Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04250 and MPMX20_04251 are separated by 122 nucleotides MPMX20_04251 and MPMX20_04252 overlap by 4 nucleotides MPMX20_04252 and MPMX20_04253 overlap by 8 nucleotides
MPMX20_04250: MPMX20_04250 - hypothetical protein, at 4,433,325 to 4,434,284
_04250
MPMX20_04251: MPMX20_04251 - hypothetical protein, at 4,434,407 to 4,435,210
_04251
MPMX20_04252: MPMX20_04252 - Malonyl-S-ACP:biotin-protein carboxyltransferase MADC, at 4,435,207 to 4,436,040
_04252
MPMX20_04253: MPMX20_04253 - Malonate decarboxylase acyl carrier protein, at 4,436,033 to 4,436,332
_04253
Position (kb)
4434
4435
4436 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 4433.415 kb on - strand at 4433.422 kb on + strand, within MPMX20_04250 at 4433.423 kb on - strand, within MPMX20_04250 at 4433.441 kb on - strand, within MPMX20_04250 at 4433.472 kb on + strand, within MPMX20_04250 at 4433.477 kb on + strand, within MPMX20_04250 at 4433.480 kb on - strand, within MPMX20_04250 at 4433.492 kb on + strand, within MPMX20_04250 at 4433.492 kb on + strand, within MPMX20_04250 at 4433.500 kb on - strand, within MPMX20_04250 at 4433.505 kb on - strand, within MPMX20_04250 at 4433.507 kb on - strand, within MPMX20_04250 at 4433.555 kb on + strand, within MPMX20_04250 at 4433.564 kb on + strand, within MPMX20_04250 at 4433.592 kb on - strand, within MPMX20_04250 at 4433.621 kb on - strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.631 kb on - strand, within MPMX20_04250 at 4433.631 kb on - strand, within MPMX20_04250 at 4433.631 kb on - strand, within MPMX20_04250 at 4433.774 kb on - strand, within MPMX20_04250 at 4433.808 kb on - strand, within MPMX20_04250 at 4433.898 kb on + strand, within MPMX20_04250 at 4433.961 kb on + strand, within MPMX20_04250 at 4433.989 kb on - strand, within MPMX20_04250 at 4434.020 kb on + strand, within MPMX20_04250 at 4434.069 kb on + strand, within MPMX20_04250 at 4434.103 kb on - strand, within MPMX20_04250 at 4434.116 kb on + strand, within MPMX20_04250 at 4434.117 kb on + strand, within MPMX20_04250 at 4434.125 kb on - strand, within MPMX20_04250 at 4434.130 kb on + strand, within MPMX20_04250 at 4434.130 kb on + strand, within MPMX20_04250 at 4434.130 kb on + strand, within MPMX20_04250 at 4434.130 kb on + strand, within MPMX20_04250 at 4434.138 kb on - strand, within MPMX20_04250 at 4434.138 kb on - strand, within MPMX20_04250 at 4434.138 kb on - strand, within MPMX20_04250 at 4434.138 kb on - strand, within MPMX20_04250 at 4434.138 kb on - strand, within MPMX20_04250 at 4434.214 kb on - strand at 4434.234 kb on - strand at 4434.365 kb on + strand at 4434.384 kb on - strand at 4434.488 kb on + strand, within MPMX20_04251 at 4434.488 kb on + strand, within MPMX20_04251 at 4434.488 kb on + strand, within MPMX20_04251 at 4434.491 kb on - strand, within MPMX20_04251 at 4434.496 kb on - strand, within MPMX20_04251 at 4434.496 kb on - strand, within MPMX20_04251 at 4434.510 kb on + strand, within MPMX20_04251 at 4434.510 kb on + strand, within MPMX20_04251 