Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04118

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04117 and MPMX20_04118 are separated by 266 nucleotidesMPMX20_04118 and MPMX20_04119 are separated by 111 nucleotidesMPMX20_04119 and MPMX20_04120 overlap by 1 nucleotides MPMX20_04117: MPMX20_04117 - Lipopolysaccharide export system permease protein LptF, at 4,309,535 to 4,310,635 _04117 MPMX20_04118: MPMX20_04118 - Cytosol aminopeptidase, at 4,310,902 to 4,312,413 _04118 MPMX20_04119: MPMX20_04119 - DNA polymerase III subunit chi, at 4,312,525 to 4,312,968 _04119 MPMX20_04120: MPMX20_04120 - Valine--tRNA ligase, at 4,312,968 to 4,315,823 _04120 Position (kb) 4310 4311 4312 4313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 4310.857 kb on + strandat 4310.974 kb on - strandat 4311.012 kb on + strandat 4311.035 kb on - strandat 4311.050 kb on - strandat 4311.060 kb on + strand, within MPMX20_04118at 4311.073 kb on - strand, within MPMX20_04118at 4311.073 kb on - strand, within MPMX20_04118at 4311.083 kb on - strand, within MPMX20_04118at 4311.102 kb on - strand, within MPMX20_04118at 4311.142 kb on - strand, within MPMX20_04118at 4311.149 kb on + strand, within MPMX20_04118at 4311.157 kb on - strand, within MPMX20_04118at 4311.161 kb on - strand, within MPMX20_04118at 4311.173 kb on + strand, within MPMX20_04118at 4311.196 kb on - strand, within MPMX20_04118at 4311.201 kb on + strand, within MPMX20_04118at 4311.201 kb on + strand, within MPMX20_04118at 4311.257 kb on - strand, within MPMX20_04118at 4311.258 kb on + strand, within MPMX20_04118at 4311.279 kb on + strand, within MPMX20_04118at 4311.327 kb on + strand, within MPMX20_04118at 4311.363 kb on + strand, within MPMX20_04118at 4311.363 kb on + strand, within MPMX20_04118at 4311.363 kb on + strand, within MPMX20_04118at 4311.407 kb on + strand, within MPMX20_04118at 4311.421 kb on + strand, within MPMX20_04118at 4311.421 kb on + strand, within MPMX20_04118at 4311.429 kb on - strand, within MPMX20_04118at 4311.429 kb on - strand, within MPMX20_04118at 4311.458 kb on - strand, within MPMX20_04118at 4311.492 kb on - strand, within MPMX20_04118at 4311.545 kb on - strand, within MPMX20_04118at 4311.660 kb on + strand, within MPMX20_04118at 4311.665 kb on + strand, within MPMX20_04118at 4311.680 kb on - strand, within MPMX20_04118at 4311.705 kb on + strand, within MPMX20_04118at 4311.711 kb on + strand, within MPMX20_04118at 4311.758 kb on + strand, within MPMX20_04118at 4311.796 kb on + strand, within MPMX20_04118at 4311.835 kb on - strand, within MPMX20_04118at 4311.869 kb on - strand, within MPMX20_04118at 4311.876 kb on + strand, within MPMX20_04118at 4311.935 kb on + strand, within MPMX20_04118at 4311.945 kb on + strand, within MPMX20_04118at 4311.951 kb on - strand, within MPMX20_04118at 4311.966 kb on - strand, within MPMX20_04118at 4311.976 kb on - strand, within MPMX20_04118at 4311.985 kb on + strand, within MPMX20_04118at 4311.990 kb on + strand, within MPMX20_04118at 4311.998 kb on - strand, within MPMX20_04118at 4312.010 kb on + strand, within MPMX20_04118at 4312.021 kb on + strand, within MPMX20_04118at 4312.095 kb on + strand, within MPMX20_04118at 4312.095 kb on + strand, within MPMX20_04118at 4312.155 kb on + strand, within MPMX20_04118at 4312.161 kb on + strand, within MPMX20_04118at 4312.169 kb on - strand, within MPMX20_04118at 4312.169 kb on - strand, within MPMX20_04118at 4312.210 kb on + strand, within MPMX20_04118at 4312.226 kb on - strand, within MPMX20_04118at 4312.281 kb on + strandat 4312.302 kb on - strandat 4312.332 kb on + strandat 4312.332 kb on + strandat 4312.332 kb on + strandat 4312.340 kb on - strandat 4312.401 kb on - strandat 4312.442 kb on - strandat 4312.444 kb on + strandat 4312.546 kb on + strandat 4312.547 kb on - strandat 4312.547 kb on - strandat 4312.593 kb on - strand, within MPMX20_04119at 4312.630 kb on + strand, within MPMX20_04119at 4312.638 kb on - strand, within MPMX20_04119at 4312.712 kb on + strand, within MPMX20_04119at 4312.735 kb on + strand, within MPMX20_04119at 4312.769 kb on - strand, within MPMX20_04119at 4312.807 kb on + strand, within MPMX20_04119

