Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00260

Experiment: TSB plate, 1:1 coculture with Enterobacter ludwigii PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00258 and MPMX20_00259 are separated by 108 nucleotidesMPMX20_00259 and MPMX20_00260 are separated by 63 nucleotidesMPMX20_00260 and MPMX20_00261 are separated by 119 nucleotidesMPMX20_00261 and MPMX20_00262 are separated by 48 nucleotides MPMX20_00258: MPMX20_00258 - Diacylglycerol kinase, at 277,163 to 277,531 _00258 MPMX20_00259: MPMX20_00259 - LexA repressor, at 277,640 to 278,248 _00259 MPMX20_00260: MPMX20_00260 - DNA damage-inducible protein F, at 278,312 to 279,649 _00260 MPMX20_00261: MPMX20_00261 - hypothetical protein, at 279,769 to 279,978 _00261 MPMX20_00262: MPMX20_00262 - Zinc uptake regulation protein, at 280,027 to 280,539 _00262 Position (kb) 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 277.344 kb on + strand, within MPMX20_00258at 277.344 kb on + strand, within MPMX20_00258at 277.344 kb on + strand, within MPMX20_00258at 277.352 kb on - strand, within MPMX20_00258at 277.352 kb on - strand, within MPMX20_00258at 277.352 kb on - strand, within MPMX20_00258at 277.354 kb on + strand, within MPMX20_00258at 277.396 kb on - strand, within MPMX20_00258at 277.438 kb on - strand, within MPMX20_00258at 277.450 kb on - strand, within MPMX20_00258at 277.456 kb on - strand, within MPMX20_00258at 277.458 kb on - strand, within MPMX20_00258at 277.458 kb on - strand, within MPMX20_00258at 277.495 kb on + strandat 277.500 kb on + strandat 277.510 kb on + strandat 278.269 kb on + strandat 278.274 kb on + strandat 278.274 kb on + strandat 278.274 kb on + strandat 278.282 kb on - strandat 278.284 kb on + strandat 278.392 kb on + strandat 278.512 kb on + strand, within MPMX20_00260at 278.529 kb on + strand, within MPMX20_00260at 278.585 kb on + strand, within MPMX20_00260at 278.587 kb on - strand, within MPMX20_00260at 278.587 kb on - strand, within MPMX20_00260at 278.600 kb on - strand, within MPMX20_00260at 278.624 kb on + strand, within MPMX20_00260at 278.664 kb on - strand, within MPMX20_00260at 278.681 kb on + strand, within MPMX20_00260at 278.777 kb on + strand, within MPMX20_00260at 278.785 kb on - strand, within MPMX20_00260at 278.848 kb on + strand, within MPMX20_00260at 278.903 kb on + strand, within MPMX20_00260at 278.935 kb on + strand, within MPMX20_00260at 278.943 kb on - strand, within MPMX20_00260at 278.943 kb on - strand, within MPMX20_00260at 278.946 kb on + strand, within MPMX20_00260at 278.977 kb on + strand, within MPMX20_00260at 278.985 kb on - strand, within MPMX20_00260at 278.985 kb on - strand, within MPMX20_00260at 279.030 kb on + strand, within MPMX20_00260at 279.053 kb on - strand, within MPMX20_00260at 279.144 kb on + strand, within MPMX20_00260at 279.182 kb on + strand, within MPMX20_00260at 279.202 kb on + strand, within MPMX20_00260at 279.211 kb on - strand, within MPMX20_00260at 279.212 kb on - strand, within MPMX20_00260at 279.261 kb on + strand, within MPMX20_00260at 279.269 kb on - strand, within MPMX20_00260at 279.292 kb on + strand, within MPMX20_00260at 279.292 kb on + strand, within MPMX20_00260at 279.300 kb on - strand, within MPMX20_00260at 279.339 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.458 kb on - strand, within MPMX20_00260at 279.458 kb on - strand, within MPMX20_00260at 279.494 kb on + strand, within MPMX20_00260at 279.494 kb on + strand, within MPMX20_00260at 279.496 kb on - strand, within MPMX20_00260at 279.505 kb on + strand, within MPMX20_00260at 279.584 kb on + strandat 279.619 kb on - strandat 279.747 kb on + strandat 279.774 kb on - strandat 279.794 kb on + strand, within MPMX20_00261at 279.804 kb on + strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.818 kb on + strand, within MPMX20_00261at 279.837 kb on + strand, within MPMX20_00261at 279.837 kb on + strand, within MPMX20_00261at 279.837 kb on + strand, within MPMX20_00261at 279.904 kb on + strand, within MPMX20_00261at 279.904 kb on + strand, within MPMX20_00261at 279.904 kb on + strand, within MPMX20_00261at 279.912 kb on - strand, within MPMX20_00261at 280.040 kb on + strandat 280.050 kb on + strandat 280.098 kb on - strand, within