand, within MPMX20_02211 at 2323.174 kb on + strand, within MPMX20_02211 at 2323.181 kb on + strand, within MPMX20_02211 at 2323.191 kb on + strand, within MPMX20_02211 at 2323.308 kb on + strand, within MPMX20_02211 at 2323.316 kb on - strand, within MPMX20_02211 at 2323.392 kb on - strand, within MPMX20_02211 at 2323.468 kb on - strand, within MPMX20_02211 at 2323.482 kb on - strand, within MPMX20_02211 at 2323.567 kb on + strand, within MPMX20_02211 at 2323.674 kb on + strand, within MPMX20_02211 at 2323.674 kb on + strand, within MPMX20_02211 at 2323.674 kb on + strand, within MPMX20_02211 at 2323.682 kb on - strand, within MPMX20_02211 at 2323.682 kb on - strand, within MPMX20_02211 at 2323.769 kb on + strand, within MPMX20_02211 at 2323.769 kb on + strand, within MPMX20_02211 at 2323.772 kb on - strand, within MPMX20_02211 at 2323.791 kb on + strand, within MPMX20_02211 at 2323.869 kb on - strand, within MPMX20_02211 at 2324.005 kb on - strand, within MPMX20_02211 at 2324.021 kb on + strand, within MPMX20_02211 at 2324.024 kb on - strand, within MPMX20_02211 at 2324.024 kb on - strand, within MPMX20_02211 at 2324.055 kb on + strand, within MPMX20_02211 at 2324.055 kb on + strand, within MPMX20_02211 at 2324.060 kb on + strand, within MPMX20_02211 at 2324.068 kb on - strand, within MPMX20_02211 at 2324.068 kb on - strand, within MPMX20_02211 at 2324.108 kb on - strand, within MPMX20_02211 at 2324.130 kb on + strand, within MPMX20_02211 at 2324.150 kb on + strand, within MPMX20_02211 at 2324.172 kb on + strand, within MPMX20_02211 at 2324.172 kb on + strand, within MPMX20_02211 at 2324.180 kb on - strand, within MPMX20_02211 at 2324.230 kb on + strand, within MPMX20_02211 at 2324.230 kb on + strand, within MPMX20_02211 at 2324.238 kb on - strand, within MPMX20_02211 at 2324.284 kb on + strand, within MPMX20_02211 at 2324.292 kb on - strand, within MPMX20_02211 at 2324.292 kb on - strand, within MPMX20_02211 at 2324.292 kb on - strand, within MPMX20_02211 at 2324.300 kb on - strand, within MPMX20_02211 at 2324.313 kb on + strand, within MPMX20_02211 at 2324.452 kb on + strand, within MPMX20_02211 at 2324.455 kb on - strand, within MPMX20_02211 at 2324.471 kb on + strand, within MPMX20_02211 at 2324.501 kb on - strand, within MPMX20_02211 at 2324.543 kb on + strand, within MPMX20_02211 at 2324.558 kb on + strand, within MPMX20_02211 at 2324.599 kb on - strand, within MPMX20_02211 at 2324.599 kb on - strand, within MPMX20_02211 at 2324.607 kb on - strand, within MPMX20_02211 at 2324.646 kb on + strand, within MPMX20_02211 at 2324.654 kb on - strand, within MPMX20_02211 at 2324.654 kb on - strand, within MPMX20_02211 at 2324.734 kb on - strand, within MPMX20_02211 at 2324.880 kb on + strand, within MPMX20_02211 at 2324.907 kb on - strand, within MPMX20_02211 at 2324.942 kb on + strand, within