Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03737 and MPMX20_03738 are separated by 169 nucleotides MPMX20_03738 and MPMX20_03739 are separated by 14 nucleotides
MPMX20_03737: MPMX20_03737 - Lichenan permease IIC component, at 3,940,924 to 3,942,195
_03737
MPMX20_03738: MPMX20_03738 - PTS system oligo-beta-mannoside-specific EIIB component, at 3,942,365 to 3,942,676
_03738
MPMX20_03739: MPMX20_03739 - Lichenan permease IIC component, at 3,942,691 to 3,944,013
_03739
Position (kb)
3942
3943 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3941.482 kb on - strand, within MPMX20_03737 at 3941.517 kb on - strand, within MPMX20_03737 at 3941.689 kb on - strand, within MPMX20_03737 at 3941.778 kb on + strand, within MPMX20_03737 at 3941.786 kb on - strand, within MPMX20_03737 at 3941.861 kb on + strand, within MPMX20_03737 at 3941.888 kb on + strand, within MPMX20_03737 at 3941.937 kb on + strand, within MPMX20_03737 at 3941.965 kb on - strand, within MPMX20_03737 at 3942.156 kb on - strand at 3942.158 kb on + strand at 3942.203 kb on + strand at 3942.239 kb on + strand at 3942.239 kb on + strand at 3942.239 kb on + strand at 3942.247 kb on - strand at 3942.344 kb on - strand at 3942.349 kb on + strand at 3942.382 kb on + strand at 3942.471 kb on + strand, within MPMX20_03738 at 3942.489 kb on - strand, within MPMX20_03738 at 3942.507 kb on - strand, within MPMX20_03738 at 3942.516 kb on - strand, within MPMX20_03738 at 3942.516 kb on - strand, within MPMX20_03738 at 3942.528 kb on + strand, within MPMX20_03738 at 3942.531 kb on - strand, within MPMX20_03738 at 3942.535 kb on + strand, within MPMX20_03738 at 3942.655 kb on + strand at 3942.655 kb on + strand at 3942.665 kb on - strand at 3942.688 kb on + strand at 3942.688 kb on + strand at 3942.696 kb on - strand at 3942.696 kb on - strand at 3942.765 kb on + strand at 3942.771 kb on - strand at 3942.830 kb on + strand, within MPMX20_03739 at 3942.838 kb on - strand, within MPMX20_03739 at 3942.872 kb on + strand, within MPMX20_03739 at 3942.880 kb on - strand, within MPMX20_03739 at 3942.881 kb on - strand, within MPMX20_03739 at 3942.881 kb on - strand, within MPMX20_03739 at 3942.881 kb on - strand, within MPMX20_03739 at 3942.908 kb on + strand, within MPMX20_03739 at 3942.933 kb on - strand, within MPMX20_03739 at 3942.998 kb on + strand, within MPMX20_03739 at 3943.062 kb on + strand, within MPMX20_03739 at 3943.097 kb on - strand, within MPMX20_03739 at 3943.141 kb on + strand, within MPMX20_03739 at 3943.151 kb on + strand, within MPMX20_03739 at 3943.154 kb on - strand, within MPMX20_03739 at 3943.158 kb on + strand, within MPMX20_03739 at 3943.166 kb on - strand, within MPMX20_03739 at 3943.279 kb on - strand, within MPMX20_03739 at 3943.288 kb on - strand, within MPMX20_03739 at 3943.364 kb on + strand, within MPMX20_03739 at 3943.401 kb on - strand, within MPMX20_03739 at 3943.408 kb on + strand, within MPMX20_03739 at 3943.408 kb on + strand, within MPMX20_03739 at 3943.472 kb on - strand, within MPMX20_03739 at 3943.479 kb on + strand, within MPMX20_03739 at 3943.527 kb on + strand, within MPMX20_03739 at 3943.577 kb on + strand, within MPMX20_03739 at 3943.585 kb on - strand, within MPMX20_03739 at 3943.649 kb on - strand, within MPMX20_03739
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 3,941,482 - MPMX20_03737 0.44 +3.4 3,941,517 - MPMX20_03737 0.47 -1.2 3,941,689 - MPMX20_03737 0.60 -1.9 3,941,778 + MPMX20_03737 0.67 -0.9 3,941,786 - MPMX20_03737 0.68 +0.8 3,941,861 + MPMX20_03737 0.74 +0.9 3,941,888 + MPMX20_03737 0.76 +0.3 3,941,937 + MPMX20_03737 0.80 -0.8 3,941,965 - MPMX20_03737 0.82 -0.3 3,942,156 - +1.6 3,942,158 + -2.5 3,942,203 + +1.2 3,942,239 + -0.0 3,942,239 + +0.0 3,942,239 + +0.2 3,942,247 - -0.8 3,942,344 - -2.3 3,942,349 + -0.3 3,942,382 + -0.3 3,942,471 + MPMX20_03738 0.34 -2.2 3,942,489 - MPMX20_03738 0.40 +2.3 3,942,507 - MPMX20_03738 0.46 +3.0 3,942,516 - MPMX20_03738 0.48 +0.3 3,942,516 - MPMX20_03738 0.48 -0.3 3,942,528 + MPMX20_03738 0.52 -0.3 3,942,531 - MPMX20_03738 0.53 -0.1 3,942,535 + MPMX20_03738 0.54 -0.2 3,942,655 + -0.9 3,942,655 + +0.3 3,942,665 - +1.2 3,942,688 + -0.3 3,942,688 + -2.1 3,942,696 - -0.4 3,942,696 - +0.2 3,942,765 + -1.3 3,942,771 - +1.3 3,942,830 + MPMX20_03739 0.11 -0.8 3,942,838 - MPMX20_03739 0.11 -0.2 3,942,872 + MPMX20_03739 0.14 +0.3 3,942,880 - MPMX20_03739 0.14 +0.2 3,942,881 - MPMX20_03739 0.14 -0.1 3,942,881 - MPMX20_03739 0.14 +0.3 3,942,881 - MPMX20_03739 0.14 -1.7 3,942,908 + MPMX20_03739 0.16 -1.3 3,942,933 - MPMX20_03739 0.18 -2.9 3,942,998 + MPMX20_03739 0.23 -0.1 3,943,062 + MPMX20_03739 0.28 -1.1 3,943,097 - MPMX20_03739 0.31 +0.7 3,943,141 + MPMX20_03739 0.34 +2.7 3,943,151 + MPMX20_03739 0.35 +0.2 3,943,154 - MPMX20_03739 0.35 +0.8 3,943,158 + MPMX20_03739 0.35 +0.4 3,943,166 - MPMX20_03739 0.36 +0.3 3,943,279 - MPMX20_03739 0.44 +0.3 3,943,288 - MPMX20_03739 0.45 +0.2 3,943,364 + MPMX20_03739 0.51 -1.4 3,943,401 - MPMX20_03739 0.54 -1.0 3,943,408 + MPMX20_03739 0.54 -1.6 3,943,408 + MPMX20_03739 0.54 +0.0 3,943,472 - MPMX20_03739 0.59 -0.8 3,943,479 + MPMX20_03739 0.60 +0.2 3,943,527 + MPMX20_03739 0.63 -1.6 3,943,577 + MPMX20_03739 0.67 +1.6 3,943,585 - MPMX20_03739 0.68 +0.5 3,943,649 - MPMX20_03739 0.72 -2.2
Or see this region's nucleotide sequence