Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04497

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04496 and MPMX20_04497 are separated by 153 nucleotidesMPMX20_04497 and MPMX20_04498 overlap by 4 nucleotides MPMX20_04496: MPMX20_04496 - Ketol-acid reductoisomerase (NADP(+)), at 4,702,154 to 4,703,629 _04496 MPMX20_04497: MPMX20_04497 - HTH-type transcriptional regulator GltC, at 4,703,783 to 4,704,673 _04497 MPMX20_04498: MPMX20_04498 - L-threonine dehydratase biosynthetic IlvA, at 4,704,670 to 4,706,217 _04498 Position (kb) 4703 4704 4705Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4702.886 kb on + strand, within MPMX20_04496at 4702.983 kb on + strand, within MPMX20_04496at 4702.991 kb on - strand, within MPMX20_04496at 4703.069 kb on + strand, within MPMX20_04496at 4703.071 kb on - strand, within MPMX20_04496at 4703.243 kb on + strand, within MPMX20_04496at 4703.251 kb on - strand, within MPMX20_04496at 4703.251 kb on - strand, within MPMX20_04496at 4703.259 kb on + strand, within MPMX20_04496at 4703.329 kb on + strand, within MPMX20_04496at 4703.405 kb on + strand, within MPMX20_04496at 4703.413 kb on - strand, within MPMX20_04496at 4703.429 kb on - strand, within MPMX20_04496at 4703.431 kb on + strand, within MPMX20_04496at 4703.447 kb on - strand, within MPMX20_04496at 4703.472 kb on - strand, within MPMX20_04496at 4703.473 kb on - strand, within MPMX20_04496at 4703.476 kb on + strand, within MPMX20_04496at 4703.514 kb on + strandat 4703.568 kb on - strandat 4703.611 kb on + strandat 4703.634 kb on - strandat 4703.638 kb on + strandat 4703.645 kb on + strandat 4703.645 kb on + strandat 4703.786 kb on + strandat 4703.786 kb on + strandat 4703.855 kb on + strandat 4703.855 kb on + strandat 4703.953 kb on + strand, within MPMX20_04497at 4704.011 kb on - strand, within MPMX20_04497at 4704.024 kb on + strand, within MPMX20_04497at 4704.032 kb on - strand, within MPMX20_04497at 4704.039 kb on + strand, within MPMX20_04497at 4704.234 kb on - strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.309 kb on - strand, within MPMX20_04497at 4704.345 kb on + strand, within MPMX20_04497at 4704.353 kb on - strand, within MPMX20_04497at 4704.390 kb on + strand, within MPMX20_04497at 4704.398 kb on - strand, within MPMX20_04497at 4704.470 kb on + strand, within MPMX20_04497at 4704.482 kb on + strand, within MPMX20_04497at 4704.495 kb on - strand, within MPMX20_04497at 4704.503 kb on - strand, within MPMX20_04497at 4704.539 kb on - strand, within MPMX20_04497at 4704.539 kb on - strand, within MPMX20_04497at 4704.539 kb on - strand, within MPMX20_04497at 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.838 kb on + strand, within MPMX20_04498at 4704.907 kb on + strand, within MPMX20_04498at 4704.915 kb on - strand, within MPMX20_04498at 4704.990 kb on + strand, within MPMX20_04498at 4704.994 kb on - strand, within MPMX20_04498at 4705.044 kb on + strand, within MPMX20_04498at 4705.065 kb on - strand, within MPMX20_04498at 4705.070 kb on - strand, within MPMX20_04498at 4705.096 kb on - strand, within MPMX20_04498at 4705.168 kb on - strand, within MPMX20_04498at 4705.226 kb on - strand, within MPMX20_04498at 4705.283 kb on - strand, within MPMX20_04498at 4705.314 kb on - strand, within MPMX20_04498at 4705.608 kb on + strand, within MPMX20_04498at 4705.623 kb on + strand, within MPMX20_04498at 4705.623 kb on + strand, within MPMX20_04498

