Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04271

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04269 and MPMX20_04270 overlap by 4 nucleotidesMPMX20_04270 and MPMX20_04271 are separated by 136 nucleotidesMPMX20_04271 and MPMX20_04272 are separated by 145 nucleotidesMPMX20_04272 and MPMX20_04273 are separated by 100 nucleotides MPMX20_04269: MPMX20_04269 - Nitrite reductase [NAD(P)H], at 4,451,142 to 4,453,685 _04269 MPMX20_04270: MPMX20_04270 - Nitrite reductase (NADH) small subunit, at 4,453,682 to 4,454,008 _04270 MPMX20_04271: MPMX20_04271 - Siroheme synthase, at 4,454,145 to 4,455,518 _04271 MPMX20_04272: MPMX20_04272 - hypothetical protein, at 4,455,664 to 4,455,834 _04272 MPMX20_04273: MPMX20_04273 - Tryptophan--tRNA ligase, at 4,455,935 to 4,456,939 _04273 Position (kb) 4454 4455 4456Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4453.148 kb on - strand, within MPMX20_04269at 4453.208 kb on + strand, within MPMX20_04269at 4453.208 kb on + strand, within MPMX20_04269at 4453.208 kb on + strand, within MPMX20_04269at 4453.216 kb on - strand, within MPMX20_04269at 4453.218 kb on - strand, within MPMX20_04269at 4453.242 kb on + strand, within MPMX20_04269at 4453.242 kb on + strand, within MPMX20_04269at 4453.288 kb on + strand, within MPMX20_04269at 4453.288 kb on + strand, within MPMX20_04269at 4453.296 kb on - strand, within MPMX20_04269at 4453.308 kb on + strand, within MPMX20_04269at 4453.338 kb on + strand, within MPMX20_04269at 4453.353 kb on - strand, within MPMX20_04269at 4453.392 kb on - strand, within MPMX20_04269at 4453.394 kb on + strand, within MPMX20_04269at 4453.409 kb on + strand, within MPMX20_04269at 4453.633 kb on - strandat 4453.692 kb on + strandat 4453.728 kb on + strand, within MPMX20_04270at 4453.740 kb on + strand, within MPMX20_04270at 4453.747 kb on + strand, within MPMX20_04270at 4453.815 kb on - strand, within MPMX20_04270at 4453.862 kb on + strand, within MPMX20_04270at 4453.870 kb on + strand, within MPMX20_04270at 4453.927 kb on + strand, within MPMX20_04270at 4453.953 kb on - strand, within MPMX20_04270at 4453.960 kb on + strand, within MPMX20_04270at 4453.960 kb on + strand, within MPMX20_04270at 4453.968 kb on - strand, within MPMX20_04270at 4453.999 kb on - strandat 4454.003 kb on + strandat 4454.003 kb on + strandat 4454.004 kb on - strandat 4454.033 kb on + strandat 4454.041 kb on - strandat 4454.078 kb on + strandat 4454.268 kb on + strandat 4454.276 kb on - strandat 4454.324 kb on + strand, within MPMX20_04271at 4454.335 kb on + strand, within MPMX20_04271at 4454.498 kb on - strand, within MPMX20_04271at 4454.622 kb on - strand, within MPMX20_04271at 4454.648 kb on - strand, within MPMX20_04271at 4454.812 kb on - strand, within MPMX20_04271at 4454.880 kb on + strand, within MPMX20_04271at 4454.971 kb on - strand, within MPMX20_04271at 4454.989 kb on - strand, within MPMX20_04271at 4455.038 kb on + strand, within MPMX20_04271at 4455.038 kb on + strand, within MPMX20_04271at 4455.038 kb on + strand, within MPMX20_04271at 4455.046 kb on - strand, within MPMX20_04271at 4455.149 kb on - strand, within MPMX20_04271at 4455.149 kb on - strand, within MPMX20_04271at 4455.190 kb on - strand, within MPMX20_04271at 4455.247 kb on + strand, within MPMX20_04271at 4455.247 kb on + strand, within MPMX20_04271at 4455.292 kb on + strand, within MPMX20_04271at 4455.292 kb on + strand, within MPMX20_04271at 4455.334 kb on - strand, within MPMX20_04271at 4455.337 kb on + strand, within MPMX20_04271at 4455.337 kb on + strand, within MPMX20_04271at 4455.347 kb on + strand, within MPMX20_04271at 4455.355 kb on - strand, within MPMX20_04271at 4455.355 kb on - strand, within MPMX20_04271at 4455.382 kb on + strandat 4455.382 kb on + strandat 4455.425 kb on - strandat 4455.449 kb on - strandat 4455.483 kb on - strandat 4455.483 kb on - strandat 4455.533 kb on + strandat 4455.688 kb on + strand, within MPMX20_04272at 4455.766 kb on - strand, within MPMX20_04272at 4455.835 kb on + strandat 4455.917 kb on + strandat 4455.932 kb on + strandat 4455.940 kb on - strandat 4455.972 kb on + strandat 4456.076 kb on - strand, within MPMX20_04273at 4456.091 kb on + strand, within MPMX20_04273at 4456.116 kb on + strand, within MPMX20_04273at 4456.156 kb on - strand, within MPMX20_04273at 4456.177 kb on - strand, within MPMX20_04273at 4456.177 kb on - strand, within MPMX20_04273at 4456.177 kb on - strand, within MPMX20_04273at 4456.204 kb on + strand, within MPMX20_04273at 4456.218 kb on + strand, within MPMX20_04273at 4456.223 kb on + strand, within MPMX20_04273at 4456.362 kb on - strand, within MPMX20_04273at 4456.375 kb on - strand, within MPMX20_04273at 4456.420 kb on - strand, within MPMX20_04273at 4456.431 kb on + strand, within MPMX20_04273at 4456.431 kb on + strand, within MPMX20_04273at 4456.439 kb on - strand, within MPMX20_04273at 4456.474 kb on + strand, within MPMX20_04273

