Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03616 and MPMX20_03617 are separated by 66 nucleotides MPMX20_03617 and MPMX20_03618 are separated by 174 nucleotides MPMX20_03618 and MPMX20_03619 are separated by 113 nucleotides
MPMX20_03616: MPMX20_03616 - Formate hydrogenlyase transcriptional activator, at 3,805,179 to 3,807,251
_03616
MPMX20_03617: MPMX20_03617 - hypothetical protein, at 3,807,318 to 3,807,662
_03617
MPMX20_03618: MPMX20_03618 - Endoribonuclease SymE, at 3,807,837 to 3,808,067
_03618
MPMX20_03619: MPMX20_03619 - DNA mismatch repair protein MutS, at 3,808,181 to 3,810,742
_03619
Position (kb)
3807
3808 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3806.337 kb on + strand, within MPMX20_03616 at 3806.337 kb on + strand, within MPMX20_03616 at 3806.337 kb on + strand, within MPMX20_03616 at 3806.345 kb on - strand, within MPMX20_03616 at 3806.345 kb on - strand, within MPMX20_03616 at 3806.345 kb on - strand, within MPMX20_03616 at 3806.368 kb on - strand, within MPMX20_03616 at 3806.368 kb on - strand, within MPMX20_03616 at 3806.391 kb on + strand, within MPMX20_03616 at 3806.391 kb on + strand, within MPMX20_03616 at 3806.394 kb on - strand, within MPMX20_03616 at 3806.399 kb on - strand, within MPMX20_03616 at 3806.467 kb on - strand, within MPMX20_03616 at 3806.499 kb on - strand, within MPMX20_03616 at 3806.513 kb on + strand, within MPMX20_03616 at 3806.571 kb on + strand, within MPMX20_03616 at 3806.579 kb on - strand, within MPMX20_03616 at 3806.579 kb on - strand, within MPMX20_03616 at 3806.635 kb on + strand, within MPMX20_03616 at 3806.648 kb on + strand, within MPMX20_03616 at 3806.841 kb on - strand, within MPMX20_03616 at 3806.855 kb on - strand, within MPMX20_03616 at 3806.953 kb on - strand, within MPMX20_03616 at 3807.076 kb on - strand at 3807.137 kb on + strand at 3807.145 kb on - strand at 3807.155 kb on - strand at 3807.239 kb on - strand at 3807.239 kb on - strand at 3807.249 kb on - strand at 3807.249 kb on - strand at 3807.251 kb on + strand at 3807.419 kb on + strand, within MPMX20_03617 at 3807.427 kb on - strand, within MPMX20_03617 at 3807.427 kb on - strand, within MPMX20_03617 at 3807.488 kb on + strand, within MPMX20_03617 at 3807.606 kb on - strand, within MPMX20_03617 at 3807.606 kb on - strand, within MPMX20_03617 at 3807.606 kb on - strand, within MPMX20_03617 at 3807.610 kb on - strand, within MPMX20_03617 at 3807.728 kb on + strand at 3807.762 kb on - strand at 3807.762 kb on - strand at 3807.908 kb on + strand, within MPMX20_03618 at 3807.932 kb on - strand, within MPMX20_03618 at 3807.948 kb on + strand, within MPMX20_03618 at 3808.002 kb on - strand, within MPMX20_03618 at 3808.004 kb on + strand, within MPMX20_03618 at 3808.004 kb on + strand, within MPMX20_03618 at 3808.012 kb on - strand, within MPMX20_03618 at 3808.012 kb on - strand, within MPMX20_03618 at 3808.117 kb on - strand at 3808.220 kb on + strand at 3808.238 kb on - strand at 3808.317 kb on - strand at 3808.330 kb on + strand at 3808.438 kb on + strand, within MPMX20_03619 at 3808.482 kb on + strand, within MPMX20_03619 at 3808.499 kb on - strand, within MPMX20_03619 at 3808.516 kb on - strand, within MPMX20_03619 at 3808.553 kb on - strand, within MPMX20_03619 at 3808.574 kb on - strand, within MPMX20_03619 at 3808.604 kb on + strand, within MPMX20_03619 at 3808.612 kb on - strand, within MPMX20_03619 at 3808.630 kb on - strand, within MPMX20_03619
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 3,806,337 + MPMX20_03616 0.56 -0.6 3,806,337 + MPMX20_03616 0.56 -0.1 3,806,337 + MPMX20_03616 0.56 +3.1 3,806,345 - MPMX20_03616 0.56 -0.7 3,806,345 - MPMX20_03616 0.56 +0.6 3,806,345 - MPMX20_03616 0.56 +2.4 3,806,368 - MPMX20_03616 0.57 -1.6 3,806,368 - MPMX20_03616 0.57 +0.3 3,806,391 + MPMX20_03616 0.58 +1.6 3,806,391 + MPMX20_03616 0.58 +0.6 3,806,394 - MPMX20_03616 0.59 -2.6 3,806,399 - MPMX20_03616 0.59 +0.3 3,806,467 - MPMX20_03616 0.62 -0.3 3,806,499 - MPMX20_03616 0.64 -0.2 3,806,513 + MPMX20_03616 0.64 -0.0 3,806,571 + MPMX20_03616 0.67 +0.6 3,806,579 - MPMX20_03616 0.68 -0.0 3,806,579 - MPMX20_03616 0.68 -1.4 3,806,635 + MPMX20_03616 0.70 -0.2 3,806,648 + MPMX20_03616 0.71 -0.5 3,806,841 - MPMX20_03616 0.80 -1.3 3,806,855 - MPMX20_03616 0.81 -1.4 3,806,953 - MPMX20_03616 0.86 +1.1 3,807,076 - +0.3 3,807,137 + -0.6 3,807,145 - -0.6 3,807,155 - +1.0 3,807,239 - +1.3 3,807,239 - +3.1 3,807,249 - -1.1 3,807,249 - -0.9 3,807,251 + -0.8 3,807,419 + MPMX20_03617 0.29 -2.9 3,807,427 - MPMX20_03617 0.32 -1.4 3,807,427 - MPMX20_03617 0.32 -1.1 3,807,488 + MPMX20_03617 0.49 +0.5 3,807,606 - MPMX20_03617 0.83 -0.8 3,807,606 - MPMX20_03617 0.83 +1.1 3,807,606 - MPMX20_03617 0.83 -0.7 3,807,610 - MPMX20_03617 0.85 -1.9 3,807,728 + +1.1 3,807,762 - -0.4 3,807,762 - -0.4 3,807,908 + MPMX20_03618 0.31 -0.3 3,807,932 - MPMX20_03618 0.41 -2.8 3,807,948 + MPMX20_03618 0.48 -0.7 3,808,002 - MPMX20_03618 0.71 -0.7 3,808,004 + MPMX20_03618 0.72 -0.1 3,808,004 + MPMX20_03618 0.72 -2.1 3,808,012 - MPMX20_03618 0.76 +1.6 3,808,012 - MPMX20_03618 0.76 -0.1 3,808,117 - +0.7 3,808,220 + -0.0 3,808,238 - +0.6 3,808,317 - +0.8 3,808,330 + -1.0 3,808,438 + MPMX20_03619 0.10 +1.0 3,808,482 + MPMX20_03619 0.12 +0.6 3,808,499 - MPMX20_03619 0.12 -0.5 3,808,516 - MPMX20_03619 0.13 -1.9 3,808,553 - MPMX20_03619 0.15 -0.6 3,808,574 - MPMX20_03619 0.15 -1.4 3,808,604 + MPMX20_03619 0.17 +0.8 3,808,612 - MPMX20_03619 0.17 +1.2 3,808,630 - MPMX20_03619 0.18 -0.9
Or see this region's nucleotide sequence