Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04688

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04686 and MPMX20_04687 are separated by 331 nucleotidesMPMX20_04687 and MPMX20_04688 are separated by 41 nucleotidesMPMX20_04688 and MPMX20_04689 overlap by 4 nucleotidesMPMX20_04689 and MPMX20_04690 are separated by 18 nucleotides MPMX20_04686: MPMX20_04686 - Phospholipase D, at 39,412 to 39,792 _04686 MPMX20_04687: MPMX20_04687 - hypothetical protein, at 40,124 to 40,465 _04687 MPMX20_04688: MPMX20_04688 - hypothetical protein, at 40,507 to 41,238 _04688 MPMX20_04689: MPMX20_04689 - hypothetical protein, at 41,235 to 41,801 _04689 MPMX20_04690: MPMX20_04690 - Multifunctional conjugation protein TraI, at 41,820 to 47,117 _04690 Position (kb) 40 41 42Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 39.514 kb on + strand, within MPMX20_04686at 39.546 kb on + strand, within MPMX20_04686at 39.561 kb on + strand, within MPMX20_04686at 39.622 kb on - strand, within MPMX20_04686at 39.622 kb on - strand, within MPMX20_04686at 39.630 kb on + strand, within MPMX20_04686at 39.663 kb on - strand, within MPMX20_04686at 39.687 kb on + strand, within MPMX20_04686at 39.692 kb on + strand, within MPMX20_04686at 39.695 kb on - strand, within MPMX20_04686at 39.716 kb on + strand, within MPMX20_04686at 39.719 kb on - strand, within MPMX20_04686at 39.719 kb on - strand, within MPMX20_04686at 39.723 kb on + strand, within MPMX20_04686at 39.723 kb on + strand, within MPMX20_04686at 39.724 kb on - strand, within MPMX20_04686at 39.724 kb on - strand, within MPMX20_04686at 39.724 kb on - strand, within MPMX20_04686at 39.724 kb on - strand, within MPMX20_04686at 39.731 kb on - strand, within MPMX20_04686at 39.760 kb on + strandat 39.765 kb on + strandat 39.765 kb on + strandat 39.768 kb on - strandat 39.768 kb on - strandat 39.781 kb on + strandat 39.782 kb on + strandat 39.790 kb on - strandat 39.796 kb on - strandat 39.807 kb on + strandat 39.807 kb on - strandat 39.832 kb on - strandat 39.835 kb on + strandat 39.843 kb on + strandat 39.843 kb on + strandat 39.843 kb on + strandat 39.843 kb on + strandat 39.845 kb on + strandat 39.851 kb on - strandat 39.851 kb on - strandat 39.851 kb on - strandat 39.892 kb on - strandat 39.892 kb on - strandat 39.905 kb on - strandat 39.912 kb on + strandat 39.912 kb on + strandat 39.912 kb on + strandat 39.912 kb on + strandat 39.912 kb on + strandat 39.912 kb on + strandat 39.912 kb on + strandat 39.917 kb on + strandat 39.920 kb on - strandat 39.920 kb on - strandat 39.920 kb on - strandat 39.921 kb on - strandat 39.939 kb on - strandat 39.962 kb on + strandat 40.005 kb on - strandat 40.014 kb on - strandat 40.045 kb on + strandat 40.050 kb on + strandat 40.058 kb on - strandat 40.058 kb