MPMX20_02211 at 2325.154 kb on - strand at 2325.211 kb on + strand at 2325.219 kb on - strand at 2325.219 kb on - strand at 2325.226 kb on - strand at 2325.505 kb on + strand at 2325.505 kb on + strand at 2325.510 kb on + strand at 2325.513 kb on - strand at 2325.558 kb on + strand at 2325.558 kb on + strand at 2325.566 kb on - strand at 2325.566 kb on - strand at 2325.566 kb on - strand at 2325.579 kb on + strand at 2325.579 kb on + strand at 2325.587 kb on - strand at 2325.587 kb on - strand at 2325.587 kb on - strand at 2325.587 kb on - strand at 2325.587 kb on - strand at 2325.587 kb on - strand at 2325.613 kb on - strand at 2325.650 kb on - strand, within MPMX20_02212 at 2325.650 kb on - strand, within MPMX20_02212 at 2325.725 kb on - strand, within MPMX20_02212 at 2325.771 kb on + strand, within MPMX20_02212 at 2325.783 kb on + strand, within MPMX20_02212 at 2325.786 kb on - strand, within MPMX20_02212 at 2325.789 kb on + strand, within MPMX20_02212 at 2325.791 kb on - strand, within MPMX20_02212 at 2325.807 kb on + strand, within MPMX20_02212 at 2325.930 kb on - strand, within MPMX20_02212 at 2325.954 kb on - strand, within MPMX20_02212 at 2325.970 kb on + strand, within MPMX20_02212 at 2326.033 kb on + strand, within MPMX20_02212 at 2326.046 kb on - strand, within MPMX20_02212 at 2326.046 kb on - strand, within MPMX20_02212 at 2326.060 kb on + strand, within MPMX20_02212 at 2326.063 kb on - strand, within MPMX20_02212 at 2326.065 kb on - strand, within MPMX20_02212 at 2326.081 kb on - strand, within MPMX20_02212 at 2326.194 kb on + strand, within MPMX20_02212 at 2326.207 kb on - strand, within MPMX20_02212
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter ludwigii PH2 remove 2,321,953 + MPMX20_02210 0.49 -2.0 2,321,954 - MPMX20_02210 0.49 -1.2 2,322,000 + MPMX20_02210 0.52 -1.5 2,322,157 + MPMX20_02210 0.61 -0.7 2,322,233 - MPMX20_02210 0.66 -1.6 2,322,370 - MPMX20_02210 0.74 -0.1 2,322,377 - MPMX20_02210 0.74 +0.1 2,322,516 + MPMX20_02210 0.83 +0.4 2,322,556 - MPMX20_02210 0.85 +0.2 2,322,561 + MPMX20_02210 0.85 +0.2 2,322,674 + +0.5 2,322,679 + -1.9 2,322,712 + -1.0 2,322,719 - +0.6 2,322,734 - -1.8 2,322,735 + -1.3 2,322,738 - +0.9 2,322,761 + -0.4 2,322,761 + -0.2 2,322,769 - -1.1 2,322,769 - -0.8 2,322,771 - -1.0 2,322,813 - +1.5 2,322,934 + -0.3 2,323,063 + -0.2 2,323,108 - MPMX20_02211 0.10 -0.4 2,323,113 - MPMX20_02211 0.10 -1.5 2,323,150 + MPMX20_02211 0.12 -0.7 2,323,156 - MPMX20_02211 0.12 -1.2 2,323,174 + MPMX20_02211 0.13 -1.4 2,323,181 + MPMX20_02211 0.13 -1.9 2,323,191 + MPMX20_02211 0.14 +0.9 2,323,308 + MPMX20_02211 0.18 -2.5 2,323,316 - MPMX20_02211 0.19 +1.5 2,323,392 - MPMX20_02211 0.22 -0.4 2,323,468 - MPMX20_02211 0.25 -0.4 2,323,482 - MPMX20_02211 0.26 -0.8 2,323,567 + MPMX20_02211 0.29 -0.7 2,323,674 + MPMX20_02211 0.34 +0.2 2,323,674 + MPMX20_02211 0.34 +1.9 