Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03637

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03635 and MPMX20_03636 are separated by 58 nucleotidesMPMX20_03636 and MPMX20_03637 overlap by 1 nucleotidesMPMX20_03637 and MPMX20_03638 are separated by 9 nucleotidesMPMX20_03638 and MPMX20_03639 are separated by 9 nucleotides MPMX20_03635: MPMX20_03635 - Inner membrane protein YgbE, at 3,822,700 to 3,823,026 _03635 MPMX20_03636: MPMX20_03636 - Adenylyl-sulfate kinase, at 3,823,085 to 3,823,690 _03636 MPMX20_03637: MPMX20_03637 - Sulfate adenylyltransferase subunit 1, at 3,823,690 to 3,825,114 _03637 MPMX20_03638: MPMX20_03638 - Sulfate adenylyltransferase subunit 2, at 3,825,124 to 3,826,032 _03638 MPMX20_03639: MPMX20_03639 - Siroheme synthase, at 3,826,042 to 3,827,400 _03639 Position (kb) 3823 3824 3825 3826Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3822.733 kb on + strand, within MPMX20_03635at 3822.801 kb on + strand, within MPMX20_03635at 3822.801 kb on + strand, within MPMX20_03635at 3822.801 kb on + strand, within MPMX20_03635at 3822.804 kb on - strand, within MPMX20_03635at 3822.814 kb on - strand, within MPMX20_03635at 3822.861 kb on - strand, within MPMX20_03635at 3822.871 kb on - strand, within MPMX20_03635at 3822.873 kb on + strand, within MPMX20_03635at 3822.873 kb on + strand, within MPMX20_03635at 3822.992 kb on - strand, within MPMX20_03635at 3823.018 kb on + strandat 3823.018 kb on + strandat 3823.062 kb on + strandat 3823.084 kb on + strandat 3823.107 kb on + strandat 3823.112 kb on + strandat 3823.204 kb on - strand, within MPMX20_03636at 3823.420 kb on + strand, within MPMX20_03636at 3823.428 kb on - strand, within MPMX20_03636at 3823.483 kb on - strand, within MPMX20_03636at 3823.510 kb on + strand, within MPMX20_03636at 3823.522 kb on + strand, within MPMX20_03636at 3823.560 kb on + strand, within MPMX20_03636at 3823.565 kb on + strand, within MPMX20_03636at 3823.575 kb on + strand, within MPMX20_03636at 3823.583 kb on - strand, within MPMX20_03636at 3823.588 kb on + strand, within MPMX20_03636at 3823.603 kb on - strand, within MPMX20_03636at 3823.644 kb on - strandat 3823.644 kb on - strandat 3823.644 kb on - strandat 3823.670 kb on + strandat 3823.705 kb on - strandat 3823.784 kb on - strandat 3823.787 kb on + strandat 3823.787 kb on + strandat 3823.787 kb on + strandat 3823.808 kb on - strandat 3823.838 kb on - strand, within MPMX20_03637at 3823.940 kb on - strand, within MPMX20_03637at 3823.940 kb on - strand, within MPMX20_03637at 3823.979 kb on - strand, within MPMX20_03637at 3823.992 kb on + strand, within MPMX20_03637at 3823.999 kb on - strand, within MPMX20_03637at 3824.010 kb on - strand, within MPMX20_03637at 3824.061 kb on - strand, within MPMX20_03637at 3824.061 kb on - strand, within MPMX20_03637at 3824.115 kb on - strand, within MPMX20_03637at 3824.115 kb on - strand, within MPMX20_03637at 3824.194 kb on + strand, within MPMX20_03637at 3824.277 kb on - strand, within