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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4,702,886 + MPMX20_04496 0.50 -0.2
4,702,983 + MPMX20_04496 0.56 +0.3
4,702,991 - MPMX20_04496 0.57 -0.5
4,703,069 + MPMX20_04496 0.62 +0.1
4,703,071 - MPMX20_04496 0.62 -1.3
4,703,243 + MPMX20_04496 0.74 +0.3
4,703,251 - MPMX20_04496 0.74 -1.3
4,703,251 - MPMX20_04496 0.74 -0.9
4,703,259 + MPMX20_04496 0.75 +1.2
4,703,329 + MPMX20_04496 0.80 -2.6
4,703,405 + MPMX20_04496 0.85 +0.5
4,703,413 - MPMX20_04496 0.85 +1.5
4,703,429 - MPMX20_04496 0.86 +3.1
4,703,431 + MPMX20_04496 0.87 +0.5
4,703,447 - MPMX20_04496 0.88 -0.9
4,703,472 - MPMX20_04496 0.89 +0.5
4,703,473 - MPMX20_04496 0.89 +2.1
4,703,476 + MPMX20_04496 0.90 +0.1
4,703,514 + -1.0
4,703,568 - +0.1
4,703,611 + -1.5
4,703,634 - +0.8
4,703,638 + -2.0
4,703,645 + -0.6
4,703,645 + -0.2
4,703,786 + -0.3
4,703,786 + -0.2
4,703,855 + +2.3
4,703,855 + -0.3
4,703,953 + MPMX20_04497 0.19 +1.5
4,704,011 - MPMX20_04497 0.26 -1.8
4,704,024 + MPMX20_04497 0.27 +3.5
4,704,032 - MPMX20_04497 0.28 +5.6
4,704,039 + MPMX20_04497 0.29 -1.2
4,704,234 - MPMX20_04497 0.51 +1.7
4,704,296 + MPMX20_04497 0.58 +0.5
4,704,296 + MPMX20_04497 0.58 -0.3
4,704,296 + MPMX20_04497 0.58 +0.2
4,704,296 + MPMX20_04497 0.58 -2.4
4,704,304 - MPMX20_04497 0.58 -1.4
4,704,304 - MPMX20_04497 0.58 +2.1
4,704,304 - MPMX20_04497 0.58 +1.5
4,704,304 - MPMX20_04497 0.58 -0.4
4,704,309 - MPMX20_04497 0.59 -1.4
4,704,345 + MPMX20_04497 0.63 +0.9
4,704,353 - MPMX20_04497 0.64 -1.5
4,704,390 + MPMX20_04497 0.68 +0.4
4,704,398 - MPMX20_04497 0.69 +0.8
4,704,470 + MPMX20_04497 0.77 +0.2
4,704,482 + MPMX20_04497 0.78 +1.8
4,704,495 - MPMX20_04497 0.80 -1.8
4,704,503 - MPMX20_04497 0.81 +0.5
4,704,539 - MPMX20_04497 0.85 +2.5
4,704,539 - MPMX20_04497 0.85 -0.2
4,704,539 - MPMX20_04497 0.85 +0.0
4,704,782 - +0.0
4,704,782 - +0.0
4,704,782 - -0.4
4,704,782 - +0.8
4,704,782 - +0.4
4,704,838 + MPMX20_04498 0.11 -1.5
4,704,907 + MPMX20_04498 0.15 -0.4
4,704,915 - MPMX20_04498 0.16 +0.4
4,704,990 + MPMX20_04498 0.21 -1.9
4,704,994 - MPMX20_04498 0.21 -0.6
4,705,044 + MPMX20_04498 0.24 -1.7
4,705,065 - MPMX20_04498 0.26 -1.6
4,705,070 - MPMX20_04498 0.26 -0.1
4,705,096 - MPMX20_04498 0.28 +0.8
4,705,168 - MPMX20_04498 0.32 +0.1
4,705,226 - MPMX20_04498 0.36 +3.3
4,705,283 - MPMX20_04498 0.40 -1.4
4,705,314 - MPMX20_04498 0.42 +0.5
4,705,608 + MPMX20_04498 0.61 -0.0
4,705,623 + MPMX20_04498 0.62 -1.1
4,705,623 + MPMX20_04498 0.62 -0.7

Or see this region's nucleotide sequence