Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04251

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04250 and MPMX20_04251 are separated by 122 nucleotidesMPMX20_04251 and MPMX20_04252 overlap by 4 nucleotidesMPMX20_04252 and MPMX20_04253 overlap by 8 nucleotides MPMX20_04250: MPMX20_04250 - hypothetical protein, at 4,433,325 to 4,434,284 _04250 MPMX20_04251: MPMX20_04251 - hypothetical protein, at 4,434,407 to 4,435,210 _04251 MPMX20_04252: MPMX20_04252 - Malonyl-S-ACP:biotin-protein carboxyltransferase MADC, at 4,435,207 to 4,436,040 _04252 MPMX20_04253: MPMX20_04253 - Malonate decarboxylase acyl carrier protein, at 4,436,033 to 4,436,332 _04253 Position (kb) 4434 4435 4436Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 4433.415 kb on - strandat 4433.422 kb on + strand, within MPMX20_04250at 4433.423 kb on - strand, within MPMX20_04250at 4433.441 kb on - strand, within MPMX20_04250at 4433.472 kb on + strand, within MPMX20_04250at 4433.477 kb on + strand, within MPMX20_04250at 4433.480 kb on - strand, within MPMX20_04250at 4433.492 kb on + strand, within MPMX20_04250at 4433.492 kb on + strand, within MPMX20_04250at 4433.500 kb on - strand, within MPMX20_04250at 4433.505 kb on - strand, within MPMX20_04250at 4433.507 kb on - strand, within MPMX20_04250at 4433.555 kb on + strand, within MPMX20_04250at 4433.564 kb on + strand, within MPMX20_04250at 4433.592 kb on - strand, within MPMX20_04250at 4433.621 kb on - strand, within MPMX20_04250at 4433.623 kb on + strand, within MPMX20_04250at 4433.623 kb on + strand, within MPMX20_04250at 4433.623 kb on + strand, within MPMX20_04250at 4433.623 kb on + strand, within MPMX20_04250at 4433.631 kb on - strand, within MPMX20_04250at 4433.631 kb on - strand, within MPMX20_04250at 4433.631 kb on - strand, within MPMX20_04250at 4433.774 kb on - strand, within MPMX20_04250at 4433.808 kb on - strand, within MPMX20_04250at 4433.898 kb on + strand, within MPMX20_04250at 4433.961 kb on + strand, within MPMX20_04250at 4433.989 kb on - strand, within MPMX20_04250at 4434.020 kb on + strand, within MPMX20_04250at 4434.069 kb on + strand, within MPMX20_04250at 4434.103 kb on - strand, within MPMX20_04250at 4434.116 kb on + strand, within MPMX20_04250at 4434.117 kb on + strand, within MPMX20_04250at 4434.125 kb on - strand, within MPMX20_04250at 4434.130 kb on + strand, within MPMX20_04250at 4434.130 kb on + strand, within MPMX20_04250at 4434.130 kb on + strand, within MPMX20_04250at 4434.130 kb on + strand, within MPMX20_04250at 4434.138 kb on - strand, within MPMX20_04250at 4434.138 kb on - strand, within MPMX20_04250at 4434.138 kb on - strand, within MPMX20_04250at 4434.138 kb on - strand, within MPMX20_04250at 4434.138 kb on - strand, within MPMX20_04250at 4434.214 kb on - strandat 4434.234 kb on - strandat 4434.365 kb on + strandat 4434.384 kb on - strandat 4434.488 kb on + strand, within MPMX20_04251at 4434.488 kb on + strand, within MPMX20_04251at 4434.488 kb on + strand, within MPMX20_04251at 4434.491 kb on - strand, within MPMX20_04251at 4434.496 kb on - strand, within MPMX20_04251at 4434.496 kb on - strand, within MPMX20_04251at 4434.510 kb on + strand, within MPMX20_04251at 4434.510 kb on + strand, within MPMX20_04251at 4434.525 kb on + strand, within MPMX20_04251at 4434.525 kb on + strand, within MPMX20_04251at 4434.533 kb on - strand, within MPMX20_04251at 4434.535 kb on + strand, within MPMX20_04251at 4434.544 kb on - strand, within MPMX20_04251at 4434.603 kb on - strand, within MPMX20_04251at 4434.620 kb on + strand, within MPMX20_04251at 4434.672 kb on - strand, within MPMX20_04251at 4434.691 kb on + strand, within MPMX20_04251at 4434.698 kb on + strand, within MPMX20_04251at 4434.698 kb on + strand, within MPMX20_04251at 4434.734 kb on - strand, within MPMX20_04251at 4434.802 kb on + strand, within MPMX20_04251at 4434.838 kb on + strand, within MPMX20_04251at 4434.850 kb on - strand, within MPMX20_04251at 4434.850 kb on - strand, within MPMX20_04251at 4434.856 kb on - strand, within MPMX20_04251at 4434.954 kb on + strand, within MPMX20_04251at 4434.962 kb on - strand, within MPMX20_04251at 4434.967 kb on - strand, within MPMX20_04251at 4434.976 kb on + strand, within MPMX20_04251at 4435.008 kb on + strand, within MPMX20_04251at 4435.129 kb on + strand, within MPMX20_04251at 4435.137 kb on - strandat 4435.137 kb on - strandat 4435.137 kb on - strandat 4435.189 kb on + strandat 4435.232 kb on + strandat 4435.240 kb on - strandat 4435.240 kb on - strandat 4435.240 kb on - strandat 4435.247 kb on + strandat 4435.257 kb on + strandat 4435.257 kb on + strandat 4435.257 kb on + strandat 4435.257 kb on + strandat 4435.379 kb on + strand, within MPMX20_04252at 4435.462 kb on + strand, within MPMX20_04252at 4435.482 kb on - strand, within MPMX20_04252at 4435.497 kb on + strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.554 kb on + strand, within MPMX20_04252at 4435.625 kb on - strand, within MPMX20_04252at 4435.627 kb on + strand, within MPMX20_04252at 4435.640 kb on - strand, within MPMX20_04252at 4435.822 kb on - strand, within MPMX20_04252at 4435.844 kb on + strand, within MPMX20_04252at 4435.902 kb on + strand, within MPMX20_04252at 4435.904 kb on + strand, within MPMX20_04252at 4435.907 kb on - strand, within MPMX20_04252at 4436.040 kb on + strandat 4436.042 kb on + strandat 4436.042 kb on + strandat 4436.043 kb on - strandat 4436.049 kb on - strandat 4436.050 kb on - strandat 4436.144 kb on + strand, within MPMX20_04253

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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4,433,415 - -0.1
4,433,422 + MPMX20_04250 0.10 -0.0
4,433,423 - MPMX20_04250 0.10 +2.1
4,433,441 - MPMX20_04250 0.12 -0.7
4,433,472 + MPMX20_04250 0.15 +4.7
4,433,477 + MPMX20_04250 0.16 -1.1
4,433,480 - MPMX20_04250 0.16 -0.1
4,433,492 + MPMX20_04250 0.17 -0.5
4,433,492 + MPMX20_04250 0.17 +1.0
4,433,500 - MPMX20_04250 0.18 -0.6
4,433,505 - MPMX20_04250 0.19 -1.6
4,433,507 - MPMX20_04250 0.19 -1.5
4,433,555 + MPMX20_04250 0.24 +1.4
4,433,564 + MPMX20_04250 0.25 +1.5
4,433,592 - MPMX20_04250 0.28 -0.4
4,433,621 - MPMX20_04250 0.31 -0.2
4,433,623 + MPMX20_04250 0.31 +0.8
4,433,623 + MPMX20_04250 0.31 -1.8
