Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03617

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03616 and MPMX20_03617 are separated by 66 nucleotidesMPMX20_03617 and MPMX20_03618 are separated by 174 nucleotidesMPMX20_03618 and MPMX20_03619 are separated by 113 nucleotides MPMX20_03616: MPMX20_03616 - Formate hydrogenlyase transcriptional activator, at 3,805,179 to 3,807,251 _03616 MPMX20_03617: MPMX20_03617 - hypothetical protein, at 3,807,318 to 3,807,662 _03617 MPMX20_03618: MPMX20_03618 - Endoribonuclease SymE, at 3,807,837 to 3,808,067 _03618 MPMX20_03619: MPMX20_03619 - DNA mismatch repair protein MutS, at 3,808,181 to 3,810,742 _03619 Position (kb) 3807 3808Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3806.337 kb on + strand, within MPMX20_03616at 3806.337 kb on + strand, within MPMX20_03616at 3806.337 kb on + strand, within MPMX20_03616at 3806.345 kb on - strand, within MPMX20_03616at 3806.345 kb on - strand, within MPMX20_03616at 3806.345 kb on - strand, within MPMX20_03616at 3806.368 kb on - strand, within MPMX20_03616at 3806.368 kb on - strand, within MPMX20_03616at 3806.391 kb on + strand, within MPMX20_03616at 3806.391 kb on + strand, within MPMX20_03616at 3806.394 kb on - strand, within MPMX20_03616at 3806.399 kb on - strand, within MPMX20_03616at 3806.467 kb on - strand, within MPMX20_03616at 3806.499 kb on - strand, within MPMX20_03616at 3806.513 kb on + strand, within MPMX20_03616at 3806.571 kb on + strand, within MPMX20_03616at 3806.579 kb on - strand, within MPMX20_03616at 3806.579 kb on - strand, within MPMX20_03616at 3806.635 kb on + strand, within MPMX20_03616at 3806.648 kb on + strand, within MPMX20_03616at 3806.841 kb on - strand, within MPMX20_03616at 3806.855 kb on - strand, within MPMX20_03616at 3806.953 kb on - strand, within MPMX20_03616at 3807.076 kb on - strandat 3807.137 kb on + strandat 3807.145 kb on - strandat 3807.155 kb on - strandat 3807.239 kb on - strandat 3807.239 kb on - strandat 3807.249 kb on - strandat 3807.249 kb on - strandat 3807.251 kb on + strandat 3807.419 kb on + strand, within MPMX20_03617at 3807.427 kb on - strand, within MPMX20_03617at 3807.427 kb on - strand, within MPMX20_03617at 3807.488 kb on + strand, within MPMX20_03617at 3807.606 kb on - strand, within MPMX20_03617at 3807.606 kb on - strand, within MPMX20_03617at 3807.606 kb on - strand, within MPMX20_03617at 3807.610 kb on - strand, within MPMX20_03617at 3807.728 kb on + strandat 3807.762 kb on - strandat 3807.762 kb on - strandat 3807.908 kb on + strand, within MPMX20_03618at 3807.932 kb on - strand, within MPMX20_03618at 3807.948 kb on + strand, within MPMX20_03618at 3808.002 kb on - strand, within MPMX20_03618at 3808.004 kb on + strand, within MPMX20_03618at 3808.004 kb on + strand, within MPMX20_03618at 3808.012 kb on - strand, within MPMX20_03618at 3808.012 kb on - strand, within MPMX20_03618at 3808.117 kb on - strandat 3808.220 kb on + strandat 3808.238 kb on - strandat 3808.317 kb on - strandat 3808.330 kb on + strandat 3808.438 kb on + strand, within MPMX20_03619at 3808.482 kb on + strand, within MPMX20_03619at 3808.499 kb on - strand, within MPMX20_03619at 3808.516 kb on - strand, within MPMX20_03619at 3808.553 kb on - strand, within MPMX20_03619at 3808.574 kb on - strand, within MPMX20_03619at 3808.604 kb on + strand, within MPMX20_03619at 3808.612 kb on - strand, within MPMX20_03619at 3808.630 kb on - strand, within MPMX20_03619

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
remove
3,806,337 + MPMX20_03616 0.56 -0.6
3,806,337 + MPMX20_03616 0.56 -0.1
3,806,337 + MPMX20_03616 0.56 +3.1
3,806,345 - MPMX20_03616 0.56 -0.7
3,806,345 - MPMX20_03616 0.56 +0.6
3,806,345 - MPMX20_03616 0.56 +2.4
3,806,368 - MPMX20_03616 0.57 -1.6
3,806,368 - MPMX20_03616 0.57 +0.3
3,806,391 + MPMX20_03616 0.58 +1.6
3,806,391 + MPMX20_03616 0.58 +0.6
3,806,394 - MPMX20_03616 0.59 -2.6
3,806,399 - MPMX20_03616 0.59 +0.3
3,806,467 - MPMX20_03616 0.62 -0.3
3,806,499 - MPMX20_03616 0.64 -0.2
3,806,513 + MPMX20_03616 0.64 -0.0
3,806,571 + MPMX20_03616 0.67 +0.6
3,806,579 - MPMX20_03616 0.68 -0.0
3,806,579 - MPMX20_03616 0.68 -1.4
3,806,635 + MPMX20_03616 0.70 -0.2
3,806,648 + MPMX20_03616 0.71 -0.5
3,806,841 - MPMX20_03616 0.80 -1.3
3,806,855 - MPMX20_03616 0.81 -1.4
3,806,953 - MPMX20_03616 0.86 +1.1
3,807,076 - +0.3
3,807,137 + -0.6
3,807,145 - -0.6
3,807,155 - +1.0
3,807,239 - +1.3
3,807,239 - +3.1
3,807,249 - -1.1
3,807,249 - -0.9
3,807,251 + -0.8
3,807,419 + MPMX20_03617 0.29 -2.9
3,807,427 - MPMX20_03617 0.32 -1.4
3,807,427 - MPMX20_03617 0.32 -1.1
3,807,488 + MPMX20_03617 0.49 +0.5
3,807,606 - MPMX20_03617 0.83 -0.8
3,807,606 - MPMX20_03617 0.83 +1.1
3,807,606 - MPMX20_03617 0.83 -0.7
3,807,610 - MPMX20_03617 0.85 -1.9
3,807,728 + +1.1
3,807,762 - -0.4
3,807,762 - -0.4
3,807,908 + MPMX20_03618 0.31 -0.3
3,807,932 - MPMX20_03618 0.41 -2.8
3,807,948 + MPMX20_03618 0.48 -0.7
3,808,002 - MPMX20_03618 0.71 -0.7
3,808,004 + MPMX20_03618 0.72 -0.1
3,808,004 + MPMX20_03618 0.72 -2.1
3,808,012 - MPMX20_03618 0.76 +1.6
3,808,012 - MPMX20_03618 0.76 -0.1
3,808,117 - +0.7
3,808,220 + -0.0
3,808,238 - +0.6
3,808,317 - +0.8
3,808,330 + -1.0
3,808,438 + MPMX20_03619 0.10 +1.0
3,808,482 + MPMX20_03619 0.12 +0.6
3,808,499 - MPMX20_03619 0.12 -0.5
3,808,516 - MPMX20_03619 0.13 -1.9
3,808,553 - MPMX20_03619 0.15 -0.6
3,808,574 - MPMX20_03619 0.15 -1.4
3,808,604 + MPMX20_03619 0.17 +0.8
3,808,612 - MPMX20_03619 0.17 +1.2
3,808,630 - MPMX20_03619 0.18 -0.9

Or see this region's nucleotide sequence