Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24290

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24285 and AZOBR_RS22260 are separated by 143 nucleotidesAZOBR_RS22260 and AZOBR_RS24290 are separated by 154 nucleotidesAZOBR_RS24290 and AZOBR_RS24295 are separated by 53 nucleotides AZOBR_RS24285: AZOBR_RS24285 - hypothetical protein, at 495,073 to 495,330 _RS24285 AZOBR_RS22260: AZOBR_RS22260 - cobalamin, at 495,474 to 495,722 _RS22260 AZOBR_RS24290: AZOBR_RS24290 - ribonucleotide-diphosphate reductase subunit alpha, at 495,877 to 497,751 _RS24290 AZOBR_RS24295: AZOBR_RS24295 - ribonucleotide-diphosphate reductase subunit beta, at 497,805 to 498,896 _RS24295 Position (kb) 495 496 497 498Strain fitness (log2 ratio) -2 -1 0 1 2at 495.271 kb on + strand, within AZOBR_RS24285at 495.272 kb on - strand, within AZOBR_RS24285at 495.514 kb on + strand, within AZOBR_RS22260at 495.514 kb on + strand, within AZOBR_RS22260at 495.520 kb on + strand, within AZOBR_RS22260at 495.520 kb on + strand, within AZOBR_RS22260at 495.521 kb on - strand, within AZOBR_RS22260at 496.045 kb on + strandat 496.066 kb on + strand, within AZOBR_RS24290at 496.067 kb on - strand, within AZOBR_RS24290at 496.099 kb on + strand, within AZOBR_RS24290at 496.099 kb on + strand, within AZOBR_RS24290at 496.100 kb on - strand, within AZOBR_RS24290at 496.132 kb on + strand, within AZOBR_RS24290at 496.133 kb on - strand, within AZOBR_RS24290at 496.312 kb on + strand, within AZOBR_RS24290at 496.312 kb on + strand, within AZOBR_RS24290at 496.312 kb on + strand, within AZOBR_RS24290at 496.312 kb on + strand, within AZOBR_RS24290at 496.312 kb on + strand, within AZOBR_RS24290at 496.313 kb on - strand, within AZOBR_RS24290at 496.362 kb on + strand, within AZOBR_RS24290at 496.362 kb on + strand, within AZOBR_RS24290at 496.363 kb on - strand, within AZOBR_RS24290at 496.453 kb on + strand, within AZOBR_RS24290at 496.453 kb on + strand, within AZOBR_RS24290at 496.700 kb on - strand, within AZOBR_RS24290at 497.293 kb on + strand, within AZOBR_RS24290at 497.293 kb on + strand, within AZOBR_RS24290at 497.293 kb on + strand, within AZOBR_RS24290at 497.293 kb on + strand, within AZOBR_RS24290at 497.294 kb on - strand, within AZOBR_RS24290at 497.294 kb on - strand, within AZOBR_RS24290at 497.294 kb on - strand, within AZOBR_RS24290at 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.629 kb on + strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.630 kb on - strandat 497.632 kb on + strandat 497.632 kb on + strandat 497.632 kb on + strandat 497.633 kb on - strandat 497.883 kb on + strandat 497.883 kb on + strandat 497.910 kb on + strandat 497.910 kb on + strandat 497.910 kb on + strandat 497.911 kb on - strandat 497.916 kb on + strand, within AZOBR_RS24295at 498.078 kb on + strand, within AZOBR_RS24295at 498.078 kb on + strand, within AZOBR_RS24295at 498.091 kb on - strand, within AZOBR_RS24295at 498.091 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.259 kb on - strand, within AZOBR_RS24295at 498.259 kb on - strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.634 kb on - strand, within AZOBR_RS24295at 498.634 kb on - strand, within AZOBR_RS24295at 498.678 kb on + strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.709 kb on - strand, within AZOBR_RS24295

