Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04339 and MPMX20_04340 overlap by 8 nucleotides MPMX20_04340 and MPMX20_04341 are separated by 2 nucleotides
MPMX20_04339: MPMX20_04339 - Cell division protein FtsX, at 4,534,235 to 4,535,290
_04339
MPMX20_04340: MPMX20_04340 - Cell division ATP-binding protein FtsE, at 4,535,283 to 4,535,948
_04340
MPMX20_04341: MPMX20_04341 - Signal recognition particle receptor FtsY, at 4,535,951 to 4,537,417
_04341
Position (kb) 4535
4536 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 4534.300 kb on - strand at 4534.300 kb on - strand at 4534.385 kb on + strand, within MPMX20_04339 at 4534.478 kb on - strand, within MPMX20_04339 at 4534.489 kb on + strand, within MPMX20_04339 at 4534.558 kb on + strand, within MPMX20_04339 at 4534.634 kb on - strand, within MPMX20_04339 at 4534.795 kb on + strand, within MPMX20_04339 at 4534.803 kb on - strand, within MPMX20_04339 at 4534.805 kb on + strand, within MPMX20_04339 at 4534.813 kb on - strand, within MPMX20_04339 at 4534.817 kb on + strand, within MPMX20_04339 at 4534.817 kb on + strand, within MPMX20_04339 at 4534.822 kb on + strand, within MPMX20_04339 at 4534.825 kb on - strand, within MPMX20_04339 at 4534.844 kb on + strand, within MPMX20_04339 at 4534.886 kb on + strand, within MPMX20_04339 at 4534.941 kb on + strand, within MPMX20_04339 at 4534.956 kb on + strand, within MPMX20_04339 at 4534.956 kb on + strand, within MPMX20_04339 at 4534.964 kb on - strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.977 kb on - strand, within MPMX20_04339 at 4534.977 kb on - strand, within MPMX20_04339 at 4534.982 kb on - strand, within MPMX20_04339 at 4534.982 kb on - strand, within MPMX20_04339 at 4534.982 kb on - strand, within MPMX20_04339 at 4535.043 kb on - strand, within MPMX20_04339 at 4535.099 kb on + strand, within MPMX20_04339 at 4535.111 kb on + strand, within MPMX20_04339 at 4535.373 kb on + strand, within MPMX20_04340 at 4535.381 kb on + strand, within MPMX20_04340 at 4535.490 kb on - strand, within MPMX20_04340 at 4535.530 kb on - strand, within MPMX20_04340 at 4535.583 kb on - strand, within MPMX20_04340 at 4535.583 kb on - strand, within MPMX20_04340 at 4535.607 kb on + strand, within MPMX20_04340 at 4535.612 kb on + strand, within MPMX20_04340 at 4535.655 kb on + strand, within MPMX20_04340 at 4535.756 kb on - strand, within MPMX20_04340 at 4535.756 kb on - strand, within MPMX20_04340 at 4535.809 kb on + strand, within MPMX20_04340 at 4535.843 kb on + strand, within MPMX20_04340 at 4535.876 kb on + strand, within MPMX20_04340 at 4535.884 kb on - strand at 4535.899 kb on + strand at 4535.922 kb on - strand at 4535.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 4,534,300 - +0.3 4,534,300 - -0.9 4,534,385 + MPMX20_04339 0.14 -2.2 4,534,478 - MPMX20_04339 0.23 -1.1 4,534,489 + MPMX20_04339 0.24 -1.3 4,534,558 + MPMX20_04339 0.31 -1.5 4,534,634 - MPMX20_04339 0.38 +2.1 4,534,795 + MPMX20_04339 0.53 -2.5 4,534,803 - MPMX20_04339 0.54 -1.7 4,534,805 + MPMX20_04339 0.54 -2.6 4,534,813 - MPMX20_04339 0.55 -1.4 4,534,817 + MPMX20_04339 0.55 -1.4 4,534,817 + MPMX20_04339 0.55 -1.9 4,534,822 + MPMX20_04339 0.56 -0.1 4,534,825 - MPMX20_04339 0.56 +0.1 4,534,844 + MPMX20_04339 0.58 +0.4 4,534,886 + MPMX20_04339 0.62 -1.5 4,534,941 + MPMX20_04339 0.67 +6.6 4,534,956 + MPMX20_04339 0.68 -0.8 4,534,956 + MPMX20_04339 0.68 -1.3 4,534,964 - MPMX20_04339 0.69 -2.1 4,534,974 + MPMX20_04339 0.70 -1.8 4,534,974 + MPMX20_04339 0.70 -1.2 4,534,974 + MPMX20_04339 0.70 -0.3 4,534,974 + MPMX20_04339 0.70 +0.5 4,534,974 + MPMX20_04339 0.70 +6.3 4,534,974 + MPMX20_04339 0.70 +0.5 4,534,974 + MPMX20_04339 0.70 -2.1 4,534,977 - MPMX20_04339 0.70 +1.1 4,534,977 - MPMX20_04339 0.70 -0.8 4,534,982 - MPMX20_04339 0.71 -2.4 4,534,982 - MPMX20_04339 0.71 -0.6 4,534,982 - MPMX20_04339 0.71 -1.5 4,535,043 - MPMX20_04339 0.77 -2.0 4,535,099 + MPMX20_04339 0.82 +3.1 4,535,111 + MPMX20_04339 0.83 +0.8 4,535,373 + MPMX20_04340 0.14 -1.6 4,535,381 + MPMX20_04340 0.15 +0.0 4,535,490 - MPMX20_04340 0.31 -1.4 4,535,530 - MPMX20_04340 0.37 -1.6 4,535,583 - MPMX20_04340 0.45 -0.8 4,535,583 - MPMX20_04340 0.45 +4.2 4,535,607 + MPMX20_04340 0.49 -1.1 4,535,612 + MPMX20_04340 0.49 -1.5 4,535,655 + MPMX20_04340 0.56 -0.3 4,535,756 - MPMX20_04340 0.71 +9.2 4,535,756 - MPMX20_04340 0.71 +0.8 4,535,809 + MPMX20_04340 0.79 -0.5 4,535,843 + MPMX20_04340 0.84 -1.7 4,535,876 + MPMX20_04340 0.89 +0.9 4,535,884 - -0.1 4,535,899 + +0.8 4,535,922 - +0.4 4,535,931 - +0.3
Or see this region's nucleotide sequence