Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03740

Experiment: 1-octen-3-ol 0.6784116667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03735 and AZOBR_RS03740 are separated by 374 nucleotidesAZOBR_RS03740 and AZOBR_RS03745 are separated by 21 nucleotides AZOBR_RS03735: AZOBR_RS03735 - hypothetical protein, at 786,615 to 787,226 _RS03735 AZOBR_RS03740: AZOBR_RS03740 - protein tyrosine phosphatase, at 787,601 to 788,179 _RS03740 AZOBR_RS03745: AZOBR_RS03745 - DNA polymerase, at 788,201 to 791,485 _RS03745 Position (kb) 787 788 789Strain fitness (log2 ratio) -2 -1 0 1at 786.807 kb on + strand, within AZOBR_RS03735at 786.808 kb on - strand, within AZOBR_RS03735at 786.808 kb on - strand, within AZOBR_RS03735at 786.808 kb on - strand, within AZOBR_RS03735at 786.828 kb on + strand, within AZOBR_RS03735at 786.829 kb on - strand, within AZOBR_RS03735at 787.048 kb on - strand, within AZOBR_RS03735at 787.463 kb on + strandat 787.491 kb on + strandat 787.491 kb on + strandat 787.491 kb on + strandat 787.492 kb on - strandat 787.787 kb on + strand, within AZOBR_RS03740at 787.787 kb on + strand, within AZOBR_RS03740at 787.787 kb on + strand, within AZOBR_RS03740at 787.787 kb on + strand, within AZOBR_RS03740at 787.788 kb on - strand, within AZOBR_RS03740at 787.788 kb on - strand, within AZOBR_RS03740at 787.788 kb on - strand, within AZOBR_RS03740at 787.788 kb on - strand, within AZOBR_RS03740at 787.788 kb on - strand, within AZOBR_RS03740at 788.099 kb on + strand, within AZOBR_RS03740at 788.650 kb on - strand, within AZOBR_RS03745at 789.097 kb on + strand, within AZOBR_RS03745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
remove
786,807 + AZOBR_RS03735 0.31 -0.0
786,808 - AZOBR_RS03735 0.32 +0.7
786,808 - AZOBR_RS03735 0.32 +0.1
786,808 - AZOBR_RS03735 0.32 -0.2
786,828 + AZOBR_RS03735 0.35 -0.4
786,829 - AZOBR_RS03735 0.35 -0.7
787,048 - AZOBR_RS03735 0.71 +0.7
787,463 + +0.5
787,491 + +0.0
787,491 + -2.7
787,491 + +0.9
787,492 - -0.4
787,787 + AZOBR_RS03740 0.32 +0.6
787,787 + AZOBR_RS03740 0.32 -0.0
787,787 + AZOBR_RS03740 0.32 -0.9
787,787 + AZOBR_RS03740 0.32 +0.1
787,788 - AZOBR_RS03740 0.32 -0.6
787,788 - AZOBR_RS03740 0.32 -0.1
787,788 - AZOBR_RS03740 0.32 -0.3
787,788 - AZOBR_RS03740 0.32 +0.6
787,788 - AZOBR_RS03740 0.32 +0.1
788,099 + AZOBR_RS03740 0.86 -0.1
788,650 - AZOBR_RS03745 0.14 +0.3
789,097 + AZOBR_RS03745 0.27 +0.2

Or see this region's nucleotide sequence