on - strandat 40.058 kb on - strandat 40.063 kb on + strandat 40.063 kb on + strandat 40.072 kb on + strandat 40.089 kb on + strandat 40.094 kb on + strandat 40.102 kb on + strandat 40.102 kb on - strandat 40.131 kb on - strandat 40.131 kb on - strandat 40.136 kb on - strandat 40.146 kb on - strandat 40.152 kb on + strandat 40.152 kb on + strandat 40.168 kb on + strand, within MPMX20_04687at 40.168 kb on + strand, within MPMX20_04687at 40.197 kb on - strand, within MPMX20_04687at 40.211 kb on - strand, within MPMX20_04687at 40.223 kb on - strand, within MPMX20_04687at 40.241 kb on + strand, within MPMX20_04687at 40.243 kb on - strand, within MPMX20_04687at 40.288 kb on - strand, within MPMX20_04687at 40.307 kb on + strand, within MPMX20_04687at 40.308 kb on + strand, within MPMX20_04687at 40.308 kb on + strand, within MPMX20_04687at 40.308 kb on + strand, within MPMX20_04687at 40.311 kb on - strand, within MPMX20_04687at 40.316 kb on - strand, within MPMX20_04687at 40.316 kb on - strand, within MPMX20_04687at 40.316 kb on - strand, within MPMX20_04687at 40.316 kb on - strand, within MPMX20_04687at 40.316 kb on - strand, within MPMX20_04687at 40.341 kb on + strand, within MPMX20_04687at 40.349 kb on + strand, within MPMX20_04687at 40.349 kb on - strand, within MPMX20_04687at 40.360 kb on + strand, within MPMX20_04687at 40.360 kb on + strand, within MPMX20_04687at 40.368 kb on - strand, within MPMX20_04687at 40.368 kb on - strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.370 kb on + strand, within MPMX20_04687at 40.375 kb on + strand, within MPMX20_04687at 40.375 kb on + strand, within MPMX20_04687at 40.375 kb on + strand, within MPMX20_04687at 40.375 kb on + strand, within MPMX20_04687at 40.378 kb on - strand, within MPMX20_04687at 40.378 kb on - strand, within MPMX20_04687at 40.378 kb on - strand, within MPMX20_04687at 40.378 kb on - strand, within MPMX20_04687at 40.383 kb on - strand, within MPMX20_04687at 40.383 kb on - strand, within MPMX20_04687at 40.383 kb on - strand, within MPMX20_04687at 40.383 kb on - strand, within MPMX20_04687at 40.383 kb on - strand, within MPMX20_04687at 40.393 kb on + strand, within MPMX20_04687at 40.399 kb on + strand, within MPMX20_04687at 40.409 kb on + strand, within MPMX20_04687at 40.473 kb on + strandat 40.494 kb on + strandat 40.495 kb on + strandat 40.502 kb on - strandat 40.503 kb on - strandat 40.505 kb on + strandat 40.505 kb on + strandat 40.505 kb on + strandat 40.505 kb on + strandat 40.505 kb on + strandat 40.505 kb on + strandat 40.505 kb on + strandat 40.532 kb on + strandat 40.542 kb on + strandat 40.542 kb on + strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.557 kb on - strandat 40.567 kb on - strandat 40.567 kb on - strandat 40.602 kb on + strand, within