Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04615

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04613 and MPMX20_04614 overlap by 35 nucleotidesMPMX20_04614 and MPMX20_04615 are separated by 12 nucleotidesMPMX20_04615 and MPMX20_04616 are separated by 107 nucleotides MPMX20_04613: MPMX20_04613 - putative transport protein HsrA, at 4,830,654 to 4,832,087 _04613 MPMX20_04614: MPMX20_04614 - Ribose operon repressor, at 4,832,053 to 4,833,036 _04614 MPMX20_04615: MPMX20_04615 - Ribokinase, at 4,833,049 to 4,833,978 _04615 MPMX20_04616: MPMX20_04616 - Ribose import binding protein RbsB, at 4,834,086 to 4,834,976 _04616 Position (kb) 4833 4834Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4832.051 kb on + strandat 4832.051 kb on + strandat 4832.057 kb on + strandat 4832.059 kb on - strandat 4832.074 kb on - strandat 4832.084 kb on - strandat 4832.096 kb on - strandat 4832.103 kb on + strandat 4832.180 kb on + strand, within MPMX20_04614at 4832.322 kb on - strand, within MPMX20_04614at 4832.352 kb on + strand, within MPMX20_04614at 4832.404 kb on - strand, within MPMX20_04614at 4832.512 kb on + strand, within MPMX20_04614at 4832.520 kb on - strand, within MPMX20_04614at 4832.540 kb on - strand, within MPMX20_04614at 4832.611 kb on - strand, within MPMX20_04614at 4832.641 kb on - strand, within MPMX20_04614at 4832.641 kb on - strand, within MPMX20_04614at 4832.685 kb on + strand, within MPMX20_04614at 4832.685 kb on + strand, within MPMX20_04614at 4832.685 kb on + strand, within MPMX20_04614at 4832.693 kb on - strand, within MPMX20_04614at 4832.756 kb on + strand, within MPMX20_04614at 4832.756 kb on + strand, within MPMX20_04614at 4832.764 kb on - strand, within MPMX20_04614at 4832.764 kb on - strand, within MPMX20_04614at 4832.766 kb on + strand, within MPMX20_04614at 4832.766 kb on + strand, within MPMX20_04614at 4832.766 kb on + strand, within MPMX20_04614at 4832.769 kb on - strand, within MPMX20_04614at 4832.774 kb on - strand, within MPMX20_04614at 4832.774 kb on - strand, within MPMX20_04614at 4832.774 kb on - strand, within MPMX20_04614at 4832.774 kb on - strand, within MPMX20_04614at 4832.774 kb on - strand, within MPMX20_04614at 4832.781 kb on - strand, within MPMX20_04614at 4832.789 kb on + strand, within MPMX20_04614at 4832.797 kb on + strand, within MPMX20_04614at 4832.805 kb on - strand, within MPMX20_04614at 4832.805 kb on - strand, within MPMX20_04614at 4832.836 kb on + strand, within MPMX20_04614at 4832.858 kb on + strand, within MPMX20_04614at 4832.866 kb on - strand, within MPMX20_04614at 4832.880 kb on + strand, within MPMX20_04614at 4832.882 kb on - strand, within MPMX20_04614at 4832.888 kb on - strand, within MPMX20_04614at 4832.922 kb on - strand, within MPMX20_04614at 4832.928 kb on - strand, within MPMX20_04614at 4833.040 kb on + strandat 4833.040 kb on + strandat 4833.046 kb on + strandat 4833.046 kb on + strandat 4833.046 kb on + strandat 4833.046 kb on + strandat 4833.054 kb on - strandat 4833.054 kb on - strandat 4833.103 kb on - strandat 4833.110 kb on + strandat 4833.118 kb on - strandat 4833.118 kb on - strandat 4833.139 kb on + strandat 