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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4,310,857 + +0.1
4,310,974 - -1.8
4,311,012 + -0.5
4,311,035 - -1.7
4,311,050 - -1.2
4,311,060 + MPMX20_04118 0.10 -0.1
4,311,073 - MPMX20_04118 0.11 -2.6
4,311,073 - MPMX20_04118 0.11 -1.6
4,311,083 - MPMX20_04118 0.12 +1.7
4,311,102 - MPMX20_04118 0.13 +0.3
4,311,142 - MPMX20_04118 0.16 -1.2
4,311,149 + MPMX20_04118 0.16 -2.6
4,311,157 - MPMX20_04118 0.17 -0.0
4,311,161 - MPMX20_04118 0.17 -2.8
4,311,173 + MPMX20_04118 0.18 -1.7
4,311,196 - MPMX20_04118 0.19 -0.2
4,311,201 + MPMX20_04118 0.20 +0.8
4,311,201 + MPMX20_04118 0.20 -0.8
4,311,257 - MPMX20_04118 0.23 -0.8
4,311,258 + MPMX20_04118 0.24 -0.2
4,311,279 + MPMX20_04118 0.25 +0.5
4,311,327 + MPMX20_04118 0.28 -2.0
4,311,363 + MPMX20_04118 0.30 -1.0
4,311,363 + MPMX20_04118 0.30 -1.1
4,311,363 + MPMX20_04118 0.30 +1.5
4,311,407 + MPMX20_04118 0.33 -1.2
4,311,421 + MPMX20_04118 0.34 +0.5
4,311,421 + MPMX20_04118 0.34 -2.5
4,311,429 - MPMX20_04118 0.35 -2.7
4,311,429 - MPMX20_04118 0.35 -2.8
4,311,458 - MPMX20_04118 0.37 -0.1
4,311,492 - MPMX20_04118 0.39 -1.0
4,311,545 - MPMX20_04118 0.43 -0.1
4,311,660 + MPMX20_04118 0.50 -0.1
4,311,665 + MPMX20_04118 0.50 -0.7
4,311,680 - MPMX20_04118 0.51 -1.2
4,311,705 + MPMX20_04118 0.53 -0.3
4,311,711 + MPMX20_04118 0.54 -0.2
4,311,758 + MPMX20_04118 0.57 -2.0
4,311,796 + MPMX20_04118 0.59 -0.7
4,311,835 - MPMX20_04118 0.62 -2.0
4,311,869 - MPMX20_04118 0.64 -2.5
4,311,876 + MPMX20_04118 0.64 -0.6
4,311,935 + MPMX20_04118 0.68 -1.1
4,311,945 + MPMX20_04118 0.69 -2.8
4,311,951 - MPMX20_04118 0.69 -1.1
4,311,966 - MPMX20_04118 0.70 -1.7
4,311,976 - MPMX20_04118 0.71 -2.7
4,311,985 + MPMX20_04118 0.72 +0.1
4,311,990 + MPMX20_04118 0.72 +1.1
4,311,998 - MPMX20_04118 0.72 -0.6
4,312,010 + MPMX20_04118 0.73 +0.0
4,312,021 + MPMX20_04118 0.74 -2.0
4,312,095 + MPMX20_04118 0.79 -0.6
4,312,095 + MPMX20_04118 0.79 -2.0
4,312,155 + MPMX20_04118 0.83 -0.6
4,312,161 + MPMX20_04118 0.83 +0.8
4,312,169 - MPMX20_04118 0.84 -1.1
4,312,169 - MPMX20_04118 0.84 +0.8
4,312,210 + MPMX20_04118 0.87 +1.3
4,312,226 - MPMX20_04118 0.88 -1.2
4,312,281 + +1.5
4,312,302 - -2.0
4,312,332 + -1.6
4,312,332 + +10.5
4,312,332 + +0.3
4,312,340 - +1.1
4,312,401 - +0.8
4,312,442 - -0.5
4,312,444 + -0.9
4,312,546 + +0.8
4,312,547 - +0.8
4,312,547 - -1.3
4,312,593 - MPMX20_04119 0.15 +1.1
4,312,630 + MPMX20_04119 0.24 +1.1
4,312,638 - MPMX20_04119 0.25 +1.1
4,312,712 + MPMX20_04119 0.42 -0.1
4,312,735 + MPMX20_04119 0.47 -1.2
4,312,769 - MPMX20_04119 0.55 +0.5
4,312,807 + MPMX20_04119 0.64 +2.1

Or see this region's nucleotide sequence