MPMX20_04688at 40.610 kb on - strand, within MPMX20_04688at 40.621 kb on + strand, within MPMX20_04688at 40.624 kb on - strand, within MPMX20_04688at 40.644 kb on - strand, within MPMX20_04688at 40.644 kb on - strand, within MPMX20_04688at 40.644 kb on - strand, within MPMX20_04688at 40.654 kb on - strand, within MPMX20_04688at 40.679 kb on + strand, within MPMX20_04688at 40.679 kb on + strand, within MPMX20_04688at 40.679 kb on + strand, within MPMX20_04688at 40.680 kb on - strand, within MPMX20_04688at 40.687 kb on - strand, within MPMX20_04688at 40.696 kb on - strand, within MPMX20_04688at 40.719 kb on + strand, within MPMX20_04688at 40.719 kb on + strand, within MPMX20_04688at 40.719 kb on + strand, within MPMX20_04688at 40.727 kb on - strand, within MPMX20_04688at 40.735 kb on + strand, within MPMX20_04688at 40.735 kb on + strand, within MPMX20_04688at 40.743 kb on - strand, within MPMX20_04688at 40.743 kb on - strand, within MPMX20_04688at 40.743 kb on - strand, within MPMX20_04688at 40.743 kb on - strand, within MPMX20_04688at 40.758 kb on - strand, within MPMX20_04688at 40.792 kb on - strand, within MPMX20_04688at 40.802 kb on - strand, within MPMX20_04688at 40.830 kb on - strand, within MPMX20_04688at 40.839 kb on + strand, within MPMX20_04688at 40.876 kb on - strand, within MPMX20_04688at 40.911 kb on - strand, within MPMX20_04688at 40.930 kb on + strand, within MPMX20_04688at 40.944 kb on + strand, within MPMX20_04688at 40.972 kb on + strand, within MPMX20_04688at 40.972 kb on + strand, within MPMX20_04688at 40.980 kb on - strand, within MPMX20_04688at 40.980 kb on - strand, within MPMX20_04688at 40.980 kb on - strand, within MPMX20_04688at 40.980 kb on - strand, within MPMX20_04688at 41.006 kb on - strand, within MPMX20_04688at 41.011 kb on - strand, within MPMX20_04688at 41.042 kb on + strand, within MPMX20_04688at 41.050 kb on - strand, within MPMX20_04688at 41.081 kb on + strand, within MPMX20_04688at 41.095 kb on + strand, within MPMX20_04688at 41.095 kb on + strand, within MPMX20_04688at 41.095 kb on + strand, within MPMX20_04688at 41.096 kb on + strand, within MPMX20_04688at 41.103 kb on - strand, within MPMX20_04688at 41.206 kb on - strandat 41.267 kb on + strandat 41.268 kb on - strandat 41.268 kb on - strandat 41.272 kb on + strandat 41.272 kb on + strandat 41.275 kb on - strandat 41.275 kb on - strandat 41.275 kb on - strandat 41.285 kb on + strandat 41.299 kb on - strand, within MPMX20_04689at 41.300 kb on + strand, within MPMX20_04689at 41.308 kb on - strand, within MPMX20_04689at 41.352 kb on - strand, within MPMX20_04689at 41.444 kb on + strand, within MPMX20_04689at 41.445 kb on - strand, within MPMX20_04689at 41.480 kb on + strand, within MPMX20_04689at 41.547 kb on - strand, within