MPMX20_03637at 3824.394 kb on - strand, within MPMX20_03637at 3824.431 kb on - strand, within MPMX20_03637at 3824.441 kb on - strand, within MPMX20_03637at 3824.441 kb on - strand, within MPMX20_03637at 3824.631 kb on - strand, within MPMX20_03637at 3824.670 kb on - strand, within MPMX20_03637at 3824.753 kb on - strand, within MPMX20_03637at 3824.760 kb on + strand, within MPMX20_03637at 3824.797 kb on + strand, within MPMX20_03637at 3824.920 kb on - strand, within MPMX20_03637at 3824.933 kb on + strand, within MPMX20_03637at 3824.941 kb on - strand, within MPMX20_03637at 3825.014 kb on + strandat 3825.014 kb on + strandat 3825.027 kb on - strandat 3825.027 kb on - strandat 3825.161 kb on - strandat 3825.258 kb on + strand, within MPMX20_03638at 3825.266 kb on - strand, within MPMX20_03638at 3825.276 kb on - strand, within MPMX20_03638at 3825.295 kb on + strand, within MPMX20_03638at 3825.379 kb on + strand, within MPMX20_03638at 3825.387 kb on - strand, within MPMX20_03638at 3825.387 kb on - strand, within MPMX20_03638at 3825.387 kb on - strand, within MPMX20_03638at 3825.387 kb on - strand, within MPMX20_03638at 3825.534 kb on + strand, within MPMX20_03638at 3825.542 kb on - strand, within MPMX20_03638at 3825.592 kb on - strand, within MPMX20_03638at 3825.642 kb on - strand, within MPMX20_03638at 3825.642 kb on - strand, within MPMX20_03638at 3825.642 kb on - strand, within MPMX20_03638at 3825.642 kb on - strand, within MPMX20_03638at 3825.673 kb on + strand, within MPMX20_03638at 3825.686 kb on - strand, within MPMX20_03638at 3825.686 kb on - strand, within MPMX20_03638at 3825.715 kb on + strand, within MPMX20_03638at 3825.715 kb on + strand, within MPMX20_03638at 3825.729 kb on + strand, within MPMX20_03638at 3825.729 kb on + strand, within MPMX20_03638at 3825.737 kb on - strand, within MPMX20_03638at 3825.737 kb on - strand, within MPMX20_03638at 3825.741 kb on + strand, within MPMX20_03638at 3825.741 kb on + strand, within MPMX20_03638at 3825.741 kb on + strand, within MPMX20_03638at 3825.781 kb on + strand, within MPMX20_03638at 3825.789 kb on - strand, within MPMX20_03638at 3825.847 kb on - strand, within MPMX20_03638at 3825.898 kb on + strand, within MPMX20_03638at 3825.898 kb on + strand, within MPMX20_03638at 3825.898 kb on + strand, within MPMX20_03638at 3825.909 kb on + strand, within MPMX20_03638at 3826.003 kb on + strandat 3826.065 kb on + strandat 3826.066 kb on + strandat 3826.082 kb on - strandat 3826.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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3,822,733 + MPMX20_03635 0.10 -0.2
3,822,801 + MPMX20_03635 0.31 -0.7
3,822,801 + MPMX20_03635 0.31 -2.6
3,822,801 + MPMX20_03635 0.31 -0.2
3,822,804 - MPMX20_03635 0.32 -2.5
3,822,814 - MPMX20_03635 0.35 +0.8
3,822,861 - MPMX20_03635 0.49 -1.3
3,822,871 - MPMX20_03635 0.52 +1.1
3,822,873 + MPMX20_03635 0.53 +0.6
3,822,873 + MPMX20_03635 0.53 +0.6
3,822,992 - MPMX20_03635 0.89 +1.3
3,823,018 + -1.6