at 4434.525 kb on + strand, within MPMX20_04251 at 4434.525 kb on + strand, within MPMX20_04251 at 4434.533 kb on - strand, within MPMX20_04251 at 4434.535 kb on + strand, within MPMX20_04251 at 4434.544 kb on - strand, within MPMX20_04251 at 4434.603 kb on - strand, within MPMX20_04251 at 4434.620 kb on + strand, within MPMX20_04251 at 4434.672 kb on - strand, within MPMX20_04251 at 4434.691 kb on + strand, within MPMX20_04251 at 4434.698 kb on + strand, within MPMX20_04251 at 4434.698 kb on + strand, within MPMX20_04251 at 4434.734 kb on - strand, within MPMX20_04251 at 4434.802 kb on + strand, within MPMX20_04251 at 4434.838 kb on + strand, within MPMX20_04251 at 4434.850 kb on - strand, within MPMX20_04251 at 4434.850 kb on - strand, within MPMX20_04251 at 4434.856 kb on - strand, within MPMX20_04251 at 4434.954 kb on + strand, within MPMX20_04251 at 4434.962 kb on - strand, within MPMX20_04251 at 4434.967 kb on - strand, within MPMX20_04251 at 4434.976 kb on + strand, within MPMX20_04251 at 4435.008 kb on + strand, within MPMX20_04251 at 4435.129 kb on + strand, within MPMX20_04251 at 4435.137 kb on - strand at 4435.137 kb on - strand at 4435.137 kb on - strand at 4435.189 kb on + strand at 4435.232 kb on + strand at 4435.240 kb on - strand at 4435.240 kb on - strand at 4435.240 kb on - strand at 4435.247 kb on + strand at 4435.257 kb on + strand at 4435.257 kb on + strand at 4435.257 kb on + strand at 4435.257 kb on + strand at 4435.379 kb on + strand, within MPMX20_04252 at 4435.462 kb on + strand, within MPMX20_04252 at 4435.482 kb on - strand, within MPMX20_04252 at 4435.497 kb on + strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.554 kb on + strand, within MPMX20_04252 at 4435.625 kb on - strand, within MPMX20_04252 at 4435.627 kb on + strand, within MPMX20_04252 at 4435.640 kb on - strand, within MPMX20_04252 at 4435.822 kb on - strand, within MPMX20_04252 at 4435.844 kb on + strand, within MPMX20_04252 at 4435.902 kb on + strand, within MPMX20_04252 at 4435.904 kb on + strand, within MPMX20_04252 at 4435.907 kb on - strand, within MPMX20_04252 at 4436.040 kb on + strand at 4436.042 kb on + strand at 4436.042 kb on + strand at 4436.043 kb on - strand at 4436.049 kb on - strand at 4436.050 kb on - strand at 4436.144 kb on + strand, within MPMX20_04253
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 4,433,415 - -0.1 4,433,422 + MPMX20_04250 0.10 -0.0 4,433,423 - MPMX20_04250 0.10 +2.1 4,433,441 - MPMX20_04250 0.12 -0.7 4,433,472 + MPMX20_04250 0.15 +4.7 4,433,477 + MPMX20_04250 0.16 -1.1 4,433,480 - MPMX20_04250 0.16 -0.1 4,433,492 + MPMX20_04250 0.17 -0.5 4,433,492 + MPMX20_04250 0.17 +1.0 4,433,500 - MPMX20_04250 0.18 -0.6 4,433,505 - MPMX20_04250 0.19 -1.6 4,433,507 - MPMX20_04250 0.19 -1.5 4,433,555 + MPMX20_04250 0.24 +1.4 4,433,564 + MPMX20_04250 0.25 +1.5 4,433,592 - MPMX20_04250 0.28 -0.4 4,433,621 - MPMX20_04250 0.31 -0.2 4,433,623 + MPMX20_04250 0.31 +0.8 4,433,623 + MPMX20_04250 0.31 -1.8 4,433,623 + MPMX20_04250 0.31 +1.6 4,433,623 + MPMX20_04250 0.31 +1.6 