4833.176 kb on + strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.193 kb on + strand, within MPMX20_04615at 4833.195 kb on + strand, within MPMX20_04615at 4833.203 kb on - strand, within MPMX20_04615at 4833.246 kb on + strand, within MPMX20_04615at 4833.247 kb on - strand, within MPMX20_04615at 4833.254 kb on - strand, within MPMX20_04615at 4833.294 kb on - strand, within MPMX20_04615at 4833.296 kb on - strand, within MPMX20_04615at 4833.317 kb on - strand, within MPMX20_04615at 4833.333 kb on - strand, within MPMX20_04615at 4833.431 kb on - strand, within MPMX20_04615at 4833.431 kb on - strand, within MPMX20_04615at 4833.431 kb on - strand, within MPMX20_04615at 4833.479 kb on + strand, within MPMX20_04615at 4833.487 kb on - strand, within MPMX20_04615at 4833.567 kb on - strand, within MPMX20_04615at 4833.616 kb on + strand, within MPMX20_04615at 4833.616 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.647 kb on - strand, within MPMX20_04615at 4833.699 kb on + strand, within MPMX20_04615at 4833.736 kb on - strand, within MPMX20_04615at 4833.736 kb on - strand, within MPMX20_04615at 4833.771 kb on - strand, within MPMX20_04615at 4833.778 kb on + strand, within MPMX20_04615at 4833.779 kb on + strand, within MPMX20_04615at 4833.786 kb on - strand, within MPMX20_04615at 4833.876 kb on + strand, within MPMX20_04615at 4833.902 kb on + strandat 4833.980 kb on + strandat 4834.003 kb on + strandat 4834.003 kb on + strandat 4834.011 kb on - strandat 4834.054 kb on - strandat 4834.062 kb on + strandat 4834.062 kb on + strandat 4834.062 kb on + strandat 4834.070 kb on - strandat 4834.143 kb on + strandat 4834.196 kb on + strand, within MPMX20_04616at 4834.369 kb on + strand, within MPMX20_04616at 4834.504 kb on + strand, within MPMX20_04616at 4834.565 kb on - strand, within MPMX20_04616at 4834.641 kb on + strand, within MPMX20_04616at 4834.749 kb on - strand, within MPMX20_04616at 4834.754 kb on - strand, within MPMX20_04616at 4834.754 kb on - strand, within MPMX20_04616at 4834.761 kb on - strand, within MPMX20_04616at 4834.861 kb on + strand, within MPMX20_04616at 4834.876 kb on + strand, within MPMX20_04616at 4834.925 kb on - strandat 4834.930 kb on - strandat 4834.942 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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4,832,051 + -1.4
4,832,051 + +0.8
4,832,057 + +0.5
4,832,059 - -2.4
4,832,074 - -0.3
4,832,084 - +0.2
4,832,096 - -0.6
4,832,103 + +0.1
4,832,180 + MPMX20_04614 0.13 -0.6
4,832,322 - MPMX20_04614 0.27 +0.8
4,832,352 + MPMX20_04614 0.30 +1.4
4,832,404 - MPMX20_04614 0.36 +0.0
4,832,512 + MPMX20_04614 0.47 -1.1
4,832,520 - MPMX20_04614 0.47 +1.2
4,832,540 - MPMX20_04614 0.49 +0.8
4,832,611 - MPMX20_04614 0.57 +0.2
4,832,641 - MPMX20_04614 0.60 +1.5
4,832,641 - MPMX20_04614 0.60 +0.3
4,832,685 + MPMX20_04614 0.64 -0.4
4,832,685 + MPMX20_04614 0.64 +0.9
4,832,685 + MPMX20_04614 0.64 +0.5
4,832,693 - MPMX20_04614 0.65 +0.8
4,832,756 + MPMX20_04614 0.71 +1.8
4,832,756 + MPMX20_04614 0.71 -0.4
4,832,764 - MPMX20_04614 0.72 +1.1
4,832,764 - MPMX20_04614 0.72 +1.0
4,832,766 + MPMX20_04614 0.72 +2.3
4,832,766 + MPMX20_04614 0.72 +0.6