2,323,674 + MPMX20_02211 0.34 -0.8 2,323,682 - MPMX20_02211 0.34 -1.2 2,323,682 - MPMX20_02211 0.34 -0.1 2,323,769 + MPMX20_02211 0.38 -0.8 2,323,769 + MPMX20_02211 0.38 -0.2 2,323,772 - MPMX20_02211 0.38 -1.0 2,323,791 + MPMX20_02211 0.39 +1.2 2,323,869 - MPMX20_02211 0.42 -1.7 2,324,005 - MPMX20_02211 0.48 -0.6 2,324,021 + MPMX20_02211 0.48 +0.2 2,324,024 - MPMX20_02211 0.48 -0.6 2,324,024 - MPMX20_02211 0.48 -0.7 2,324,055 + MPMX20_02211 0.50 -0.6 2,324,055 + MPMX20_02211 0.50 +1.5 2,324,060 + MPMX20_02211 0.50 +0.2 2,324,068 - MPMX20_02211 0.50 -0.8 2,324,068 - MPMX20_02211 0.50 -0.1 2,324,108 - MPMX20_02211 0.52 +0.5 2,324,130 + MPMX20_02211 0.53 -1.8 2,324,150 + MPMX20_02211 0.54 -1.8 2,324,172 + MPMX20_02211 0.55 -1.1 2,324,172 + MPMX20_02211 0.55 -0.4 2,324,180 - MPMX20_02211 0.55 -1.3 2,324,230 + MPMX20_02211 0.57 +1.2 2,324,230 + MPMX20_02211 0.57 -1.8 2,324,238 - MPMX20_02211 0.57 -0.9 2,324,284 + MPMX20_02211 0.59 -0.7 2,324,292 - MPMX20_02211 0.60 -0.3 2,324,292 - MPMX20_02211 0.60 -1.9 2,324,292 - MPMX20_02211 0.60 -0.1 2,324,300 - MPMX20_02211 0.60 +0.2 2,324,313 + MPMX20_02211 0.61 +0.2 2,324,452 + MPMX20_02211 0.66 +0.2 2,324,455 - MPMX20_02211 0.67 +0.3 2,324,471 + MPMX20_02211 0.67 -0.0 2,324,501 - MPMX20_02211 0.69 +0.7 2,324,543 + MPMX20_02211 0.70 +1.6 2,324,558 + MPMX20_02211 0.71 -0.1 2,324,599 - MPMX20_02211 0.73 -2.0 2,324,599 - MPMX20_02211 0.73 -0.1 2,324,607 - MPMX20_02211 0.73 -0.1 2,324,646 + MPMX20_02211 0.75 -2.6 2,324,654 - MPMX20_02211 0.75 -0.5 2,324,654 - MPMX20_02211 0.75 +0.5 2,324,734 - MPMX20_02211 0.78 -1.6 2,324,880 + MPMX20_02211 0.84 +1.5 2,324,907 - MPMX20_02211 0.86 -1.7 2,324,942 + MPMX20_02211 0.87 +0.4 2,325,154 - -1.6 2,325,211 + -1.3 2,325,219 - -0.9 2,325,219 - +4.1 2,325,226 - -0.5 2,325,505 + +0.0 2,325,505 + -2.4 2,325,510 + +0.6 2,325,513 - -0.5 2,325,558 + +1.5 2,325,558 + -1.3 2,325,566 - +0.6 2,325,566 - -0.1 2,325,566 - -0.3 2,325,579 + +0.6 2,325,579 + -0.3 2,325,587 - -1.6 2,325,587 - -0.4 2,325,587 - -0.1 2,325,587 - -0.1 2,325,587 - -2.3 2,325,587 - -0.9 2,325,613 - -1.0 2,325,650 - MPMX20_02212 0.13 +1.1 2,325,650 - MPMX20_02212 0.13 -1.6 2,325,725 - MPMX20_02212 0.21 +0.4 2,325,771 + MPMX20_02212 0.26 -0.6 2,325,783 + MPMX20_02212 0.27 -0.7 2,325,786 - MPMX20_02212 0.27 -0.9 2,325,789 + MPMX20_02212 0.28 -0.3 2,325,791 - MPMX20_02212 0.28 +0.7 2,325,807 + MPMX20_02212 0.30 -0.6 2,325,930 - MPMX20_02212 0.43 -0.9 2,325,954 - MPMX20_02212 0.46 -1.6 2,325,970 + MPMX20_02212 0.47 -1.6 2,326,033 + MPMX20_02212 0.54 -2.6 2,326,046 - MPMX20_02212 0.56 +1.4 2,326,046 - MPMX20_02212 0.56 +1.5 2,326,060 + MPMX20_02212 0.57 +0.6 2,326,063 - MPMX20_02212 0.57 -0.1 2,326,065 - MPMX20_02212 0.58 +0.2 2,326,081 - MPMX20_02212 0.59 +0.4 2,326,194 + MPMX20_02212 0.72 -0.3 2,326,207 - MPMX20_02212 0.73 +0.2
Or see this region's nucleotide sequence