Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04117 and MPMX20_04118 are separated by 266 nucleotides MPMX20_04118 and MPMX20_04119 are separated by 111 nucleotides MPMX20_04119 and MPMX20_04120 overlap by 1 nucleotides
MPMX20_04117: MPMX20_04117 - Lipopolysaccharide export system permease protein LptF, at 4,309,535 to 4,310,635
_04117
MPMX20_04118: MPMX20_04118 - Cytosol aminopeptidase, at 4,310,902 to 4,312,413
_04118
MPMX20_04119: MPMX20_04119 - DNA polymerase III subunit chi, at 4,312,525 to 4,312,968
_04119
MPMX20_04120: MPMX20_04120 - Valine--tRNA ligase, at 4,312,968 to 4,315,823
_04120
Position (kb)
4310
4311
4312
4313 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 4310.857 kb on + strand at 4310.974 kb on - strand at 4311.012 kb on + strand at 4311.035 kb on - strand at 4311.050 kb on - strand at 4311.060 kb on + strand, within MPMX20_04118 at 4311.073 kb on - strand, within MPMX20_04118 at 4311.073 kb on - strand, within MPMX20_04118 at 4311.083 kb on - strand, within MPMX20_04118 at 4311.102 kb on - strand, within MPMX20_04118 at 4311.142 kb on - strand, within MPMX20_04118 at 4311.149 kb on + strand, within MPMX20_04118 at 4311.157 kb on - strand, within MPMX20_04118 at 4311.161 kb on - strand, within MPMX20_04118 at 4311.173 kb on + strand, within MPMX20_04118 at 4311.196 kb on - strand, within MPMX20_04118 at 4311.201 kb on + strand, within MPMX20_04118 at 4311.201 kb on + strand, within MPMX20_04118 at 4311.257 kb on - strand, within MPMX20_04118 at 4311.258 kb on + strand, within MPMX20_04118 at 4311.279 kb on + strand, within MPMX20_04118 at 4311.327 kb on + strand, within MPMX20_04118 at 4311.363 kb on + strand, within MPMX20_04118 at 4311.363 kb on + strand, within MPMX20_04118 at 4311.363 kb on + strand, within MPMX20_04118 at 4311.407 kb on + strand, within MPMX20_04118 at 4311.421 kb on + strand, within MPMX20_04118 at 4311.421 kb on + strand, within MPMX20_04118 at 4311.429 kb on - strand, within MPMX20_04118 at 4311.429 kb on - strand, within MPMX20_04118 at 4311.458 kb on - strand, within MPMX20_04118 at 4311.492 kb on - strand, within MPMX20_04118 at 4311.545 kb on - strand, within MPMX20_04118 at 4311.660 kb on + strand, within MPMX20_04118 at 4311.665 kb on + strand, within MPMX20_04118 at 4311.680 kb on - strand, within MPMX20_04118 at 4311.705 kb on + strand, within MPMX20_04118 at 4311.711 kb on + strand, within MPMX20_04118 at 4311.758 kb on + strand, within MPMX20_04118 at 4311.796 kb on + strand, within MPMX20_04118 at 4311.835 kb on - strand, within MPMX20_04118 at 4311.869 kb on - strand, within MPMX20_04118 at 4311.876 kb on + strand, within MPMX20_04118 at 4311.935 kb on + strand, within MPMX20_04118 at 4311.945 kb on + strand, within MPMX20_04118 at 4311.951 kb on - strand, within MPMX20_04118 at 4311.966 kb on - strand, within MPMX20_04118 at 4311.976 kb on - strand, within MPMX20_04118 at 4311.985 kb on + strand, within MPMX20_04118 at 4311.990 kb on + strand, within MPMX20_04118 at 4311.998 kb on - strand, within MPMX20_04118 at 4312.010 kb on + strand, within MPMX20_04118 at 4312.021 kb on + strand, within MPMX20_04118 at 4312.095 kb on + strand, within MPMX20_04118 at 4312.095 kb on + strand, within MPMX20_04118 at 4312.155 kb on + strand, within MPMX20_04118 at 4312.161 kb on + strand, within MPMX20_04118 at 4312.169 kb on - strand, within MPMX20_04118 at 4312.169 