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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4,453,148 - MPMX20_04269 0.79 +0.5
4,453,208 + MPMX20_04269 0.81 -0.2
4,453,208 + MPMX20_04269 0.81 +0.1
4,453,208 + MPMX20_04269 0.81 +0.1
4,453,216 - MPMX20_04269 0.82 -0.3
4,453,218 - MPMX20_04269 0.82 +1.5
4,453,242 + MPMX20_04269 0.83 -0.1
4,453,242 + MPMX20_04269 0.83 +1.3
4,453,288 + MPMX20_04269 0.84 +0.1
4,453,288 + MPMX20_04269 0.84 +0.4
4,453,296 - MPMX20_04269 0.85 +0.5
4,453,308 + MPMX20_04269 0.85 -1.8
4,453,338 + MPMX20_04269 0.86 +0.7
4,453,353 - MPMX20_04269 0.87 +1.2
4,453,392 - MPMX20_04269 0.88 -0.7
4,453,394 + MPMX20_04269 0.89 +0.8
4,453,409 + MPMX20_04269 0.89 -0.3
4,453,633 - +2.8
4,453,692 + -2.3
4,453,728 + MPMX20_04270 0.14 +4.1
4,453,740 + MPMX20_04270 0.18 +0.9
4,453,747 + MPMX20_04270 0.20 +0.9
4,453,815 - MPMX20_04270 0.41 +1.5
4,453,862 + MPMX20_04270 0.55 -0.2
4,453,870 + MPMX20_04270 0.57 +0.8
4,453,927 + MPMX20_04270 0.75 -0.2
4,453,953 - MPMX20_04270 0.83 +1.7
4,453,960 + MPMX20_04270 0.85 -2.3
4,453,960 + MPMX20_04270 0.85 +2.0
4,453,968 - MPMX20_04270 0.87 +0.6
4,453,999 - +0.0
4,454,003 + -2.0
4,454,003 + +2.3
4,454,004 - +0.5
4,454,033 + -0.7
4,454,041 - -0.3
4,454,078 + +0.8
4,454,268 + +0.9
4,454,276 - +0.1
4,454,324 + MPMX20_04271 0.13 -0.1
4,454,335 + MPMX20_04271 0.14 -0.4
4,454,498 - MPMX20_04271 0.26 +3.2
4,454,622 - MPMX20_04271 0.35 +0.8
4,454,648 - MPMX20_04271 0.37 +1.1
4,454,812 - MPMX20_04271 0.49 -1.1
4,454,880 + MPMX20_04271 0.53 +0.4
4,454,971 - MPMX20_04271 0.60 -0.7
4,454,989 - MPMX20_04271 0.61 -0.5
4,455,038 + MPMX20_04271 0.65 +0.2
4,455,038 + MPMX20_04271 0.65 -0.2
4,455,038 + MPMX20_04271 0.65 -0.4
4,455,046 - MPMX20_04271 0.66 -1.3
4,455,149 - MPMX20_04271 0.73 -1.7
4,455,149 - MPMX20_04271 0.73 +0.3
4,455,190 - MPMX20_04271 0.76 -1.1
4,455,247 + MPMX20_04271 0.80 +0.3
4,455,247 + MPMX20_04271 0.80 +0.9
4,455,292 + MPMX20_04271 0.83 +0.1
4,455,292 + MPMX20_04271 0.83 +0.1
4,455,334 - MPMX20_04271 0.87 -2.7
4,455,337 + MPMX20_04271 0.87 -1.6
4,455,337 + MPMX20_04271 0.87 -0.9
4,455,347 + MPMX20_04271 0.87 -0.5
4,455,355 - MPMX20_04271 0.88 -1.5
4,455,355 - MPMX20_04271 0.88 +0.4
4,455,382 + +2.2
4,455,382 + -1.1
4,455,425 - -0.2
4,455,449 - -0.2
4,455,483 - +0.8
4,455,483 - +3.7
4,455,533 + -0.2
4,455,688 + MPMX20_04272 0.14 -0.1
4,455,766 - MPMX20_04272 0.60 -0.9
4,455,835 + -1.1
4,455,917 + -0.3
4,455,932 + -1.1
4,455,940 - +2.7
4,455,972 + +3.1
4,456,076 - MPMX20_04273 0.14 +1.1
4,456,091 + MPMX20_04273 0.16 +2.1
4,456,116 + MPMX20_04273 0.18 +1.5
4,456,156 - MPMX20_04273 0.22 -1.3
4,456,177 - MPMX20_04273 0.24 -0.3
4,456,177 - MPMX20_04273 0.24 -0.1
4,456,177 - MPMX20_04273 0.24 +1.1
4,456,204 + MPMX20_04273 0.27 +0.7
4,456,218 + MPMX20_04273 0.28 -1.1
4,456,223 + MPMX20_04273 0.29 -1.0
4,456,362 - MPMX20_04273 0.42 +4.9
4,456,375 - MPMX20_04273 0.44 +3.1
4,456,420 - MPMX20_04273 0.48 -1.5
4,456,431 + MPMX20_04273 0.49 +0.5
4,456,431 + MPMX20_04273 0.49 -1.0
4,456,439 - MPMX20_04273 0.50 +1.7
4,456,474 + MPMX20_04273 0.54 +1.5

Or see this region's nucleotide sequence