MPMX20_04689at 41.584 kb on - strand, within MPMX20_04689at 41.620 kb on + strand, within MPMX20_04689at 41.620 kb on + strand, within MPMX20_04689at 41.628 kb on - strand, within MPMX20_04689at 41.635 kb on + strand, within MPMX20_04689at 41.636 kb on - strand, within MPMX20_04689at 41.638 kb on - strand, within MPMX20_04689at 41.643 kb on - strand, within MPMX20_04689at 41.669 kb on + strand, within MPMX20_04689at 41.669 kb on + strand, within MPMX20_04689at 41.669 kb on + strand, within MPMX20_04689at 41.674 kb on + strand, within MPMX20_04689at 41.677 kb on - strand, within MPMX20_04689at 41.677 kb on - strand, within MPMX20_04689at 41.682 kb on - strand, within MPMX20_04689at 41.731 kb on + strand, within MPMX20_04689at 41.740 kb on + strand, within MPMX20_04689at 41.797 kb on + strandat 41.798 kb on + strandat 41.805 kb on - strandat 41.805 kb on - strandat 41.805 kb on - strandat 41.805 kb on - strandat 41.813 kb on + strandat 41.830 kb on - strandat 41.830 kb on - strandat 41.888 kb on - strandat 41.912 kb on + strandat 41.920 kb on - strandat 41.939 kb on - strandat 41.956 kb on + strandat 41.956 kb on + strandat 41.964 kb on - strandat 41.964 kb on - strandat 41.964 kb on - strandat 41.966 kb on + strandat 41.981 kb on + strandat 42.003 kb on + strandat 42.021 kb on + strandat 42.029 kb on - strandat 42.037 kb on - strandat 42.037 kb on - strandat 42.042 kb on - strandat 42.048 kb on - strandat 42.061 kb on + strandat 42.069 kb on - strandat 42.069 kb on - strandat 42.118 kb on + strandat 42.142 kb on + strandat 42.148 kb on - strandat 42.150 kb on - strandat 42.150 kb on - strandat 42.150 kb on - strandat 42.150 kb on - strandat 42.152 kb on + strandat 42.160 kb on - strandat 42.198 kb on + strandat 42.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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39,514 + MPMX20_04686 0.27 -2.4
39,546 + MPMX20_04686 0.35 +0.7
39,561 + MPMX20_04686 0.39 +1.0
39,622 - MPMX20_04686 0.55 -2.3
39,622 - MPMX20_04686 0.55 +2.3
39,630 + MPMX20_04686 0.57 +0.1
39,663 - MPMX20_04686 0.66 -0.9
39,687 + MPMX20_04686 0.72 +0.7
39,692 + MPMX20_04686 0.73 +1.3
39,695 - MPMX20_04686 0.74 +0.3
39,716 + MPMX20_04686 0.80 -0.1
39,719 - MPMX20_04686 0.81 -2.7
39,719 - MPMX20_04686 0.81 -3.8
39,723 + MPMX20_04686 0.82 +1.1
39,723 + MPMX20_04686 0.82 -0.3
39,724 - MPMX20_04686 0.82 +3.3
39,724 - MPMX20_04686 0.82 -4.5
39,724 - MPMX20_04686 0.82 +0.1
39,724 - MPMX20_04686 0.82 -1.2
39,731 - MPMX20_04686 0.84 -3.9
39,760 + -0.6
39,765 + -0.4
39,765 + +0.0
39,768 - -1.8
39,768 - -3.0
39,781 + -0.9
39,782 + +1.3
39,790 - -2.8
39,796 - -1.0
39,807 + +3.3
39,807 - -1.2
39,832 - -0.4
39,835 + +2.7
39,843 + +0.1
39,843 + -0.1
39,843 + -1.2
39,843 + +1.5
39,845 + -1.0
39,851 - +2.3
39,851 - +0.2