4,433,623 + MPMX20_04250 0.31 +1.6
4,433,623 + MPMX20_04250 0.31 +1.6
4,433,631 - MPMX20_04250 0.32 -0.3
4,433,631 - MPMX20_04250 0.32 -1.6
4,433,631 - MPMX20_04250 0.32 +0.9
4,433,774 - MPMX20_04250 0.47 -0.6
4,433,808 - MPMX20_04250 0.50 +0.8
4,433,898 + MPMX20_04250 0.60 -1.7
4,433,961 + MPMX20_04250 0.66 -0.4
4,433,989 - MPMX20_04250 0.69 +0.3
4,434,020 + MPMX20_04250 0.72 -0.8
4,434,069 + MPMX20_04250 0.78 -0.5
4,434,103 - MPMX20_04250 0.81 +0.1
4,434,116 + MPMX20_04250 0.82 -2.3
4,434,117 + MPMX20_04250 0.82 -0.3
4,434,125 - MPMX20_04250 0.83 -1.9
4,434,130 + MPMX20_04250 0.84 +0.2
4,434,130 + MPMX20_04250 0.84 +1.5
4,434,130 + MPMX20_04250 0.84 -0.1
4,434,130 + MPMX20_04250 0.84 +0.9
4,434,138 - MPMX20_04250 0.85 +0.8
4,434,138 - MPMX20_04250 0.85 +1.3
4,434,138 - MPMX20_04250 0.85 +1.1
4,434,138 - MPMX20_04250 0.85 -1.3
4,434,138 - MPMX20_04250 0.85 +0.2
4,434,214 - -1.5
4,434,234 - -1.7
4,434,365 + +0.0
4,434,384 - -1.0
4,434,488 + MPMX20_04251 0.10 +7.9
4,434,488 + MPMX20_04251 0.10 +0.8
4,434,488 + MPMX20_04251 0.10 -0.3
4,434,491 - MPMX20_04251 0.10 +0.2
4,434,496 - MPMX20_04251 0.11 +2.5
4,434,496 - MPMX20_04251 0.11 +3.1
4,434,510 + MPMX20_04251 0.13 +1.1
4,434,510 + MPMX20_04251 0.13 -0.9
4,434,525 + MPMX20_04251 0.15 +0.3
4,434,525 + MPMX20_04251 0.15 -0.8
4,434,533 - MPMX20_04251 0.16 -0.5
4,434,535 + MPMX20_04251 0.16 -0.8
4,434,544 - MPMX20_04251 0.17 -0.5
4,434,603 - MPMX20_04251 0.24 -0.7
4,434,620 + MPMX20_04251 0.26 -0.6
4,434,672 - MPMX20_04251 0.33 -1.1
4,434,691 + MPMX20_04251 0.35 +0.9
4,434,698 + MPMX20_04251 0.36 +1.4
4,434,698 + MPMX20_04251 0.36 +0.8
4,434,734 - MPMX20_04251 0.41 +1.9
4,434,802 + MPMX20_04251 0.49 +0.3
4,434,838 + MPMX20_04251 0.54 -1.5
4,434,850 - MPMX20_04251 0.55 -0.2
4,434,850 - MPMX20_04251 0.55 +1.8
4,434,856 - MPMX20_04251 0.56 +0.1
4,434,954 + MPMX20_04251 0.68 +0.3
4,434,962 - MPMX20_04251 0.69 -0.3
4,434,967 - MPMX20_04251 0.70 -1.2
4,434,976 + MPMX20_04251 0.71 +1.1
4,435,008 + MPMX20_04251 0.75 +0.8
4,435,129 + MPMX20_04251 0.90 -0.5
4,435,137 - +0.5
4,435,137 - +0.1
4,435,137 - +1.3
4,435,189 + -0.1
4,435,232 + +3.1
4,435,240 - -0.1
4,435,240 - -2.4
4,435,240 - +3.1
4,435,247 + -0.5
4,435,257 + +0.4
4,435,257 + -0.3
4,435,257 + -0.4
4,435,257 + +0.1
4,435,379 + MPMX20_04252 0.21 -0.1
4,435,462 + MPMX20_04252 0.31 +0.4
4,435,482 - MPMX20_04252 0.33 -0.6
4,435,497 + MPMX20_04252 0.35 -0.9
4,435,505 - MPMX20_04252 0.36 +0.1
4,435,505 - MPMX20_04252 0.36 -1.7
4,435,505 - MPMX20_04252 0.36 -1.1
4,435,505 - MPMX20_04252 0.36 +0.4
4,435,505 - MPMX20_04252 0.36 -0.3
4,435,505 - MPMX20_04252 0.36 +0.6
4,435,505 - MPMX20_04252 0.36 +0.5
4,435,554 + MPMX20_04252 0.42 -1.7
4,435,625 - MPMX20_04252 0.50 -0.4
4,435,627 + MPMX20_04252 0.50 +1.7
4,435,640 - MPMX20_04252 0.52 +0.8
4,435,822 - MPMX20_04252 0.74 +1.1
4,435,844 + MPMX20_04252 0.76 +0.3
4,435,902 + MPMX20_04252 0.83 +2.3
4,435,904 + MPMX20_04252 0.84 -0.6
4,435,907 - MPMX20_04252 0.84 -1.9
4,436,040 + +3.1
4,436,042 + -2.3
4,436,042 + +0.2
4,436,043 - -0.1
4,436,049 - +0.3
4,436,050 - -1.5
4,436,144 + MPMX20_04253 0.37 +1.1

Or see this region's nucleotide sequence