Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03738

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03737 and MPMX20_03738 are separated by 169 nucleotidesMPMX20_03738 and MPMX20_03739 are separated by 14 nucleotides MPMX20_03737: MPMX20_03737 - Lichenan permease IIC component, at 3,940,924 to 3,942,195 _03737 MPMX20_03738: MPMX20_03738 - PTS system oligo-beta-mannoside-specific EIIB component, at 3,942,365 to 3,942,676 _03738 MPMX20_03739: MPMX20_03739 - Lichenan permease IIC component, at 3,942,691 to 3,944,013 _03739 Position (kb) 3942 3943Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3941.482 kb on - strand, within MPMX20_03737at 3941.517 kb on - strand, within MPMX20_03737at 3941.689 kb on - strand, within MPMX20_03737at 3941.778 kb on + strand, within MPMX20_03737at 3941.786 kb on - strand, within MPMX20_03737at 3941.861 kb on + strand, within MPMX20_03737at 3941.888 kb on + strand, within MPMX20_03737at 3941.937 kb on + strand, within MPMX20_03737at 3941.965 kb on - strand, within MPMX20_03737at 3942.156 kb on - strandat 3942.158 kb on + strandat 3942.203 kb on + strandat 3942.239 kb on + strandat 3942.239 kb on + strandat 3942.239 kb on + strandat 3942.247 kb on - strandat 3942.344 kb on - strandat 3942.349 kb on + strandat 3942.382 kb on + strandat 3942.471 kb on + strand, within MPMX20_03738at 3942.489 kb on - strand, within MPMX20_03738at 3942.507 kb on - strand, within MPMX20_03738at 3942.516 kb on - strand, within MPMX20_03738at 3942.516 kb on - strand, within MPMX20_03738at 3942.528 kb on + strand, within MPMX20_03738at 3942.531 kb on - strand, within MPMX20_03738at 3942.535 kb on + strand, within MPMX20_03738at 3942.655 kb on + strandat 3942.655 kb on + strandat 3942.665 kb on - strandat 3942.688 kb on + strandat 3942.688 kb on + strandat 3942.696 kb on - strandat 3942.696 kb on - strandat 3942.765 kb on + strandat 3942.771 kb on - strandat 3942.830 kb on + strand, within MPMX20_03739at 3942.838 kb on - strand, within MPMX20_03739at 3942.872 kb on + strand, within MPMX20_03739at 3942.880 kb on - strand, within MPMX20_03739at 3942.881 kb on - strand, within MPMX20_03739at 3942.881 kb on - strand, within MPMX20_03739at 3942.881 kb on - strand, within MPMX20_03739at 3942.908 kb on + strand, within MPMX20_03739at 3942.933 kb on - strand, within MPMX20_03739at 3942.998 kb on + strand, within MPMX20_03739at 3943.062 kb on + strand, within MPMX20_03739at 3943.097 kb on - strand, within MPMX20_03739at 3943.141 kb on + strand, within MPMX20_03739at 3943.151 kb on + strand, within MPMX20_03739at 3943.154 kb on - strand, within MPMX20_03739at 3943.158 kb on + strand, within MPMX20_03739at 3943.166 kb on - strand, within MPMX20_03739at 3943.279 kb on - strand, within MPMX20_03739at 3943.288 kb on - strand, within MPMX20_03739at 3943.364 kb on + strand, within MPMX20_03739at 3943.401 kb on - strand, within MPMX20_03739at 3943.408 kb on + strand, within MPMX20_03739at 3943.408 kb on + strand, within MPMX20_03739at 3943.472 kb on - strand, within MPMX20_03739at 3943.479 kb on + strand, within MPMX20_03739at 3943.527 kb on + strand, within MPMX20_03739at 3943.577 kb on + strand, within MPMX20_03739at 3943.585 kb on - strand, within MPMX20_03739at 3943.649 kb on - strand, within MPMX20_03739

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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3,941,482 - MPMX20_03737 0.44 +3.4
3,941,517 - MPMX20_03737 0.47 -1.2
3,941,689 - MPMX20_03737 0.60 -1.9
3,941,778 + MPMX20_03737 0.67 -0.9
3,941,786 - MPMX20_03737 0.68 +0.8
3,941,861 + MPMX20_03737 0.74 +0.9
3,941,888 + MPMX20_03737 0.76 +0.3
3,941,937 + MPMX20_03737 0.80 -0.8
3,941,965 - MPMX20_03737 0.82 -0.3
3,942,156 - +1.6
3,942,158 + -2.5
3,942,203 + +1.2
3,942,239 + -0.0
3,942,239 + +0.0
3,942,239 + +0.2
3,942,247 - -0.8
3,942,344 - -2.3
3,942,349 + -0.3
3,942,382 + -0.3
3,942,471 + MPMX20_03738 0.34 -2.2
3,942,489 - MPMX20_03738 0.40 +2.3
3,942,507 - MPMX20_03738 0.46 +3.0
3,942,516 - MPMX20_03738 0.48 +0.3
3,942,516 - MPMX20_03738 0.48 -0.3
3,942,528 + MPMX20_03738 0.52 -0.3
3,942,531 - MPMX20_03738 0.53 -0.1
3,942,535 + MPMX20_03738 0.54 -0.2
3,942,655 + -0.9
3,942,655 + +0.3
3,942,665 - +1.2
3,942,688 + -0.3
3,942,688 + -2.1
3,942,696 - -0.4
3,942,696 - +0.2
3,942,765 + -1.3
3,942,771 - +1.3
3,942,830 + MPMX20_03739 0.11 -0.8
3,942,838 - MPMX20_03739 0.11 -0.2
3,942,872 + MPMX20_03739 0.14 +0.3
3,942,880 - MPMX20_03739 0.14 +0.2
3,942,881 - MPMX20_03739 0.14 -0.1
3,942,881 - MPMX20_03739 0.14 +0.3
3,942,881 - MPMX20_03739 0.14 -1.7
3,942,908 + MPMX20_03739 0.16 -1.3
3,942,933 - MPMX20_03739 0.18 -2.9
3,942,998 + MPMX20_03739 0.23 -0.1
3,943,062 + MPMX20_03739 0.28 -1.1
3,943,097 - MPMX20_03739 0.31 +0.7
3,943,141 + MPMX20_03739 0.34 +2.7
3,943,151 + MPMX20_03739 0.35 +0.2
3,943,154 - MPMX20_03739 0.35 +0.8
3,943,158 + MPMX20_03739 0.35 +0.4
3,943,166 - MPMX20_03739 0.36 +0.3
3,943,279 - MPMX20_03739 0.44 +0.3
3,943,288 - MPMX20_03739 0.45 +0.2
3,943,364 + MPMX20_03739 0.51 -1.4
3,943,401 - MPMX20_03739 0.54 -1.0
3,943,408 + MPMX20_03739 0.54 -1.6
3,943,408 + MPMX20_03739 0.54 +0.0
3,943,472 - MPMX20_03739 0.59 -0.8
3,943,479 + MPMX20_03739 0.60 +0.2
3,943,527 + MPMX20_03739 0.63 -1.6
3,943,577 + MPMX20_03739 0.67 +1.6
3,943,585 - MPMX20_03739 0.68 +0.5
3,943,649 - MPMX20_03739 0.72 -2.2

Or see this region's nucleotide sequence