39,851 - +1.7
39,892 - +0.5
39,892 - -0.4
39,905 - +0.1
39,912 + +2.9
39,912 + +1.0
39,912 + +0.5
39,912 + +1.2
39,912 + +1.2
39,912 + +1.5
39,912 + +1.4
39,917 + +1.0
39,920 - -0.7
39,920 - -3.5
39,920 - +0.9
39,921 - +1.6
39,939 - +0.1
39,962 + +0.7
40,005 - +0.1
40,014 - -1.0
40,045 + -0.2
40,050 + -0.8
40,058 - +0.1
40,058 - -5.0
40,058 - -1.9
40,063 + -1.1
40,063 + +0.9
40,072 + +0.6
40,089 + +0.3
40,094 + +2.2
40,102 + -1.0
40,102 - -4.2
40,131 - +0.1
40,131 - -0.7
40,136 - +0.5
40,146 - -1.7
40,152 + +0.9
40,152 + -0.8
40,168 + MPMX20_04687 0.13 -1.3
40,168 + MPMX20_04687 0.13 +1.5
40,197 - MPMX20_04687 0.21 -1.3
40,211 - MPMX20_04687 0.25 -0.7
40,223 - MPMX20_04687 0.29 -3.2
40,241 + MPMX20_04687 0.34 -3.1
40,243 - MPMX20_04687 0.35 -0.4
40,288 - MPMX20_04687 0.48 -2.0
40,307 + MPMX20_04687 0.54 -1.4
40,308 + MPMX20_04687 0.54 +1.5
40,308 + MPMX20_04687 0.54 +3.3
40,308 + MPMX20_04687 0.54 +3.0
40,311 - MPMX20_04687 0.55 -3.4
40,316 - MPMX20_04687 0.56 +0.3
40,316 - MPMX20_04687 0.56 -1.8
40,316 - MPMX20_04687 0.56 -2.0
40,316 - MPMX20_04687 0.56 -0.9
40,316 - MPMX20_04687 0.56 -2.0
40,341 + MPMX20_04687 0.63 +1.7
40,349 + MPMX20_04687 0.66 -2.0
40,349 - MPMX20_04687 0.66 -4.2
40,360 + MPMX20_04687 0.69 +0.9
40,360 + MPMX20_04687 0.69 -1.5
40,368 - MPMX20_04687 0.71 -0.6
40,368 - MPMX20_04687 0.71 -1.9
40,370 + MPMX20_04687 0.72 +0.3
40,370 + MPMX20_04687 0.72 +0.4
40,370 + MPMX20_04687 0.72 -0.1
40,370 + MPMX20_04687 0.72 -1.8
40,370 + MPMX20_04687 0.72 +1.5
40,370 + MPMX20_04687 0.72 -0.9
40,370 + MPMX20_04687 0.72 -1.0
40,370 + MPMX20_04687 0.72 +0.1
40,370 + MPMX20_04687 0.72 +1.0
40,375 + MPMX20_04687 0.73 -0.0
40,375 + MPMX20_04687 0.73 +0.1
40,375 + MPMX20_04687 0.73 -1.4
40,375 + MPMX20_04687 0.73 -1.5
40,378 - MPMX20_04687 0.74 -2.8
40,378 - MPMX20_04687 0.74 -3.1
40,378 - MPMX20_04687 0.74 -4.7
40,378 - MPMX20_04687 0.74 -2.7
40,383 - MPMX20_04687 0.76 -2.7
40,383 - MPMX20_04687 0.76 -3.9
40,383 - MPMX20_04687 0.76 -2.9
40,383 - MPMX20_04687 0.76 -2.1
40,383 - MPMX20_04687 0.76 -4.4
40,393 + MPMX20_04687 0.79 +0.2
40,399 + MPMX20_04687 0.80 -1.7
40,409 + MPMX20_04687 0.83 -1.0
40,473 + -3.1
40,494 + -0.7
40,495 + -0.5
40,502 - -0.9
40,503 - -1.4
40,505 + +1.7
40,505 + -0.5
40,505 + -1.1
40,505 + -1.4
40,505 + -1.4
40,505 + -0.0
40,505 + +0.5
40,532 + -0.4
40,542 + -2.7
40,542 + -0.4
40,550 - -1.9
40,550 - -4.0
40,557 - -2.0
40,567 - -3.1
40,567 - -1.8
40,602 + MPMX20_04688 0.13 -0.9
40,610 - MPMX20_04688 0.14 -4.3
40,621 + MPMX20_04688 0.16 -2.3
40,624 - MPMX20_04688 0.16 -2.8
40,644 - MPMX20_04688 0.19 -2.9
40,644 - MPMX20_04688 0.19 -2.4
40,644 - MPMX20_04688 0.19 +1.0
40,654 - MPMX20_04688 0.20 -2.4
40,679 + MPMX20_04688 0.23 +0.3
40,679 + MPMX20_04688 0.23 -1.6
40,679 + MPMX20_04688 0.23 -0.8