4,832,766 + MPMX20_04614 0.72 -1.7
4,832,769 - MPMX20_04614 0.73 -0.2
4,832,774 - MPMX20_04614 0.73 +0.4
4,832,774 - MPMX20_04614 0.73 -0.6
4,832,774 - MPMX20_04614 0.73 +3.0
4,832,774 - MPMX20_04614 0.73 +0.1
4,832,774 - MPMX20_04614 0.73 -1.4
4,832,781 - MPMX20_04614 0.74 +0.2
4,832,789 + MPMX20_04614 0.75 -1.0
4,832,797 + MPMX20_04614 0.76 +0.7
4,832,805 - MPMX20_04614 0.76 -0.1
4,832,805 - MPMX20_04614 0.76 +0.5
4,832,836 + MPMX20_04614 0.80 -3.1
4,832,858 + MPMX20_04614 0.82 -0.1
4,832,866 - MPMX20_04614 0.83 +1.3
4,832,880 + MPMX20_04614 0.84 -0.5
4,832,882 - MPMX20_04614 0.84 -1.7
4,832,888 - MPMX20_04614 0.85 +0.0
4,832,922 - MPMX20_04614 0.88 +1.5
4,832,928 - MPMX20_04614 0.89 +0.9
4,833,040 + +1.5
4,833,040 + +1.8
4,833,046 + +1.8
4,833,046 + +1.2
4,833,046 + +0.8
4,833,046 + -0.3
4,833,054 - +0.1
4,833,054 - -1.5
4,833,103 - +1.1
4,833,110 + +1.2
4,833,118 - -0.9
4,833,118 - +1.7
4,833,139 + +1.4
4,833,176 + MPMX20_04615 0.14 +0.7
4,833,184 - MPMX20_04615 0.15 +0.9
4,833,184 - MPMX20_04615 0.15 -0.4
4,833,184 - MPMX20_04615 0.15 -0.1
4,833,184 - MPMX20_04615 0.15 +0.2
4,833,193 + MPMX20_04615 0.15 +1.0
4,833,195 + MPMX20_04615 0.16 -0.7
4,833,203 - MPMX20_04615 0.17 +0.5
4,833,246 + MPMX20_04615 0.21 -1.2
4,833,247 - MPMX20_04615 0.21 +2.8
4,833,254 - MPMX20_04615 0.22 +2.1
4,833,294 - MPMX20_04615 0.26 +1.5
4,833,296 - MPMX20_04615 0.27 -0.1
4,833,317 - MPMX20_04615 0.29 +0.9
4,833,333 - MPMX20_04615 0.31 +1.1
4,833,431 - MPMX20_04615 0.41 +0.6
4,833,431 - MPMX20_04615 0.41 +0.4
4,833,431 - MPMX20_04615 0.41 +1.7
4,833,479 + MPMX20_04615 0.46 +1.1
4,833,487 - MPMX20_04615 0.47 +0.3
4,833,567 - MPMX20_04615 0.56 +0.8
4,833,616 + MPMX20_04615 0.61 +0.3
4,833,616 + MPMX20_04615 0.61 +1.0
4,833,626 + MPMX20_04615 0.62 -0.3
4,833,626 + MPMX20_04615 0.62 +0.2
4,833,626 + MPMX20_04615 0.62 +0.9
4,833,626 + MPMX20_04615 0.62 +1.3
4,833,626 + MPMX20_04615 0.62 +1.1
4,833,626 + MPMX20_04615 0.62 +0.9
4,833,626 + MPMX20_04615 0.62 -0.6
4,833,634 - MPMX20_04615 0.63 +0.9
4,833,634 - MPMX20_04615 0.63 +1.5
4,833,634 - MPMX20_04615 0.63 +0.7
4,833,634 - MPMX20_04615 0.63 -0.2
4,833,634 - MPMX20_04615 0.63 +2.1
4,833,647 - MPMX20_04615 0.64 +1.8
4,833,699 + MPMX20_04615 0.70 +0.8
4,833,736 - MPMX20_04615 0.74 +1.6
4,833,736 - MPMX20_04615 0.74 -0.4
4,833,771 - MPMX20_04615 0.78 +0.9
4,833,778 + MPMX20_04615 0.78 +2.4
4,833,779 + MPMX20_04615 0.78 +0.8
4,833,786 - MPMX20_04615 0.79 +0.2
4,833,876 + MPMX20_04615 0.89 -0.3
4,833,902 + +0.8
4,833,980 + -0.2
4,834,003 + -2.1
4,834,003 + +0.9
4,834,011 - +4.1
4,834,054 - +1.5
4,834,062 + +4.1
4,834,062 + +0.9
4,834,062 + +0.3
4,834,070 - +1.5
4,834,143 + +1.2
4,834,196 + MPMX20_04616 0.12 +0.6
4,834,369 + MPMX20_04616 0.32 -0.5
4,834,504 + MPMX20_04616 0.47 +0.5
4,834,565 - MPMX20_04616 0.54 +1.1
4,834,641 + MPMX20_04616 0.62 -0.2
4,834,749 - MPMX20_04616 0.74 -0.5
4,834,754 - MPMX20_04616 0.75 +0.0
4,834,754 - MPMX20_04616 0.75 +2.3
4,834,761 - MPMX20_04616 0.76 -0.4
4,834,861 + MPMX20_04616 0.87 -1.2
4,834,876 + MPMX20_04616 0.89 -1.0
4,834,925 - -0.1
4,834,930 - +3.8
4,834,942 + +0.6

Or see this region's nucleotide sequence