Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24295

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24290 and AZOBR_RS24295 are separated by 53 nucleotidesAZOBR_RS24295 and AZOBR_RS24300 are separated by 201 nucleotides AZOBR_RS24290: AZOBR_RS24290 - ribonucleotide-diphosphate reductase subunit alpha, at 495,877 to 497,751 _RS24290 AZOBR_RS24295: AZOBR_RS24295 - ribonucleotide-diphosphate reductase subunit beta, at 497,805 to 498,896 _RS24295 AZOBR_RS24300: AZOBR_RS24300 - methylcitrate synthase, at 499,098 to 500,261 _RS24300 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1 2at 497.293 kb on + strand, within AZOBR_RS24290at 497.293 kb on + strand, within AZOBR_RS24290at 497.293 kb on + strand, within AZOBR_RS24290at 497.293 kb on + strand, within AZOBR_RS24290at 497.294 kb on - strand, within AZOBR_RS24290at 497.294 kb on - strand, within AZOBR_RS24290at 497.294 kb on - strand, within AZOBR_RS24290at 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.632 kb on + strandat 497.632 kb on + strandat 497.632 kb on + strandat 497.633 kb on - strandat 497.883 kb on + strandat 497.883 kb on + strandat 497.910 kb on + strandat 497.910 kb on + strandat 497.910 kb on + strandat 497.911 kb on - strandat 497.916 kb on + strand, within AZOBR_RS24295at 498.078 kb on + strand, within AZOBR_RS24295at 498.078 kb on + strand, within AZOBR_RS24295at 498.091 kb on - strand, within AZOBR_RS24295at 498.091 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.259 kb on - strand, within AZOBR_RS24295at 498.259 kb on - strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.634 kb on - strand, within AZOBR_RS24295at 498.634 kb on - strand, within AZOBR_RS24295at 498.678 kb on + strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.709 kb on - strand, within AZOBR_RS24295at 498.801 kb on + strandat 499.042 kb on + strandat 499.042 kb on + strandat 499.230 kb on + strand, within AZOBR_RS24300at 499.279 kb on - strand, within AZOBR_RS24300at 499.326 kb on + strand, within AZOBR_RS24300at 499.327 kb on - strand, within AZOBR_RS24300at 499.327 kb on - strand, within AZOBR_RS24300at 499.327 kb on - strand, within AZOBR_RS24300at 499.537 kb on - strand, within AZOBR_RS24300at 499.680 kb on + strand, within AZOBR_RS24300at 499.837 kb on - strand, within AZOBR_RS24300

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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497,293 + AZOBR_RS24290 0.76 -0.6
497,293 + AZOBR_RS24290 0.76 +0.1
497,293 + AZOBR_RS24290 0.76 -1.5
497,293 + AZOBR_RS24290 0.76 -1.7
497,294 - AZOBR_RS24290 0.76 +0.4
497,294 - AZOBR_RS24290 0.76 -0.4
497,294 - AZOBR_RS24290 0.76 -1.8
497,629 + +0.5
497,629 + -0.2
497,629 + -0.1
497,629 + -1.4
497,629 + -0.8
497,629 + -0.9
497,630 - -0.3
497,630 - -0.0
497,630 - -0.9
497,630 - +0.4
497,630 - -0.3
497,630 - +1.1
497,632 + +0.2
497,632 + -0.4
497,632 + +0.4
497,633 - +0.9
497,883 + -1.2
497,883 + -0.1
497,910 + +0.1
497,910 + -0.6
497,910 + +0.9
497,911 - +0.3
497,916 + AZOBR_RS24295 0.10 -0.1
498,078 + AZOBR_RS24295 0.25 -0.3
498,078 + AZOBR_RS24295 0.25 +0.2
498,091 - AZOBR_RS24295 0.26 -0.3
498,091 - AZOBR_RS24295 0.26 +0.5
498,172 - AZOBR_RS24295 0.34 -0.5
498,172 - AZOBR_RS24295 0.34 +0.4
498,172 - AZOBR_RS24295 0.34 +0.9
498,258 + AZOBR_RS24295 0.41 +0.4
498,258 + AZOBR_RS24295 0.41 -0.1
498,258 + AZOBR_RS24295 0.41 +0.3
498,258 + AZOBR_RS24295 0.41 -1.2
498,258 + AZOBR_RS24295 0.41 -0.7
498,258 + AZOBR_RS24295 0.41 +0.1
498,259 - AZOBR_RS24295 0.42 -0.3
498,259 - AZOBR_RS24295 0.42 +0.1
498,624 + AZOBR_RS24295 0.75 +1.9
498,624 + AZOBR_RS24295 0.75 +0.9
498,624 + AZOBR_RS24295 0.75 +0.0
498,625 - AZOBR_RS24295 0.75 -0.8
498,625 - AZOBR_RS24295 0.75 -0.3
498,625 - AZOBR_RS24295 0.75 -0.3
498,625 - AZOBR_RS24295 0.75 -1.1
498,633 + AZOBR_RS24295 0.76 -0.3
498,633 + AZOBR_RS24295 0.76 -0.1
498,633 + AZOBR_RS24295 0.76 -0.5
498,634 - AZOBR_RS24295 0.76 -0.1
498,634 - AZOBR_RS24295 0.76 +1.4
498,678 + AZOBR_RS24295 0.80 -2.1
498,679 - AZOBR_RS24295 0.80 -0.4
498,679 - AZOBR_RS24295 0.80 +0.4
498,679 - AZOBR_RS24295 0.80 +1.0
498,709 - AZOBR_RS24295 0.83 -0.1
498,801 + +0.2
499,042 + -1.5
499,042 + +0.2
499,230 + AZOBR_RS24300 0.11 -0.3
499,279 - AZOBR_RS24300 0.16 +0.0
499,326 + AZOBR_RS24300 0.20 -0.9
499,327 - AZOBR_RS24300 0.20 +0.4
499,327 - AZOBR_RS24300 0.20 -0.1
499,327 - AZOBR_RS24300 0.20 -0.3
499,537 - AZOBR_RS24300 0.38 -0.4
499,680 + AZOBR_RS24300 0.50 +0.2
499,837 - AZOBR_RS24300 0.63 -0.5

Or see this region's nucleotide sequence