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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495,271 + AZOBR_RS24285 0.77 +0.0
495,272 - AZOBR_RS24285 0.77 +0.6
495,514 + AZOBR_RS22260 0.16 +1.7
495,514 + AZOBR_RS22260 0.16 +0.8
495,520 + AZOBR_RS22260 0.18 +0.5
495,520 + AZOBR_RS22260 0.18 +0.5
495,521 - AZOBR_RS22260 0.19 -0.5
496,045 + -0.1
496,066 + AZOBR_RS24290 0.10 -0.9
496,067 - AZOBR_RS24290 0.10 -0.1
496,099 + AZOBR_RS24290 0.12 +1.9
496,099 + AZOBR_RS24290 0.12 -0.2
496,100 - AZOBR_RS24290 0.12 -0.3
496,132 + AZOBR_RS24290 0.14 -0.6
496,133 - AZOBR_RS24290 0.14 -0.8
496,312 + AZOBR_RS24290 0.23 +0.1
496,312 + AZOBR_RS24290 0.23 -1.0
496,312 + AZOBR_RS24290 0.23 +0.9
496,312 + AZOBR_RS24290 0.23 +1.9
496,312 + AZOBR_RS24290 0.23 +0.4
496,313 - AZOBR_RS24290 0.23 -0.2
496,362 + AZOBR_RS24290 0.26 +1.9
496,362 + AZOBR_RS24290 0.26 -0.4
496,363 - AZOBR_RS24290 0.26 -1.0
496,453 + AZOBR_RS24290 0.31 +0.4
496,453 + AZOBR_RS24290 0.31 +0.4
496,700 - AZOBR_RS24290 0.44 +0.4
497,293 + AZOBR_RS24290 0.76 -0.6
497,293 + AZOBR_RS24290 0.76 +0.1
497,293 + AZOBR_RS24290 0.76 -1.5
497,293 + AZOBR_RS24290 0.76 -1.7
497,294 - AZOBR_RS24290 0.76 +0.4
497,294 - AZOBR_RS24290 0.76 -0.4
497,294 - AZOBR_RS24290 0.76 -1.8
497,629 + +0.5
497,629 + -0.2
497,629 + -0.1
497,629 + -1.4
497,629 + -0.8
497,629 + -0.9
497,630 - -0.3
497,630 - -0.0
497,630 - -0.9
497,630 - +0.4
497,630 - -0.3
497,630 - +1.1
497,632 + +0.2
497,632 + -0.4
497,632 + +0.4
497,633 - +0.9
497,883 + -1.2
497,883 + -0.1
497,910 + +0.1
497,910 + -0.6
497,910 + +0.9
497,911 - +0.3
497,916 + AZOBR_RS24295 0.10 -0.1
498,078 + AZOBR_RS24295 0.25 -0.3
498,078 + AZOBR_RS24295 0.25 +0.2
498,091 - AZOBR_RS24295 0.26 -0.3
498,091 - AZOBR_RS24295 0.26 +0.5
498,172 - AZOBR_RS24295 0.34 -0.5
498,172 - AZOBR_RS24295 0.34 +0.4
498,172 - AZOBR_RS24295 0.34 +0.9
498,258 + AZOBR_RS24295 0.41 +0.4
498,258 + AZOBR_RS24295 0.41 -0.1
498,258 + AZOBR_RS24295 0.41 +0.3
498,258 + AZOBR_RS24295 0.41 -1.2
498,258 + AZOBR_RS24295 0.41 -0.7
498,258 + AZOBR_RS24295 0.41 +0.1
498,259 - AZOBR_RS24295 0.42 -0.3
498,259 - AZOBR_RS24295 0.42 +0.1
498,624 + AZOBR_RS24295 0.75 +1.9
498,624 + AZOBR_RS24295 0.75 +0.9
498,624 + AZOBR_RS24295 0.75 +0.0
498,625 - AZOBR_RS24295 0.75 -0.8
498,625 - AZOBR_RS24295 0.75 -0.3
498,625 - AZOBR_RS24295 0.75 -0.3
498,625 - AZOBR_RS24295 0.75 -1.1
498,633 + AZOBR_RS24295 0.76 -0.3
498,633 + AZOBR_RS24295 0.76 -0.1
498,633 + AZOBR_RS24295 0.76 -0.5
498,634 - AZOBR_RS24295 0.76 -0.1
498,634 - AZOBR_RS24295 0.76 +1.4
498,678 + AZOBR_RS24295 0.80 -2.1
498,679 - AZOBR_RS24295 0.80 -0.4
498,679 - AZOBR_RS24295 0.80 +0.4
498,679 - AZOBR_RS24295 0.80 +1.0
498,709 - AZOBR_RS24295 0.83 -0.1

Or see this region's nucleotide sequence