kb on - strand, within MPMX20_04118 at 4312.210 kb on + strand, within MPMX20_04118 at 4312.226 kb on - strand, within MPMX20_04118 at 4312.281 kb on + strand at 4312.302 kb on - strand at 4312.332 kb on + strand at 4312.332 kb on + strand at 4312.332 kb on + strand at 4312.340 kb on - strand at 4312.401 kb on - strand at 4312.442 kb on - strand at 4312.444 kb on + strand at 4312.546 kb on + strand at 4312.547 kb on - strand at 4312.547 kb on - strand at 4312.593 kb on - strand, within MPMX20_04119 at 4312.630 kb on + strand, within MPMX20_04119 at 4312.638 kb on - strand, within MPMX20_04119 at 4312.712 kb on + strand, within MPMX20_04119 at 4312.735 kb on + strand, within MPMX20_04119 at 4312.769 kb on - strand, within MPMX20_04119 at 4312.807 kb on + strand, within MPMX20_04119
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 4,310,857 + +0.1 4,310,974 - -1.8 4,311,012 + -0.5 4,311,035 - -1.7 4,311,050 - -1.2 4,311,060 + MPMX20_04118 0.10 -0.1 4,311,073 - MPMX20_04118 0.11 -2.6 4,311,073 - MPMX20_04118 0.11 -1.6 4,311,083 - MPMX20_04118 0.12 +1.7 4,311,102 - MPMX20_04118 0.13 +0.3 4,311,142 - MPMX20_04118 0.16 -1.2 4,311,149 + MPMX20_04118 0.16 -2.6 4,311,157 - MPMX20_04118 0.17 -0.0 4,311,161 - MPMX20_04118 0.17 -2.8 4,311,173 + MPMX20_04118 0.18 -1.7 4,311,196 - MPMX20_04118 0.19 -0.2 4,311,201 + MPMX20_04118 0.20 +0.8 4,311,201 + MPMX20_04118 0.20 -0.8 4,311,257 - MPMX20_04118 0.23 -0.8 4,311,258 + MPMX20_04118 0.24 -0.2 4,311,279 + MPMX20_04118 0.25 +0.5 4,311,327 + MPMX20_04118 0.28 -2.0 4,311,363 + MPMX20_04118 0.30 -1.0 4,311,363 + MPMX20_04118 0.30 -1.1 4,311,363 + MPMX20_04118 0.30 +1.5 4,311,407 + MPMX20_04118 0.33 -1.2 4,311,421 + MPMX20_04118 0.34 +0.5 4,311,421 + MPMX20_04118 0.34 -2.5 4,311,429 - MPMX20_04118 0.35 -2.7 4,311,429 - MPMX20_04118 0.35 -2.8 4,311,458 - MPMX20_04118 0.37 -0.1 4,311,492 - MPMX20_04118 0.39 -1.0 4,311,545 - MPMX20_04118 0.43 -0.1 4,311,660 + MPMX20_04118 0.50 -0.1 4,311,665 + MPMX20_04118 0.50 -0.7 4,311,680 - MPMX20_04118 0.51 -1.2 4,311,705 + MPMX20_04118 0.53 -0.3 4,311,711 + MPMX20_04118 0.54 -0.2 4,311,758 + MPMX20_04118 0.57 -2.0 4,311,796 + MPMX20_04118 0.59 -0.7 4,311,835 - MPMX20_04118 0.62 -2.0 4,311,869 - MPMX20_04118 0.64 -2.5 4,311,876 + MPMX20_04118 0.64 -0.6 4,311,935 + MPMX20_04118 0.68 -1.1 4,311,945 + MPMX20_04118 0.69 -2.8 4,311,951 - MPMX20_04118 0.69 -1.1 4,311,966 - MPMX20_04118 0.70 -1.7 4,311,976 - MPMX20_04118 0.71 -2.7 4,311,985 + MPMX20_04118 0.72 +0.1 4,311,990 + MPMX20_04118 0.72 +1.1 4,311,998 - MPMX20_04118 0.72 -0.6 4,312,010 + MPMX20_04118 0.73 +0.0 4,312,021 + MPMX20_04118 0.74 -2.0 4,312,095 + MPMX20_04118 0.79 -0.6 4,312,095 + MPMX20_04118 0.79 -2.0 4,312,155 + MPMX20_04118 0.83 -0.6 4,312,161 + MPMX20_04118 0.83 +0.8 4,312,169 - MPMX20_04118 0.84 -1.1 4,312,169 - MPMX20_04118 0.84 +0.8 4,312,210 + MPMX20_04118 0.87 +1.3 4,312,226 - MPMX20_04118 0.88 -1.2 4,312,281 + +1.5 4,312,302 - -2.0 4,312,332 + -1.6 4,312,332 + +10.5 4,312,332 + +0.3 4,312,340 - +1.1 4,312,401 - +0.8 4,312,442 - -0.5 4,312,444 + -0.9 4,312,546 + +0.8 4,312,547 - +0.8 4,312,547 - -1.3 4,312,593 - MPMX20_04119 0.15 +1.1 4,312,630 + MPMX20_04119 0.24 +1.1 4,312,638 - MPMX20_04119 0.25 +1.1 4,312,712 + MPMX20_04119 0.42 -0.1 4,312,735 + MPMX20_04119 0.47 -1.2 4,312,769 - MPMX20_04119 0.55 +0.5 4,312,807 + MPMX20_04119 0.64 +2.1
Or see this region's nucleotide sequence