40,680 - MPMX20_04688 0.24 -0.0
40,687 - MPMX20_04688 0.25 -1.7
40,696 - MPMX20_04688 0.26 -1.3
40,719 + MPMX20_04688 0.29 -1.0
40,719 + MPMX20_04688 0.29 -0.6
40,719 + MPMX20_04688 0.29 +4.9
40,727 - MPMX20_04688 0.30 +1.3
40,735 + MPMX20_04688 0.31 -0.7
40,735 + MPMX20_04688 0.31 -1.5
40,743 - MPMX20_04688 0.32 -1.7
40,743 - MPMX20_04688 0.32 -1.8
40,743 - MPMX20_04688 0.32 -1.1
40,743 - MPMX20_04688 0.32 -1.1
40,758 - MPMX20_04688 0.34 +1.0
40,792 - MPMX20_04688 0.39 -2.6
40,802 - MPMX20_04688 0.40 -3.7
40,830 - MPMX20_04688 0.44 -1.8
40,839 + MPMX20_04688 0.45 -0.7
40,876 - MPMX20_04688 0.50 -2.0
40,911 - MPMX20_04688 0.55 -1.2
40,930 + MPMX20_04688 0.58 +0.5
40,944 + MPMX20_04688 0.60 -1.3
40,972 + MPMX20_04688 0.64 -1.2
40,972 + MPMX20_04688 0.64 +0.4
40,980 - MPMX20_04688 0.65 -0.5
40,980 - MPMX20_04688 0.65 -0.4
40,980 - MPMX20_04688 0.65 -3.3
40,980 - MPMX20_04688 0.65 -1.5
41,006 - MPMX20_04688 0.68 -0.4
41,011 - MPMX20_04688 0.69 +0.1
41,042 + MPMX20_04688 0.73 +0.1
41,050 - MPMX20_04688 0.74 -2.0
41,081 + MPMX20_04688 0.78 -1.3
41,095 + MPMX20_04688 0.80 -0.0
41,095 + MPMX20_04688 0.80 +1.1
41,095 + MPMX20_04688 0.80 -2.2
41,096 + MPMX20_04688 0.80 -1.0
41,103 - MPMX20_04688 0.81 -0.5
41,206 - -0.6
41,267 + -1.2
41,268 - -1.0
41,268 - -1.1
41,272 + -1.3
41,272 + -2.0
41,275 - -1.5
41,275 - -0.5
41,275 - -3.4
41,285 + -0.3
41,299 - MPMX20_04689 0.11 +0.2
41,300 + MPMX20_04689 0.11 +0.5
41,308 - MPMX20_04689 0.13 -0.3
41,352 - MPMX20_04689 0.21 +1.7
41,444 + MPMX20_04689 0.37 +1.4
41,445 - MPMX20_04689 0.37 -3.3
41,480 + MPMX20_04689 0.43 +0.5
41,547 - MPMX20_04689 0.55 -1.4
41,584 - MPMX20_04689 0.62 +0.7
41,620 + MPMX20_04689 0.68 -2.2
41,620 + MPMX20_04689 0.68 -0.9
41,628 - MPMX20_04689 0.69 -2.1
41,635 + MPMX20_04689 0.71 -0.6
41,636 - MPMX20_04689 0.71 +0.6
41,638 - MPMX20_04689 0.71 -1.5
41,643 - MPMX20_04689 0.72 -0.9
41,669 + MPMX20_04689 0.77 +2.4
41,669 + MPMX20_04689 0.77 -0.5
41,669 + MPMX20_04689 0.77 -0.6
41,674 + MPMX20_04689 0.77 -1.3
41,677 - MPMX20_04689 0.78 -1.4
41,677 - MPMX20_04689 0.78 -1.8
41,682 - MPMX20_04689 0.79 -1.2
41,731 + MPMX20_04689 0.87 +0.1
41,740 + MPMX20_04689 0.89 -1.4
41,797 + -0.9
41,798 + +0.2
41,805 - -0.6
41,805 - -2.9
41,805 - -0.9
41,805 - -0.9
41,813 + -0.4
41,830 - -3.2
41,830 - -5.1
41,888 - -1.9
41,912 + +1.2
41,920 - -2.1
41,939 - +0.1
41,956 + +0.3
41,956 + -0.8
41,964 - -2.2
41,964 - -1.9
41,964 - -1.7
41,966 + -1.2
41,981 + +0.3
42,003 + +1.3
42,021 + -2.4
42,029 - -2.3
42,037 - -1.9
42,037 - -0.8
42,042 - -0.3
42,048 - -2.6
42,061 + -0.0
42,069 - -0.7
42,069 - -2.2
42,118 + -0.4
42,142 + -0.4
42,148 - -1.4
42,150 - +0.3
42,150 - -1.9
42,150 - -1.9
42,150 - -1.8
42,152 + +0.2
42,160 - -3.1
42,198 + -0.1
42,208 + +0.3

Or see this region's nucleotide sequence