MPMX20_00262at 280.213 kb on - strand, within MPMX20_00262at 280.221 kb on - strand, within MPMX20_00262at 280.284 kb on + strand, within MPMX20_00262at 280.292 kb on - strand, within MPMX20_00262at 280.292 kb on - strand, within MPMX20_00262at 280.402 kb on - strand, within MPMX20_00262at 280.404 kb on + strand, within MPMX20_00262at 280.428 kb on + strand, within MPMX20_00262at 280.436 kb on - strand, within MPMX20_00262at 280.491 kb on - strandat 280.497 kb on + strandat 280.505 kb on - strandat 280.531 kb on - strandat 280.546 kb on + strandat 280.554 kb on + strandat 280.562 kb on - strandat 280.576 kb on + strandat 280.607 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.627 kb on - strandat 280.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter ludwigii PH2
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277,344 + MPMX20_00258 0.49 +1.3
277,344 + MPMX20_00258 0.49 -0.2
277,344 + MPMX20_00258 0.49 -0.6
277,352 - MPMX20_00258 0.51 -0.2
277,352 - MPMX20_00258 0.51 -1.2
277,352 - MPMX20_00258 0.51 +0.3
277,354 + MPMX20_00258 0.52 -0.1
277,396 - MPMX20_00258 0.63 -1.6
277,438 - MPMX20_00258 0.75 -0.1
277,450 - MPMX20_00258 0.78 +0.0
277,456 - MPMX20_00258 0.79 +0.6
277,458 - MPMX20_00258 0.80 -1.2
277,458 - MPMX20_00258 0.80 -0.6
277,495 + -0.7
277,500 + -2.9
277,510 + +1.0
278,269 + +2.6
278,274 + -0.2
278,274 + +0.3
278,274 + -0.6
278,282 - -1.7
278,284 + -2.0
278,392 + -0.6
278,512 + MPMX20_00260 0.15 -0.1
278,529 + MPMX20_00260 0.16 -0.9
278,585 + MPMX20_00260 0.20 -0.5
278,587 - MPMX20_00260 0.21 +2.6
278,587 - MPMX20_00260 0.21 +1.4
278,600 - MPMX20_00260 0.22 +4.1
278,624 + MPMX20_00260 0.23 -1.8
278,664 - MPMX20_00260 0.26 +1.0
278,681 + MPMX20_00260 0.28 +0.3
278,777 + MPMX20_00260 0.35 +1.0
278,785 - MPMX20_00260 0.35 +0.3
278,848 + MPMX20_00260 0.40 +0.2
278,903 + MPMX20_00260 0.44 +0.8
278,935 + MPMX20_00260 0.47 +1.6
278,943 - MPMX20_00260 0.47 -1.6
278,943 - MPMX20_00260 0.47 -0.4
278,946 + MPMX20_00260 0.47 +0.6
278,977 + MPMX20_00260 0.50 -1.0
278,985 - MPMX20_00260 0.50 -0.3
278,985 - MPMX20_00260 0.50 +0.1
279,030 + MPMX20_00260 0.54 +2.6
279,053 - MPMX20_00260 0.55 -1.1
279,144 + MPMX20_00260 0.62 +3.4
279,182 + MPMX20_00260 0.65 +0.8
279,202 + MPMX20_00260 0.67 +1.0
279,211 - MPMX20_00260 0.67 +0.5
279,212 - MPMX20_00260 0.67 -0.5
279,261 + MPMX20_00260 0.71 +2.0
279,269 - MPMX20_00260 0.72 -1.6
279,292 + MPMX20_00260 0.73 +0.0
279,292 + MPMX20_00260 0.73 -1.8
279,300 - MPMX20_00260 0.74 -0.9
279,339 + MPMX20_00260 0.77 -0.4
279,450 + MPMX20_00260 0.85 +1.6
279,450 + MPMX20_00260 0.85 +0.7
279,450 + MPMX20_00260 0.85 -0.9
279,450 + MPMX20_00260 0.85 -1.8
279,458 - MPMX20_00260 0.86 -0.7
279,458 - MPMX20_00260 0.86 -1.5
279,494 + MPMX20_00260 0.88 +3.0
279,494 + MPMX20_00260 0.88 +0.0
279,496 - MPMX20_00260 0.88 -0.4
279,505 + MPMX20_00260 0.89 +1.0
279,584 + +1.9
279,619 - +0.6
279,747 + -0.9
279,774 - +1.0
279,794 + MPMX20_00261 0.12 +0.1
279,804 + MPMX20_00261 0.17 -0.8
279,812 - MPMX20_00261 0.20 +0.5
279,812 - MPMX20_00261 0.20 +3.2
279,812 - MPMX20_00261 0.20 -0.5
279,812 - MPMX20_00261 0.20 -0.4
279,812 - MPMX20_00261 0.20 +0.7
279,818 + MPMX20_00261 0.23 +1.0
279,837 + MPMX20_00261 0.32 -0.4
279,837 + MPMX20_00261 0.32 -0.6
279,837 + MPMX20_00261 0.32 -0.9
279,904 + MPMX20_00261 0.64 +0.2
279,904 + MPMX20_00261 0.64 -0.3
279,904 + MPMX20_00261 0.64 -0.3
279,912 - MPMX20_00261 0.68 +0.1
280,040 + -0.8
280,050 + -1.4
280,098 - MPMX20_00262 0.14 -0.5
280,213 - MPMX20_00262 0.36 +1.6
280,221 - MPMX20_00262 0.38 +0.1
280,284 + MPMX20_00262 0.50 +0.7
280,292 - MPMX20_00262 0.52 +4.6
280,292 - MPMX20_00262 0.52 -1.0
280,402 - MPMX20_00262 0.73 +3.0
280,404 + MPMX20_00262 0.73 -0.4
280,428 + MPMX20_00262 0.78 -1.5
280,436 - MPMX20_00262 0.80 +1.2
280,491 - -0.1
280,497 + -1.1
280,505 - +0.8
280,531 - +1.2
280,546 + -0.5
280,554 + +0.3
280,562 - +1.0
280,576 + +0.2
280,607 + -0.3
280,617 + -0.7
280,617 + +1.2
280,617 + +1.2
280,617 + -0.1
280,617 + -1.0
280,617 + -0.2
280,617 + -1.0
280,617 + +1.0
280,617 + +1.6
280,617 + +0.4
280,617 + +0.7
280,625 - +0.6
280,625 - -0.9
280,625 - +0.0
280,625 - +1.6
280,625 - +1.0
280,625 - +1.0
280,625 - -0.1
280,627 - -1.9
280,628 + +1.3

Or see this region's nucleotide sequence