4,433,631 - MPMX20_04250 0.32 -0.3 4,433,631 - MPMX20_04250 0.32 -1.6 4,433,631 - MPMX20_04250 0.32 +0.9 4,433,774 - MPMX20_04250 0.47 -0.6 4,433,808 - MPMX20_04250 0.50 +0.8 4,433,898 + MPMX20_04250 0.60 -1.7 4,433,961 + MPMX20_04250 0.66 -0.4 4,433,989 - MPMX20_04250 0.69 +0.3 4,434,020 + MPMX20_04250 0.72 -0.8 4,434,069 + MPMX20_04250 0.78 -0.5 4,434,103 - MPMX20_04250 0.81 +0.1 4,434,116 + MPMX20_04250 0.82 -2.3 4,434,117 + MPMX20_04250 0.82 -0.3 4,434,125 - MPMX20_04250 0.83 -1.9 4,434,130 + MPMX20_04250 0.84 +0.2 4,434,130 + MPMX20_04250 0.84 +1.5 4,434,130 + MPMX20_04250 0.84 -0.1 4,434,130 + MPMX20_04250 0.84 +0.9 4,434,138 - MPMX20_04250 0.85 +0.8 4,434,138 - MPMX20_04250 0.85 +1.3 4,434,138 - MPMX20_04250 0.85 +1.1 4,434,138 - MPMX20_04250 0.85 -1.3 4,434,138 - MPMX20_04250 0.85 +0.2 4,434,214 - -1.5 4,434,234 - -1.7 4,434,365 + +0.0 4,434,384 - -1.0 4,434,488 + MPMX20_04251 0.10 +7.9 4,434,488 + MPMX20_04251 0.10 +0.8 4,434,488 + MPMX20_04251 0.10 -0.3 4,434,491 - MPMX20_04251 0.10 +0.2 4,434,496 - MPMX20_04251 0.11 +2.5 4,434,496 - MPMX20_04251 0.11 +3.1 4,434,510 + MPMX20_04251 0.13 +1.1 4,434,510 + MPMX20_04251 0.13 -0.9 4,434,525 + MPMX20_04251 0.15 +0.3 4,434,525 + MPMX20_04251 0.15 -0.8 4,434,533 - MPMX20_04251 0.16 -0.5 4,434,535 + MPMX20_04251 0.16 -0.8 4,434,544 - MPMX20_04251 0.17 -0.5 4,434,603 - MPMX20_04251 0.24 -0.7 4,434,620 + MPMX20_04251 0.26 -0.6 4,434,672 - MPMX20_04251 0.33 -1.1 4,434,691 + MPMX20_04251 0.35 +0.9 4,434,698 + MPMX20_04251 0.36 +1.4 4,434,698 + MPMX20_04251 0.36 +0.8 4,434,734 - MPMX20_04251 0.41 +1.9 4,434,802 + MPMX20_04251 0.49 +0.3 4,434,838 + MPMX20_04251 0.54 -1.5 4,434,850 - MPMX20_04251 0.55 -0.2 4,434,850 - MPMX20_04251 0.55 +1.8 4,434,856 - MPMX20_04251 0.56 +0.1 4,434,954 + MPMX20_04251 0.68 +0.3 4,434,962 - MPMX20_04251 0.69 -0.3 4,434,967 - MPMX20_04251 0.70 -1.2 4,434,976 + MPMX20_04251 0.71 +1.1 4,435,008 + MPMX20_04251 0.75 +0.8 4,435,129 + MPMX20_04251 0.90 -0.5 4,435,137 - +0.5 4,435,137 - +0.1 4,435,137 - +1.3 4,435,189 + -0.1 4,435,232 + +3.1 4,435,240 - -0.1 4,435,240 - -2.4 4,435,240 - +3.1 4,435,247 + -0.5 4,435,257 + +0.4 4,435,257 + -0.3 4,435,257 + -0.4 4,435,257 + +0.1 4,435,379 + MPMX20_04252 0.21 -0.1 4,435,462 + MPMX20_04252 0.31 +0.4 4,435,482 - MPMX20_04252 0.33 -0.6 4,435,497 + MPMX20_04252 0.35 -0.9 4,435,505 - MPMX20_04252 0.36 +0.1 4,435,505 - MPMX20_04252 0.36 -1.7 4,435,505 - MPMX20_04252 0.36 -1.1 4,435,505 - MPMX20_04252 0.36 +0.4 4,435,505 - MPMX20_04252 0.36 -0.3 4,435,505 - MPMX20_04252 0.36 +0.6 4,435,505 - MPMX20_04252 0.36 +0.5 4,435,554 + MPMX20_04252 0.42 -1.7 4,435,625 - MPMX20_04252 0.50 -0.4 4,435,627 + MPMX20_04252 0.50 +1.7 4,435,640 - MPMX20_04252 0.52 +0.8 4,435,822 - MPMX20_04252 0.74 +1.1 4,435,844 + MPMX20_04252 0.76 +0.3 4,435,902 + MPMX20_04252 0.83 +2.3 4,435,904 + MPMX20_04252 0.84 -0.6 4,435,907 - MPMX20_04252 0.84 -1.9 4,436,040 + +3.1 4,436,042 + -2.3 4,436,042 + +0.2 4,436,043 - -0.1 4,436,049 - +0.3 4,436,050 - -1.5 4,436,144 + MPMX20_04253 0.37 +1.1
Or see this region's nucleotide sequence