3,823,018 + +0.3
3,823,062 + +5.4
3,823,084 + +0.4
3,823,107 + -0.0
3,823,112 + +0.6
3,823,204 - MPMX20_03636 0.20 -1.8
3,823,420 + MPMX20_03636 0.55 -0.2
3,823,428 - MPMX20_03636 0.57 -1.3
3,823,483 - MPMX20_03636 0.66 -0.6
3,823,510 + MPMX20_03636 0.70 -0.9
3,823,522 + MPMX20_03636 0.72 -0.9
3,823,560 + MPMX20_03636 0.78 -1.4
3,823,565 + MPMX20_03636 0.79 -1.9
3,823,575 + MPMX20_03636 0.81 +1.1
3,823,583 - MPMX20_03636 0.82 +0.1
3,823,588 + MPMX20_03636 0.83 -2.6
3,823,603 - MPMX20_03636 0.85 -2.3
3,823,644 - +3.9
3,823,644 - -0.2
3,823,644 - -0.6
3,823,670 + -1.1
3,823,705 - +0.3
3,823,784 - +0.6
3,823,787 + +0.1
3,823,787 + -1.7
3,823,787 + -1.3
3,823,808 - -1.0
3,823,838 - MPMX20_03637 0.10 +1.3
3,823,940 - MPMX20_03637 0.18 +1.1
3,823,940 - MPMX20_03637 0.18 +2.1
3,823,979 - MPMX20_03637 0.20 -1.8
3,823,992 + MPMX20_03637 0.21 +1.3
3,823,999 - MPMX20_03637 0.22 +2.6
3,824,010 - MPMX20_03637 0.22 +1.5
3,824,061 - MPMX20_03637 0.26 +0.8
3,824,061 - MPMX20_03637 0.26 -0.0
3,824,115 - MPMX20_03637 0.30 +1.1
3,824,115 - MPMX20_03637 0.30 +0.6
3,824,194 + MPMX20_03637 0.35 -1.7
3,824,277 - MPMX20_03637 0.41 -0.4
3,824,394 - MPMX20_03637 0.49 +3.1
3,824,431 - MPMX20_03637 0.52 -1.7
3,824,441 - MPMX20_03637 0.53 +2.1
3,824,441 - MPMX20_03637 0.53 +0.7
3,824,631 - MPMX20_03637 0.66 +0.6
3,824,670 - MPMX20_03637 0.69 +1.8
3,824,753 - MPMX20_03637 0.75 +0.3
3,824,760 + MPMX20_03637 0.75 +0.4
3,824,797 + MPMX20_03637 0.78 +1.7
3,824,920 - MPMX20_03637 0.86 +0.8
3,824,933 + MPMX20_03637 0.87 +1.1
3,824,941 - MPMX20_03637 0.88 +1.0
3,825,014 + -0.2
3,825,014 + +0.3
3,825,027 - -1.1
3,825,027 - -1.7
3,825,161 - +2.1
3,825,258 + MPMX20_03638 0.15 -1.2
3,825,266 - MPMX20_03638 0.16 -1.4
3,825,276 - MPMX20_03638 0.17 +0.7
3,825,295 + MPMX20_03638 0.19 -0.2
3,825,379 + MPMX20_03638 0.28 -0.3
3,825,387 - MPMX20_03638 0.29 -0.7
3,825,387 - MPMX20_03638 0.29 +0.5
3,825,387 - MPMX20_03638 0.29 -0.3
3,825,387 - MPMX20_03638 0.29 -0.2
3,825,534 + MPMX20_03638 0.45 -0.3
3,825,542 - MPMX20_03638 0.46 -0.3
3,825,592 - MPMX20_03638 0.51 -0.0
3,825,642 - MPMX20_03638 0.57 +0.8
3,825,642 - MPMX20_03638 0.57 -2.0
3,825,642 - MPMX20_03638 0.57 -0.6
3,825,642 - MPMX20_03638 0.57 +0.4
3,825,673 + MPMX20_03638 0.60 -1.3
3,825,686 - MPMX20_03638 0.62 +0.7
3,825,686 - MPMX20_03638 0.62 -0.7
3,825,715 + MPMX20_03638 0.65 +0.2
3,825,715 + MPMX20_03638 0.65 +1.3
3,825,729 + MPMX20_03638 0.67 +0.5
3,825,729 + MPMX20_03638 0.67 -0.4
3,825,737 - MPMX20_03638 0.67 -0.3
3,825,737 - MPMX20_03638 0.67 -0.0
3,825,741 + MPMX20_03638 0.68 +1.1
3,825,741 + MPMX20_03638 0.68 -0.2
3,825,741 + MPMX20_03638 0.68 -0.8
3,825,781 + MPMX20_03638 0.72 -1.2
3,825,789 - MPMX20_03638 0.73 -1.9
3,825,847 - MPMX20_03638 0.80 -0.6
3,825,898 + MPMX20_03638 0.85 -1.5
3,825,898 + MPMX20_03638 0.85 -0.9
3,825,898 + MPMX20_03638 0.85 +1.1
3,825,909 + MPMX20_03638 0.86 -0.4
3,826,003 + -0.3
3,826,065 + +0.0
3,826,066 + +1.1
3,826,082 - -0.3
3,826,085 + +0.1

Or see this region's nucleotide sequence